Effect of CpG island methylation on MicroRNA expression in the k-562 cell line

Biochemical Genetics

Volumn 50, Issue 1-2, 2012, Pages 122-134

  Yang, Yang ^a   Wang, Li Li ^a   Li, Yong Hui ^a   Gao, Xiao Ning ^a   Liu, Yang ^a   Yu, Li ^a  

^a CHINESE PLA GENERAL HOSPITAL   (China)

Author keywords

CpG island; Expression; MicroRNA; Regulation

Indexed keywords

MICRORNA; MICRORNA 369; MICRORNA 410; MICRORNA 615; MICRORNA 663; RNA; RNA PRECURSOR; UNCLASSIFIED DRUG;

ARTICLE; CELL STRAIN K 562; CONTROLLED STUDY; CPG ISLAND; DEMETHYLATION; DNA METHYLATION; GENE EXPRESSION REGULATION; IN VITRO STUDY; MICROARRAY ANALYSIS; PROMOTER REGION; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; TRANSCRIPTION REGULATION;

AZACITIDINE; CPG ISLANDS; DNA METHYLATION; GENE EXPRESSION REGULATION; HUMANS; K562 CELLS; MICRORNAS; NEOPLASM PROTEINS; PROMOTER REGIONS, GENETIC; REAL-TIME POLYMERASE CHAIN REACTION; RNA PRECURSORS;

EID: 84857049970     PISSN: 00062928     EISSN: 15734927     Source Type: Journal    
DOI: 10.1007/s10528-011-9478-9     Document Type: Article

References (18)

