-
1
-
-
19744373332
-
Reconstruction and exploration of three-dimensional confocal microscopy data in an immersive virtual environment
-
Ai, Z., Chen, X., Rasmussen, M., and Folberg, R. (2005). Reconstruction and exploration of three-dimensional confocal microscopy data in an immersive virtual environment. Comput. Med. Imaging Graph. 29, 313-318.
-
(2005)
Comput. Med. Imaging Graph
, vol.29
, pp. 313-318
-
-
Ai, Z.1
Chen, X.2
Rasmussen, M.3
Folberg, R.4
-
2
-
-
65949084476
-
A computational framework for ultrastructural mapping of neural circuitry
-
doi: 10.1371/journal.pbio.1000074
-
Anderson, J. R., Jones, B. W., Yang, J. H., Shaw, M. V., Watt, C. B., Koshevoy, P., Spaltenstein, J., Jurrus, E., Kannan, U. V., Whitaker, R. T., Mastronarde, D., Tasdizen, T., and Marc, R. E. (2009). A computational framework for ultrastructural mapping of neural circuitry. PLoS Biol. 7, e1000074.
-
(2009)
PLoS Biol
, vol.7
, pp. 1000074
-
-
Anderson, J.R.1
Jones, B.W.2
Yang, J.H.3
Shaw, M.V.4
Watt, C.B.5
Koshevoy, P.6
Spaltenstein, J.7
Jurrus, E.8
Kannan, U.V.9
Whitaker, R.T.10
Mastronarde, D.11
Tasdizen, T.12
Marc, R.E.13
-
3
-
-
84863009011
-
Thin plate spline
-
in From, E. W. Weisstein. Available at
-
Belongie, S. (2010). "Thin plate spline," in From MathWorld - A Wolfram Web Resource, ed. E. W. Weisstein. Available at: http://mathworld.wolfram.com/ ThinPlateSpline.html
-
(2010)
MathWorld - a Wolfram Web Resource
-
-
Belongie, S.1
-
4
-
-
35349009149
-
Large histological serial sections for computational tissue volume reconstruction
-
Braumann, U. D., Scherf, N., Einenkel, J., Horn, L. C., Wentzensen, N., Loeffler, M., and Kuska, J. P. (2007). Large histological serial sections for computational tissue volume reconstruction. Methods Inf. Med. 46, 614-622.
-
(2007)
Methods Inf. Med
, vol.46
, pp. 614-622
-
-
Braumann, U.D.1
Scherf, N.2
Einenkel, J.3
Horn, L.C.4
Wentzensen, N.5
Loeffler, M.6
Kuska, J.P.7
-
5
-
-
59949087998
-
Volume reconstruction of large tissue specimens from serial physical sections using confocal microscopy and correction of cutting deformations by elastic registration
-
Capek, M., Bruza, P., Janacek, J., Karen, P., Kubinova, L., and Vagnerova, R. (2009). Volume reconstruction of large tissue specimens from serial physical sections using confocal microscopy and correction of cutting deformations by elastic registration. Microsc. Res. Tech. 72, 110-119.
-
(2009)
Microsc. Res. Tech
, vol.72
, pp. 110-119
-
-
Capek, M.1
Bruza, P.2
Janacek, J.3
Karen, P.4
Kubinova, L.5
Vagnerova, R.6
-
6
-
-
33745076466
-
Automated microscopy system for mosaic acquisition and processing
-
Chow, S. K., Hakozaki, H., Price, D. L., MacLean, N. A., Deerinck, T. J., Bouwer, J. C., Martone, M. E., Peltier, S. T., and Ellisman, M. H. (2006). Automated microscopy system for mosaic acquisition and processing. J. Microsc. 222, 76-84.
-
(2006)
J. Microsc
, vol.222
, pp. 76-84
-
-
Chow, S.K.1
Hakozaki, H.2
Price, D.L.3
Maclean, N.A.4
Deerinck, T.J.5
Bouwer, J.C.6
Martone, M.E.7
Peltier, S.T.8
Ellisman, M.H.9
-
7
-
-
58549092240
-
The neuroscience information framework: A data and knowledge environment for neuroscience
-
Gardner, D., Akil, H., Ascoli, G. A., Bowden, D. M., Bug, W., Donohue, D. E., Goldberg, D. H., Grafstein, B., Grethe, J. S., Gupta, A., Halavi, M., Kennedy, D. N., Marenco, L., Martone, M. E., Miller, P. L., Muller, H. M., Robert, A., Shepherd, G. M., Sternberg, P. W., Van Essen, D. C., and Williams, R. W. (2008). The neuroscience information framework: a data and knowledge environment for neuroscience. Neuroinformatics 6, 149-160.
