Microsatellites reveal a strong subdivision of genetic structure in Chinese populations of the mite Tetranychus urticae Koch (Acari: Tetranychidae)

BMC Genetics

Volumn 13, Issue , 2012, Pages

  Sun, Jing Tao ^a   Lian, Chunlan ^b   Navajas, Maria ^c   Hong, Xiao Yue ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b UNIVERSITY OF TOKYO   (Japan)

^c CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

Author keywords

Genetic diversity; Green form; Null alleles; Red form; Two spotted spider mite

Indexed keywords

ARTICLE; CHINESE; EPIGENETICS; FEMALE; GENE FLOW; GENE FREQUENCY; GENE IDENTIFICATION; GENE LINKAGE DISEQUILIBRIUM; GENE LOCATION; GENE LOCUS; GENETIC DISTANCE; GENETIC VARIABILITY; GENOTYPE; HETEROZYGOSITY; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; TETRANYCHIDAE; TETRANYCHUS URTICAE KOCH; ANIMAL; CHINA; GENETICS; HUMAN; PHYLOGEOGRAPHY; POPULATION GENETICS;

ACARI; TETRANYCHIDAE; TETRANYCHUS URTICAE;

MICROSATELLITE DNA;

ANIMALS; CHINA; GENETIC VARIATION; GENETICS, POPULATION; HUMANS; MICROSATELLITE REPEATS; PHYLOGEOGRAPHY; TETRANYCHIDAE;

EID: 84857124757     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-13-8     Document Type: Article

References (50)