1. I Alvarez-Garcia EA Miska 2005 MicroRNA functions in animal development and human disease Development 132 4653 4662 16224045 1:CAS:528: DC%2BD2MXht12gsbjI 10.1242/dev.02073 (Pubitemid 41685276)
2. V Ambros 2004 The functions of animal microRNAs Nature 431 350 355 15372042 1:CAS:528:DC%2BD2cXnsFaiu7g%3D 10.1038/nature02871 (Pubitemid 39265675)
3. MJ Bueno I Pérez de Castro M Gómez de Cedrón J Santos GA Calin JC Cigudosa CM Croce J Fernández-Piqueras M Malumbres 2008 Genetic and epigenetic silencing of microRNA-203 enhances ABL1 and BCR-ABL1 oncogene expression Cancer Cell 13 496 506 18538733 1:CAS:528: DC%2BD1cXns1yhtbs%3D 10.1016/j.ccr.2008.04.018 (Pubitemid 351763902)
4. DL Corcoran KV Pandit B Gordon A Bhattacharjee N Kaminski PV Benos 2009 Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data PLoS One 4 e5279 19390574 10.1371/journal.pone.0005279
5. F Fazi S Racanicchi G Zardo LM Starnes M Mancini L Travaglini D Diverio E Ammatuna G Cimino F Lo-Coco F Grignani C Nervi 2007 Epigenetic silencing of the myelopoiesis regulator microRNA-223 by the AML1/ETO oncoprotein Cancer Cell 12 457 466 17996649 1:CAS:528:DC%2BD2sXhtl2nurrO 10.1016/j.ccr.2007.09.020 (Pubitemid 350046404)
6. HJ Fu J Zhu M Yang ZY Zhang Y Tie XF Zheng 2006 A novel method to monitor the expression of microRNAs Mol Biotechnol 32 197 204 16632886 1:CAS:528:DC%2BD28Xjs1Sksrc%3D 10.1385/MB:32:3:197
7. J Godlewski MO Nowicki A Bronisz S Williams A Otsuki G Nuovo A Raychaudhury HB Newton EA Chiocca S Lawler 2008 Targeting of the Bmi-1 oncogene/stem cell renewal factor by microRNA-128 inhibits glioma proliferation and self-renewal Cancer Res 68 9125 9130 19010882 1:CAS:528:DC%2BD1cXhtlOmt7zL 10.1158/0008-5472.CAN-08-2629
8. L Han PD Witmer E Casey D Valle S Sukumar 2007 DNA Methylation regulates microRNA expression Cancer Biol Ther 6 8 1284 1288 17660710 1:CAS:528: DC%2BD1cXkvVahtw%3D%3D (Pubitemid 351590384)
9. JB Johnnidis MH Harris RT Wheeler S Stehling-Sun MH Lam O Kirak TR Brummelkamp MD Fleming FD Camargo 2008 Regulation of progenitor cell proliferation and granulocyte function by microRNA-223 Nature 451 1125 1129 18278031 1:CAS:528:DC%2BD1cXisFWjtrY%3D 10.1038/nature06607 (Pubitemid 351317447)
10. Z Li J Lu M Sun S Mi H Zhang RT Luo P Chen Y Wang M Yan Z Qian MB Neilly J Jin Y Zhang SK Bohlander DE Zhang RA Larson MM Le Beau MJ Thirman TR Golub JD Rowley J Chen 2008 Distinct microRNA expression profiles in acute myeloid leukemia with common translocations Proc Natl Acad Sci 105 15535 15540 18832181 1:CAS:528:DC%2BD1cXht1Gnt73E 10.1073/pnas.0808266105
11. F Ozsolak LL Poling Z Wang H Liu XS Liu RG Roeder X Zhang JS Song DE Fisher 2008 Chromatin structure analyses identify miRNA promoters Genes Dev 22 3172 3183 19056895 1:CAS:528:DC%2BD1cXhsVKhs7%2FL 10.1101/gad.1706508
12. M Pigazzi E Manara E Baron G Basso 2009 miR-34b targets cyclic AMP-responsive element binding protein in acute myeloid leukemia Cancer Res 69 6 2471 2478 19258499 1:CAS:528:DC%2BD1MXjtFyqur0%3D 10.1158/0008-5472.CAN-08-3404
13. A Rodriguez S Griffiths-Jones JL Ashurst A Bradley 2004 Identification of mammalian microRNA host genes and transcription units Genome Res 14 1902 1910 15364901 1:CAS:528:DC%2BD2cXotl2hu7w%3D 10.1101/gr.2722704 (Pubitemid 39386503)
14. Y Shi Y Jin 2009 MicroRNA in cell differentiation and development Sci China C Life Sci 52 205 211 19294345 1:CAS:528:DC%2BD1MXjt1Cnu70%3D 10.1007/s11427-009-0040-5
15. G Stefani FJ Slack 2008 Small non-coding RNAs in animal development Nat Rev Mol Cell Biol 9 219 230 18270516 1:CAS:528:DC%2BD1cXitlGnurY%3D 10.1038/nrm2347 (Pubitemid 351301826)
16. M Toyota H Suzuki Y Sasaki R Maruyama K Imai Y Shinomura T Tokino 2008 Epigenetic silencing of microRNA-34b/c and B-cell translocation gene 4 is associated with CpG island methylation in colorectal cancer Cancer Res 68 4123 4132 18519671 1:CAS:528:DC%2BD1cXmsFKmtLo%3D 10.1158/0008-5472.CAN-08-0325
17. W Wu M Sun GM Zou J Chen 2007 MicroRNA and cancer: current status and prospective Int J Cancer 120 953 960 17163415 1:CAS:528:DC%2BD2sXhsVWiu7Y%3D 10.1002/ijc.22454 (Pubitemid 46214293)
18. L Yu C Liu J Vandeusen B Becknell Z Dai YZ Wu A Raval TH Liu W Ding C Mao S Liu LT Smith S Lee L Rassenti G Marcucci J Byrd MA Caligiuri C Plass 2005 Global assessment of promoter methylation in a mouse model of cancer identifies ID4 as a putative tumor-suppressor gene in human leukemia Nat Genet 37 265 274 15723065 1:CAS:528:DC%2BD2MXhsFOqu7Y%3D 10.1038/ng1521 (Pubitemid 41716253)