-
(2008)
Neuroinformatics
, vol.6
, pp. 149-160
-
-
Gardner, D.1
Akil, H.2
Ascoli, G.A.3
Bowden, D.M.4
Bug, W.5
Donohue, D.E.6
Goldberg, D.H.7
Grafstein, B.8
Grethe, J.S.9
Gupta, A.10
Halavi, M.11
Kennedy, D.N.12
Marenco, L.13
Martone, M.E.14
Miller, P.L.15
Muller, H.M.16
Robert, A.17
Shepherd, G.M.18
Sternberg, P.W.19
van Essen, D.C.20
Williams, R.W.21
more..
-
8
-
-
0003448569
-
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Harlow, E., and Lane, D. (1988). Antibodies: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
-
(1988)
Antibodies: A Laboratory Manual
-
-
Harlow, E.1
Lane, D.2
-
9
-
-
33747181686
-
3D volume reconstruction of a mouse brain from histological sections using warp filtering
-
Ju, T., Warren, J., Carson, J., Bello, M., Kakadiaris, I., Chiu, W., Thaller, C., and Eichele, G. (2006). 3D volume reconstruction of a mouse brain from histological sections using warp filtering. J. Neurosci Methods 156, 84-100.
-
(2006)
J. Neurosci Methods
, vol.156
, pp. 84-100
-
-
Ju, T.1
Warren, J.2
Carson, J.3
Bello, M.4
Kakadiaris, I.5
Chiu, W.6
Thaller, C.7
Eichele, G.8
-
10
-
-
0029879295
-
Computer visualization of three-dimensional image data using IMOD
-
Kremer, J. R., Mastronarde, D. N., and McIntosh, J. R. (1996). Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 116, 71-76.
-
(1996)
J. Struct. Biol
, vol.116
, pp. 71-76
-
-
Kremer, J.R.1
Mastronarde, D.N.2
McIntosh, J.R.3
-
11
-
-
40649103642
-
Trajectory fusion for three-dimensional volume reconstruction
-
Lee, S. C., and Bajcsy, P. (2008). Trajectory fusion for three-dimensional volume reconstruction. Comput. Vis. Image Underst. 110, 19-31.
-
(2008)
Comput. Vis. Image Underst
, vol.110
, pp. 19-31
-
-
Lee, S.C.1
Bajcsy, P.2
-
12
-
-
33846252240
-
Genome-wide atlas of gene expression in the adult mouse brain
-
Lein, E. S., Hawrylycz, M. J., Ao, N., Ayres, M., Bensinger, A., Bernard, A., Boe, A. F., Boguski, M. S., Brockway, K. S., Byrnes, E. J., Chen, L., Chen, T. M., Chin, M. C., Chong, J., Crook, B. E., Czaplinska, A., Dang, C. N., Datta, S., Dee, N. R., Desaki, A. L., Desta, T., Diep, E., Dolbeare, T. A., Donelan, M. J., Dong, H. W., Dougherty, J. G., Duncan, B. J., Ebbert, A. J., Eichele, G., Estin, L. K., Faber, C., Facer, B. A., Fields, R., Fischer, S. R., Fliss, T. P., Frensley, C., Gates, S. N., Glattfelder, K. J., Halverson, K. R., Hart, M. R., Hohmann, J. G., Howell, M. P., Jeung, D. P., Johnson, R. A., Karr, P. T., Kawal, R., Kidney, J. M., Knapik, R. H., Kuan, C. L., Lake, J. H., Laramee, A. R., Larsen, K. D., Lau, C., Lemon, T. A., Liang, A. J., Liu, Y., Luong, L. T., Michaels, J., Morgan, J. J., Morgan, R. J., Mortrud, M. T., Mosqueda, N. F., Ng, L. L., Ng, R., Orta, G. J., Overly, C. C., Pak, T. H., Parry, S. E., Pathak, S. D., Pearson, O. C., Puchalski, R. B., Riley, Z. L., Rockett, H. R., Rowland, S. A., Royall, J. J., Ruiz, M. J., Sarno, N. R., Schaffnit, K., Shapovalova, N. V., Sivisay, T., Slaughterbeck, C. R., Smith, S. C., Smith, K. A., Smith, B. I., Sodt, A. J., Stewart, N. N., Stumpf, K. R., Sunkin, S. M., Sutram, M., Tam, A., Teemer, C. D., Thaller, C., Thompson, C. L., Varnam, L. R., Visel, A., Whitlock, R. M., Wohnoutka, P. E., Wolkey, C. K., Wong, V. Y., Wood, M., Yaylaoglu, M. B., Young, R. C., Youngstrom, B. L., Yuan, X. F., Zhang, B., Zwingman, T. A., and Jones, A. R. (2007). Genome-wide atlas of gene expression in the adult mouse brain. Nature 445, 168-176.