1. Bolland HR, Gutierrez J, Flechtmann CHW. World catalogue of the spider mite family (Acari: Tetranychidae), with references to taxonomy, synonymy, host plants and distribution 1998, Leiden: Brill Academic press.
2. Mitchell R. Growth and population dynamics of a spider mite (Tetranychus urticae K., Acarina: Tetranychidae). Ecology 1973, 54:1349-1355.
3. Smitley DR, Kennedy GG. Aerial dispersal of the tow-spotted spider mite (Tetranychus urticae) from field corn. Exp Appl Acarol 1988, 5:33-46.
4. Grafton-Cardwell EEJ, Granett J, Normington SM. Influence of dispersal from almonds on the population-dynamics and acaricide resistance frequencies of spider mites infesting neighboring cotton. Exp Appl Acarol 1991, 10:187-212.
5. Xie L, Hong XY, Xue XF. Population genetic structure of the two spotted spider mite (Acari: Tetranychidae) from China. Ann Entomol Soc Am 2006, 99:959-965.
6. Li T, Chen XL, Hong XY. Population genetic structure of Tetranychus urticae and its sibling species Tetranychus cinnabarinus (Acari: Tetranychidae) in China as inferred from microsatellite data. Ann Entomol Soc Am 2009, 102:674-683.
7. Takafuji A, So PM, Tsuno N. Inter- and intra-population variation in diapause attribute of the two-spotted spider mite, Tetranychus urticae Koch, in Japan. Res Pop Ecol 1991, 33:331-344.
8. Gotoh T, Tokioka T. Genetic compatability among diapausing red, non-diapausing red and diapausing green forms of the two-spotted spider mite, Tetranychus urticae Koch (Acari: Tetranychidae). Jpn J Entomol 1996, 64:215-225.
9. Kuang HY, Cheng LS. Studies on differentiation between two sibling species Tetranychus cinnabarinus and T. urticae. Acta Entomol Sin 1990, 33:109-115. in Chinese with English abstract.
10. Dong HF, Guo YJ, Niu LP. Species identification of three common spider mites through cross breeding in China. Acta Phytophy Sin 1987, 14:157-161. in Chinese with English abstract.
11. Meng HS, Wang KY, Jiang XY, Yi MQ. Occurrence characteristics of Tetranychus urticae and its control methods. Entomol Knowl 2001, 38:52-54. in Chinese with English abstract.
12. Navajas M, Perrot-Minnot J, Lagnel J, Migeon A, Bourse T, et al. Genetic structure of a greenhouse population of the spider mite Tetranychus urticae: spatio-temporal analysis with microsatellite markers. Insect Mol Biol 2002, 11:157-165. 10.1046/j.1365-2583.2002.00320.x, 11966881.
13. Uesugi R, Osakabe MH. Isolation and characterization of microsatellite loci in the two-spotted spider mite, Tetranychus urticae (Acari: Tetranychidae). Mol Ecol Notes 2007, 7:290-292.
14. Bailly X, Migeon A, Navajas M. Analysis of microsatellite variation in the spider mite pest Tetranychus turkestani (Acari: Tetranychidae) reveals population genetic structure and raise questions about related ecological factors. Biol J Linn Soc 2004, 82:69-78.
15. Carbonnelle S, Hance T, Migeon A, Baret P, Cros-Arteil S, et al. Microsatellite markers reveal spatial genetic structure of Tetranychus urticae (Acari: Tetranychidae) population along a latitudinal gradient in Europe. Exp Appl Acarol 2007, 41:225-241. 10.1007/s10493-007-9068-z, 17457678.
16. Zhang DX, Yan LN, Ji YJ, Hewitt GM, Huang ZS. Unexpected relationships of substructured populations in Chinese Locusta migratoria. BMC Evol Biol 2009, 9:144.
17. Keyghobadi N, Roland J, Strobeck C. Influence of landscape on the population genetic structure of the alpine butterfly Parnassius smintheu (Papilionidae). Mol Ecol 1999, 8:1481-1495. 10.1046/j.1365-294x.1999.00726.x, 10564454.
18. Uesugi R, Kunimoto Y, Osakabe MH. The fine-scale genetic structure of the two-spotted spider mite in a commercial greenhouse. Exp Appl Acarol 2009, 47:99-109. 10.1007/s10493-008-9201-7, 18946715.
19. Uesugi R, Sasawaki T, Osakabe M. Evidence of a high level of gene flow among apple trees in Tetranychus urticae. Exp Appl Acarol 2009, 49:281-290. 10.1007/s10493-009-9267-x, 19421878.
20. Hinomoto N, Takafuji A. Genetic changes in the population structure of the two-spotted mite Tetranychus urticae Koch (Acari: Tetranychidae), on vinyl-house strawberries. Appl Entomol Zool 1995, 30:521-528.
21. Meng XF, Shi M, Chen XX. Population genetic structure of Chilo suppressali (Walker) (Lepidoptera: Crambidae): strong subdivision in China inferred from microsatellite markers and mtDNA gene sequences. Mol Ecol 2008, 17:2880-2897. 10.1111/j.1365-294X.2008.03792.x, 18482260.
