Cellulose affinity purification of fusion proteins tagged with fungal family 1 cellulose-binding domain

Protein Expression and Purification

Volumn 82, Issue 2, 2012, Pages 290-296

  Sugimoto, Naohisa ^a   Igarashi, Kiyohiko ^a   Samejima, Masahiro ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Carbohydrate binding modules; Cellulose affinity purification; Cellulose binding domain; Pichia pastoris; Red fluorescent protein

Indexed keywords

CELLULASE; CELLULOSE; FUNGAL PROTEIN; HYBRID PROTEIN; PHOTOPROTEIN; RED FLUORESCENT PROTEIN;

AFFINITY CHROMATOGRAPHY; AMINO ACID SEQUENCE; ARTICLE; BIOSYNTHESIS; CHEMISTRY; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; PICHIA; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE;

AMINO ACID SEQUENCE; CELLULASES; CELLULOSE; CHROMATOGRAPHY, AFFINITY; FUNGAL PROTEINS; LUMINESCENT PROTEINS; MOLECULAR SEQUENCE DATA; PICHIA; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT FUSION PROTEINS;

BOVINAE; HYPOCREA JECORINA; PICHIA PASTORIS;

EID: 84857132668     PISSN: 10465928     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pep.2012.01.007     Document Type: Article

References (38)

