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Volumn 193, Issue 1, 2010, Pages 132-144

Automatic mosaicking and volume assembly for high-throughput serial-section transmission electron microscopy

Author keywords

Connectome; Electron microscopy; Image registration; Serial section

Indexed keywords

ALGORITHM; ANALYTIC METHOD; ARTICLE; AUTOMATION; IMAGE ANALYSIS; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; TRANSMISSION ELECTRON MICROSCOPY;

EID: 77957666947     PISSN: 01650270     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2010.08.001     Document Type: Article
Times cited : (36)

References (48)
  • 2
    • 65949084476 scopus 로고    scopus 로고
    • A computational framework for ultrastructural mapping of neural circuitry
    • Anderson J., Jones B., Yang J.-H., Shaw M., Watt C., Koshevoy P., et al. A computational framework for ultrastructural mapping of neural circuitry. PLoS Biol 2009, 7(3):e74.
    • (2009) PLoS Biol , vol.7 , Issue.3
    • Anderson, J.1    Jones, B.2    Yang, J.-H.3    Shaw, M.4    Watt, C.5    Koshevoy, P.6
  • 5
    • 34250830971 scopus 로고
    • Principal warps: thin-plate splines and the decomposition of deformations
    • Bookstein F.L. Principal warps: thin-plate splines and the decomposition of deformations. IEEE Trans Pattern Anal Mach Intell 1989, 11(6):567-585.
    • (1989) IEEE Trans Pattern Anal Mach Intell , vol.11 , Issue.6 , pp. 567-585
    • Bookstein, F.L.1
  • 6
    • 33749050824 scopus 로고    scopus 로고
    • Towards neural circuit reconstruction with volume electron microscopy techniques
    • October
    • Briggman K.L., Denk W. Towards neural circuit reconstruction with volume electron microscopy techniques. Curr Opin Neurobiol 2006, 16(October (5)):562-570.
    • (2006) Curr Opin Neurobiol , vol.16 , Issue.5 , pp. 562-570
    • Briggman, K.L.1    Denk, W.2
  • 7
    • 0028444940 scopus 로고
    • Computer-assisted registration, segmentation, and 3d reconstruction from images of neuronal tissue sections
    • June
    • Carlbom I., Terzopoulos D., Harris K.M. Computer-assisted registration, segmentation, and 3d reconstruction from images of neuronal tissue sections. IEEE Trans Med Imaging 1994, 13(June (2)).
    • (1994) IEEE Trans Med Imaging , vol.13 , Issue.2
    • Carlbom, I.1    Terzopoulos, D.2    Harris, K.M.3
  • 8
    • 84925245477 scopus 로고
    • Registration of translated and rotated images using finite Fourier transforms
    • Castro E.D., Morandi C. Registration of translated and rotated images using finite Fourier transforms. IEEE Trans Pattern Anal Mach Intell 1987, 9(5):700-703.
    • (1987) IEEE Trans Pattern Anal Mach Intell , vol.9 , Issue.5 , pp. 700-703
    • Castro, E.D.1    Morandi, C.2
  • 9
    • 33645297713 scopus 로고    scopus 로고
    • Wiring optimization can relate neuronal structure and function
    • Chen B.L., Hall D.H., Chklovskii D.B. Wiring optimization can relate neuronal structure and function. Proc Natl Acad Sci USA 2006, 103(12):4723-4728.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.12 , pp. 4723-4728
    • Chen, B.L.1    Hall, D.H.2    Chklovskii, D.B.3
  • 10
    • 0030269623 scopus 로고    scopus 로고
    • Deformable templates using large deformation kinematics
    • Christensen G., Rabbit R., Miller M. Deformable templates using large deformation kinematics. IEEE Trans Image Process 1996, 5(10):1435-1447.
    • (1996) IEEE Trans Image Process , vol.5 , Issue.10 , pp. 1435-1447
    • Christensen, G.1    Rabbit, R.2    Miller, M.3
  • 11
    • 0026710334 scopus 로고
    • Parallel circuits from cones to the on-beta ganglion cell
    • Cohen E.D., Sterling P. Parallel circuits from cones to the on-beta ganglion cell. Eur J Neurosci 1992, 4:506-520.
    • (1992) Eur J Neurosci , vol.4 , pp. 506-520
    • Cohen, E.D.1    Sterling, P.2
  • 12
    • 0037428928 scopus 로고    scopus 로고
    • Synaptic input to the on-off directionally selective ganglion cell in the rabbit retina
    • Dacheux R.F., Chimento M.F., Amthor F.R. Synaptic input to the on-off directionally selective ganglion cell in the rabbit retina. J Comp Neurol 2003, 456(3):267-278.
    • (2003) J Comp Neurol , vol.456 , Issue.3 , pp. 267-278
    • Dacheux, R.F.1    Chimento, M.F.2    Amthor, F.R.3
  • 14
    • 0031150152 scopus 로고    scopus 로고
    • A physics-based coordinate transformation for 3-d image matching
    • Davis M.H., Khotanzad A., Flamig D.P., Harms S.E. A physics-based coordinate transformation for 3-d image matching. IEEE Trans Med Imaging 1997, 16(3):317-328.