22. Li CQ, Chang Q, Chen JQ, Zhang BW, Zhu LF, et al. Population structure and phylogeography of the wild boar Sus scrofa in Northeast Asia based on mitochondrial DNA control region variation analysis. Acta Zool Sin 2005, 51:640-649. in Chinese with English abstract.
23. Niu CW, Zhang QW, Ye ZH, Luo LZ. Analysis of genetic diversity in different geographic populations of the beet armyworm Spodoptera exigua (Lepidoptera: Noctuidae) with AFLP technique. Acta Entomol Sin 2006, 49:867-873.
24. Tsagkarakou A, Navajas M, Lagnel J, Pasteur N. Population structure in the spider mite Tetranychus urticae (Acari: Tetranychidae) from Crete based on multiple allozymes. Heredity 1997, 78:84-92. 10.1038/hdy.1997.10, 16397641.
25. Tsagkarakou A, Navajas M, Papaioannou-Souliotis P, Pasteur N. Gene flow among Tetranychus urticae (Acari: Tetranychidae) population in Greece. Mol Ecol 1998, 7:71-79.
26. Xie L, Miao H, Hong XY. The two-spotted spider mite Tetranychus urticae Koch and the carmine spider mite Tetranychus cinnabarinus (Boisduval) in China mixed in their Wolbachia phylogenetic tree. Zootaxa 2006, 1165:33-46.
27. Li GQ, Xue XF, Zhang KJ, Hong XY. Identification and molecular phylogeny of agriculturally important spider mites (Acari: Tetranychidae) based on mitochondrial and nuclear ribosomal DNA sequences, with an emphasis on Tetranychus. ZOOTAXA 2010, 2647:1-15.
28. Gomi K, Gotoh T, Noda H. Wolbachia having no effect on reproductive incompatibility in Tetranychus kanzawai Kishida (Acari: Tetranychidae). Appl Entomol Zool 1997, 32:485-490.
29. Lian C, Wadud MA, Geng Q, Shimatani K, Hogetsu T. An improved technique for isolating codominant compound microsatellite markers. J Plant Res 2006, 119:415-417.
30. Van-Oosterhout C, Hutchinson WF, Wills DPM, Shipley P. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 2004, 4:535-538.
31. Goudet J. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). 2001, University of Lausanne, Lausanne, Switzerland., http://www.unil.ch/izea/softwares/fstat.html
32. Mousadik AE, Peit RL. High level of genetics differentiation for allelic richness among populations of argan tree [Argania spinos (L.) Skeels] endemic to Morocco. Theor Appl Genet 1996, 92:832-839.
33. Peakall R, Souse PE. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 2006, 6:288-295.
34. Guo SW, Thompson EA. Performing the exact test of Hardy-Weinberg proposition for multiple alleles. Biometrics 1992, 48:361-372. 10.2307/2532296, 1637966.
35. Raymond M, Rousset F. GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism. J Hered 1995, 86:248-249.
36. Rice WR. Analyzing table of statistical tests. Evolution 1989, 43:223-225.
37. Dempster AP, Laird NM, Rubin DB. Maximum likelihood from incomplete data via the EM algorithm. J R STAT SOC B 1977, 39:1-38.
38. Chapuis MP, Estoup A. Microsatellite null alleles and estimation of population differentiation. Mol Biol Evol 2007, 24:621-631.
39. Chapuis MP, Lecoq M, Michalakis Y, Loiseau A, Sword GA, Piry S, et al. Do outbreaks affect genetic population structure? A worldwide survey in Locusta migratori, a pest plagued by microsatellite null alleles. Mol Ecol 2008, 17:3640-3653. 10.1111/j.1365-294X.2008.03869.x, 18643881.
40. Oddou-Muratorio S, Vendramin GG, Buiteveld J, Fady B. Population estimators or progeny tests: what is the best method to assess null allele frequencies at SSR loci?. Conserv Gene 2009, 10:1343-1347.
41. SPSS Inc SPSS for windows, release 13.0, September 1, 2004. 2004, Chicago, IL, SPSS Inc, .
42. Mantel N. The detection of disease clustering as a generalised regression approach. Cancer Res 1967, 27:209-220.
43. Saitou N, Nei M. The neighbor-joining method: a new method for reconstruction phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
44. Cavalli-Sforza LL, Edwards AWF. Phylogenetic analysis: models and estimation procedures. Am J Hum Genet 1967, 19:233-257. 1706274, 6026583.
45. Felsenstein J. PHYLIP: phylogeny inference package, version 3.6. 2001, Department of Genetics, University of Washington, Seattle. WA.
46. Page RDM. TreeView: An application to display phylogenetic trees on personal computers. Bioinformatics 1996, 12:357-358.
47. Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
48. Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 2005, 14:2611-2620. 10.1111/j.1365-294X.2005.02553.x, 15969739.
49. Excoffier L, Smouse PE. Quattro JM, Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491. 1205020, 1644282.
50. Excoffier L, Laval G, Schneider S. Arlequin version 3.0: An integrated software package for population genetics data analysis. Evol Bioinfo Online 2005, 1:47-50.