-
(2007)
Nature
, vol.445
, pp. 168-176
-
-
Lein, E.S.1
Hawrylycz, M.J.2
Ao, N.3
Ayres, M.4
Bensinger, A.5
Bernard, A.6
Boe, A.F.7
Boguski, M.S.8
Brockway, K.S.9
Byrnes, E.J.10
Chen, L.11
Chen, T.M.12
Chin, M.C.13
Chong, J.14
Crook, B.E.15
Czaplinska, A.16
Dang, C.N.17
Datta, S.18
Dee, N.R.19
Desaki, A.L.20
Desta, T.21
Diep, E.22
Dolbeare, T.A.23
Donelan, M.J.24
Dong, H.W.25
Dougherty, J.G.26
Duncan, B.J.27
Ebbert, A.J.28
Eichele, G.29
Estin, L.K.30
Faber, C.31
Facer, B.A.32
Fields, R.33
Fischer, S.R.34
Fliss, T.P.35
Frensley, C.36
Gates, S.N.37
Glattfelder, K.J.38
Halverson, K.R.39
Hart, M.R.40
Hohmann, J.G.41
Howell, M.P.42
Jeung, D.P.43
Johnson, R.A.44
Karr, P.T.45
Kawal, R.46
Kidney, J.M.47
Knapik, R.H.48
Kuan, C.L.49
Lake, J.H.50
Laramee, A.R.51
Larsen, K.D.52
Lau, C.53
Lemon, T.A.54
Liang, A.J.55
Liu, Y.56
Luong, L.T.57
Michaels, J.58
Morgan, J.J.59
Morgan, R.J.60
Mortrud, M.T.61
Mosqueda, N.F.62
Ng, L.L.63
Ng, R.64
Orta, G.J.65
Overly, C.C.66
Pak, T.H.67
Parry, S.E.68
Pathak, S.D.69
Pearson, O.C.70
Puchalski, R.B.71
Riley, Z.L.72
Rockett, H.R.73
Rowland, S.A.74
Royall, J.J.75
Ruiz, M.J.76
Sarno, N.R.77
Schaffnit, K.78
Shapovalova, N.V.79
Sivisay, T.80
Slaughterbeck, C.R.81
Smith, S.C.82
Smith, K.A.83
Smith, B.I.84
Sodt, A.J.85
Stewart, N.N.86
Stumpf, K.R.87
Sunkin, S.M.88
Sutram, M.89
Tam, A.90
Teemer, C.D.91
Thaller, C.92
Thompson, C.L.93
Varnam, L.R.94
Visel, A.95
Whitlock, R.M.96
Wohnoutka, P.E.97
Wolkey, C.K.98
more..
-
13
-
-
54049101650
-
Direct labeling and visualization of blood vessels with lipophilic carbocyanine dye DiI
-
Li, Y., Song, Y., Zhao, L., Gaidosh, G., Laties, A. M., and Wen, R. (2008). Direct labeling and visualization of blood vessels with lipophilic carbocyanine dye DiI. Nat. Protoc. 3, 1703-1708.
-
(2008)
Nat. Protoc
, vol.3
, pp. 1703-1708
-
-
Li, Y.1
Song, Y.2
Zhao, L.3
Gaidosh, G.4
Laties, A.M.5
Wen, R.6
-
14
-
-
0242321783
-
The cell-centered database: A database for multiscale structural and protein localization data from light and electron microscopy
-
Martone, M. E., Zhang, S., Gupta, A., Qian, X., He, H., Price, D. L., Wong, M., Santini, S., and Ellisman, M. H. (2003). The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics 1, 379-395.
-
(2003)
Neuroinformatics
, vol.1
, pp. 379-395
-
-
Martone, M.E.1
Zhang, S.2
Gupta, A.3
Qian, X.4
He, H.5
Price, D.L.6
Wong, M.7
Santini, S.8
Ellisman, M.H.9
-
15
-
-
33646713907
-
High- resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders
-
Price, D. L., Chow, S. K., Maclean, N. A., Hakozaki, H., Peltier, S., Martone, M. E., and Ellisman, M. H. (2006). High- resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders. Neuroinformatics 4, 65-80.
-
(2006)
Neuroinformatics
, vol.4
, pp. 65-80
-
-
Price, D.L.1
Chow, S.K.2
Maclean, N.A.3
Hakozaki, H.4
Peltier, S.5
Martone, M.E.6
Ellisman, M.H.7
-
16
-
-
77957666947
-
Automatic mosaicking and volume assembly for high-throughput serial- section transmission electron microscopy
-
Tasdizen, T., Koshevoy, P., Grimm, B. C., Anderson, J. R., Jones, B. W., Watt, C. B., Whitaker, R. T., and Marc, R. E. (2010). Automatic mosaicking and volume assembly for high-throughput serial- section transmission electron microscopy. J. Neurosci. Methods 193, 132-144.
-
(2010)
J. Neurosci. Methods
, vol.193
, pp. 132-144
-
-
Tasdizen, T.1
Koshevoy, P.2
Grimm, B.C.3
Anderson, J.R.4
Jones, B.W.5
Watt, C.B.6
Whitaker, R.T.7
Marc, R.E.8
|