1. P. Tomme, H. Van Tilbeurgh, G. Pettersson, J. Van Damme, J. Vandekerckhove, J. Knowles, T. Teeri, and M. Claeyssens Studies of the cellulolytic system of Trichoderma reesei QM 9414. Analysis of domain function in two cellobiohydrolases by limited proteolysis Eur. J. Biochem. 170 1988 575 581
2. N.R. Gilkes, R.A. Warren, R.C. Miller, and D.G. Kilburn Precise excision of the cellulose binding domains from two Cellulomonas fimi cellulases by a homologous protease and the effect on catalysis J. Biol. Chem. 263 1988 10401 10407
3. P. Tomme, R.A.J. Warren, R.C. Miller, D.G. Kilburn, and N.R. Gilkes Cellulose-binding domains: classification and properties ACS Sym. Ser. 618 1995 142 163
4. A.B. Boraston, D.N. Bolam, H.J. Gilbert, and G.J. Davies Carbohydrate-binding modules: fine-tuning polysaccharide recognition Biochem. J. 382 2004 769 781
5. J. Lehtiö, J. Sugiyama, M. Gustavsson, L. Fransson, M. Linder, and T.T. Teeri The binding specificity and affinity determinants of family 1 and family 3 cellulose binding modules Proc. Natl. Acad. Sci. USA 100 2003 484 489
6. S. Ding, Q. Xu, M.K. Ali, J.O. Baker, E.A. Bayer, Y. Barak, R. Lamed, J. Sugiyama, G. Rumbles, and M.E. Himmel Versatile derivatives of carbohydrate-binding modules for imaging of complex carbohydrates approaching the molecular level of resolution Biotechniques 41 2006 435 436 438, 440 passim
7. D.J. Dagel, Y. Liu, L. Zhong, Y. Luo, M.E. Himmel, Q. Xu, Y. Zeng, S. Ding, and S. Smith In situ imaging of single carbohydrate-binding modules on cellulose microfibrils J. Phys. Chem. B 115 2011 635 641
8. D.B. Smith, and K.S. Johnson Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase Gene 67 1988 31 40
9. H. Bedouelle, and P. Duplay Production in Escherichia coli and one-step purification of bifunctional hybrid proteins which bind maltose. Export of the Klenow polymerase into the periplasmic space Eur. J. Biochem. 171 1988 541 549
10. J. Porath, J. Carlsson, I. Olsson, and G. Belfrage Metal chelate affinity chromatography, a new approach to protein fractionation Nature 258 1975 598 599
11. E. Ong, J.M. Greenwood, N.R. Gilkes, D.G. Kilburn, R.C. Miller, and R.A. Warren The cellulose-binding domains of cellulases: tools for biotechnology Trends Biotechnol. 7 1989 239 243
12. E. Ong, N.R. Gilkes, R.C. Miller, R.A.J. Warren, and D.G. Kilburn Enzyme immobilization using a cellulose-binding domain: properties of a beta-glucosidase fusion protein Enzyme Microb. Technol. 13 1991 59 65
13. I. Levy, and O. Shoseyov Cellulose-binding domains: biotechnological applications Biotechnol. Adv. 20 2002 191 213
14. M. Kavoosi, J. Meijer, E. Kwan, A.L. Creagh, D.G. Kilburn, and C.A. Haynes Inexpensive one-step purification of polypeptides expressed in Escherichia coli as fusions with the family 9 carbohydrate-binding module of xylanase 10A from T. maritima J. Chromatogr. B 807 2004 87 94
15. L. Hildén, and G. Johansson Recent developments on cellulases and carbohydrate-binding modules with cellulose affinity Biotechnol. Lett. 26 2004 1683 1693
16. J.B. Owolabi, P. Beguin, D.G. Kilburn, R.C. Miller, and R.A. Warren Expression in Escherichia coli of the Cellulomonas fimi structural gene for endoglucanase B Appl. Environ. Microbiol. 54 1988 518 523
17. A.B. Boraston, B.W. McLean, M.M. Guarna, E. Amandaron-Akow, and D.G. Kilburn A family 2a carbohydrate-binding module suitable as an affinity tag for proteins produced in Pichia pastoris Protein Expres. Purif. 21 2001 417 423
18. E.M. Kwan, A.B. Boraston, B.W. McLean, D.G. Kilburn, and R.A. Warren N-Glycosidase-carbohydrate-binding module fusion proteins as immobilized enzymes for protein deglycosylation Protein Eng. Des. Sel. 18 2005 497 501
19. B. Rodriguez, M. Kavoosi, J. Koska, A.L. Creagh, D.G. Kilburn, and C.A. Haynes Inexpensive and generic affinity purification of recombinant proteins using a family 2a CBM fusion tag Biotechnol. Prog. 20 2004 1479 1489
20. J. Hong, X. Ye, Y. Wang, and Y.P. Zhang Bioseparation of recombinant cellulose-binding module-proteins by affinity adsorption on an ultra-high-capacity cellulosic adsorbent Anal. Chim. Acta 621 2008 193 199
21. R. Ramos, L. Domingues, and M. Gama Escherichia coli expression and purification of LL37 fused to a family III carbohydrate-binding module from Clostridium thermocellum Protein Expres. Purif. 71 2010 1 7
22. D.E. Otter, P.A. Munro, G.K. Scott, and R. Geddes Desorption of Trichoderma reesei cellulase from cellulose by a range of desorbents Biotechnol. Bioeng. 34 1989 291 298
23. P. Tomme, D.P. Driver, E.A. Amandoron, R.C. Miller, R. Antony, J. Warren, and D.G. Kilburn Comparison of a fungal (family I) and bacterial (family II) cellulose-binding domain J. Bacteriol. 177 1995 4356 4363
24. J. Kraulis, G.M. Clore, M. Nilges, T.A. Jones, G. Pettersson, J. Knowles, and A.M. Gronenborn Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing Biochemistry 28 1989 7241 7257
25. M.L. Mattinen, M. Konttel, J. Kerovuo, M. Linder, A. Annila, G. Lindeberg, T. Reinikainen, and T. Drakenberg Three-dimensional structures of three engineered cellulose-binding domains of cellobiohydrolase I from Trichoderma reesei Protein Sci. 6 1997 294 303
26. E.S. Lymar, B. Li, and V. Renganathan Purification and characterization of a cellulose-binding beta-glucosidase from cellulose-degrading cultures of Phanerochaete chrysosporium Appl. Environ. Microbiol. 61 1995 2976 2980
27. M. Linder, and T.T. Teeri The cellulose-binding domain of the major cellobiohydrolase of Trichoderma reesei exhibits true reversibility and a high exchange rate on crystalline cellulose Proc. Natl. Acad. Sci. USA 93 1996 12251 12255
28. G. Carrard, and M. Linder Widely different off rates of two closely related cellulose-binding domains from Trichoderma reesei Eur. J. Biochem. 262 1999 637 643
29. K. Igarashi, M. Yoshida, H. Matsumura, N. Nakamura, H. Ohno, M. Samejima, and T. Nishino Electron transfer chain reaction of the extracellular flavocytochrome cellobiose dehydrogenase from the basidiomycete Phanerochaete chrysosporium FEBS J. 272 2005 2869 2877
30. R. Kawai, M. Yoshida, T. Tani, K. Igarashi, T. Ohira, H. Nagasawa, and M. Samejima Production and characterization of recombinant Phanerochaete chrysosporium beta-glucosidase in the methylotrophic yeast Pichia pastoris Biosci. Biotechnol. Biochem. 67 2003 1 7
31. K. De Schutter, Y.C. Lin, P. Tiels, A. Van Hecke, S. Glinka, J. Weber-Lehmann, P. Rouzé, Y. Van de Peer, and N. Callewaert Genome sequence of the recombinant protein production host Pichia pastoris Nat. Biotechnol. 27 2009 561 566
32. A.M. Hoffrén, T.T. Teeri, and O. Teleman Molecular dynamics simulation of fungal cellulose-binding domains: differences in molecular rigidity but a preserved cellulose binding surface Protein Eng. Des. Sel. 8 1995 443 450
33. G. Beldman, A.G. Voragen, F.M. Rombouts, M.F. Searle-van Leeuwen, and W. Pilnik Adsorption and kinetic behavior of purified endoglucanases and exoglucanases from Trichoderma viride Biotechnol. Bioeng. 30 1987 251 257
34. T. Reinikainen, K. Takkinen, and T.T. Teeri Comparison of the adsorption properties of a single-chain antibody fragment fused to a fungal or bacterial cellulose-binding domain Enzyme Microb. Technol. 20 1997 143 149
35. M. Linder, T. Nevanen, L. Soderholm, O. Bengs, and T.T. Teeri Improved immobilization of fusion proteins via cellulose-binding domains Biotechnol. Bioeng. 60 1998 642 647
36. J. Lehtiö, H. Wernerus, P. Samuelson, T.T. Teeri, and S. Stahl Directed immobilization of recombinant staphylococci on cotton fibers by functional display of a fungal cellulose-binding domain FEMS Microbiol. Lett. 195 2001 197 204
37. M. Linder, G. Lindeberg, T. Reinikainen, T.T. Teeri, and G. Pettersson The difference in affinity between two fungal cellulose-binding domains is dominated by a single amino acid substitution FEBS Lett. 372 1995 96 98
38. M. Linder, M.L. Mattinen, M. Kontteli, G. Lindeberg, J. Sthlberg, T. Drakenberg, T. Reinikainen, G. Pettersson, and A. Annila Identification of functionally important amino acids in the cellulose-binding domain of Trichoderma reesei cellobiohydrolase I Protein Sci. 4 1995 1056 1064