    • (1997) IEEE Trans Med Imaging , vol.16 , Issue.3 , pp. 317-328
    • Davis, M.H.1    Khotanzad, A.2    Flamig, D.P.3    Harms, S.E.4
  • 15
    • 14044262855 scopus 로고    scopus 로고
    • Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
    • Denk W., Horstmann H. Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. PLoS Biol 2004, 2(11):e329. 10.1371/journal.pbio.0020329.
    • (2004) PLoS Biol , vol.2 , Issue.11
    • Denk, W.1    Horstmann, H.2
  • 16
    • 0023684146 scopus 로고
    • Anatomical-functional correlation using an adjustable mri-based region of interest with positron emission tomography
    • Evans A.C., Beil C., Thompson S.M.C.J., Hakim A. Anatomical-functional correlation using an adjustable mri-based region of interest with positron emission tomography. J Cereb Blood Flow Metab 1988, 8:513-530.
    • (1988) J Cereb Blood Flow Metab , vol.8 , pp. 513-530
    • Evans, A.C.1    Beil, C.2    Thompson, S.M.C.J.3    Hakim, A.4
  • 17
    • 0035136165 scopus 로고    scopus 로고
    • Extending unbiased stereology of brain ultrastructure to three-dimensional volumes
    • Fiala J.C., Harris K.M. Extending unbiased stereology of brain ultrastructure to three-dimensional volumes. J Am Med Inform Assoc 2001, 8(1):1-16.
    • (2001) J Am Med Inform Assoc , vol.8 , Issue.1 , pp. 1-16
    • Fiala, J.C.1    Harris, K.M.2
  • 18
  • 20
    • 0026043845 scopus 로고
    • The posterior nervous system of the nematode caenorhaditis elegans: serial reconstruction of identified neurons and complete pattern of synaptic interactions
    • Hall D.H., Russell R.L. The posterior nervous system of the nematode caenorhaditis elegans: serial reconstruction of identified neurons and complete pattern of synaptic interactions. J Neurosci 1991, 11(1):1-22.
    • (1991) J Neurosci , vol.11 , Issue.1 , pp. 1-22
    • Hall, D.H.1    Russell, R.L.2
  • 21
    • 0037547168 scopus 로고    scopus 로고
    • Structural changes at dendritic spine synapses during long-term potentiation
    • Harris K.M., Fiala J.C., Ostroff L. Structural changes at dendritic spine synapses during long-term potentiation. Phil Trans R Soc Lond Ser B: Biol Sci 2003, 358(1432):745-748.
    • (2003) Phil Trans R Soc Lond Ser B: Biol Sci , vol.358 , Issue.1432 , pp. 745-748
    • Harris, K.M.1    Fiala, J.C.2    Ostroff, L.3
  • 22
    • 33750863459 scopus 로고    scopus 로고
    • Automating the collection of ultrathin serial sections for large volume tem reconstructions
    • Hayworth K.J., Kasthuri N., Schalek R., Lichtman J.W. Automating the collection of ultrathin serial sections for large volume tem reconstructions. Microsc Microanal 2006, 12:86-87.
    • (2006) Microsc Microanal , vol.12 , pp. 86-87
    • Hayworth, K.J.1    Kasthuri, N.2    Schalek, R.3    Lichtman, J.W.4
  • 23
    • 0019363273 scopus 로고
    • Three-dimensional electron-microscopy
    • Hoppe W. Three-dimensional electron-microscopy. Annu Rev Biophys Bioeng 1981, 10:563-592.
    • (1981) Annu Rev Biophys Bioeng , vol.10 , pp. 563-592
    • Hoppe, W.1
  • 26
    • 0030711952 scopus 로고    scopus 로고
    • Virtualized reality: constructing virtual worlds from real scenes
    • Kanade T., Rander P.W., Narayaman P.J. Virtualized reality: constructing virtual worlds from real scenes. IEEE Trans Multimedia 1997, 4(1):34-47.
    • (1997) IEEE Trans Multimedia , vol.4 , Issue.1 , pp. 34-47
    • Kanade, T.1    Rander, P.W.2    Narayaman, P.J.3
  • 27
    • 41149120500 scopus 로고    scopus 로고
    • Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling
    • Knott G., Marchman H., Wall D., Lich B. Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling. J Neurosci 2008, 28:2959-2964.
    • (2008) J Neurosci , vol.28 , pp. 2959-2964
    • Knott, G.1    Marchman, H.2    Wall, D.3    Lich, B.4
  • 28
    • 77957680050 scopus 로고    scopus 로고
    • Automatic assembly of tem mosaics and mosaic stacks using phase correlation. Tech. Rep. UUSCI-2007-004, Scientific Computing and Imaging Institute, University of Utah;
    • Koshevoy PA, Tasdizen T, Whitaker RT. Automatic assembly of tem mosaics and mosaic stacks using phase correlation. Tech. Rep. UUSCI-2007-004, Scientific Computing and Imaging Institute, University of Utah; 2007.
    • (2007)
    • Koshevoy, P.A.1    Tasdizen, T.2    Whitaker, R.T.3
  • 31
    • 6944222476 scopus 로고    scopus 로고
    • Oxford University Press, [Ch. A Survey of medical image registration]
    • Maintz J.B.A., Viergever M.A. Navigated brain surgery 1999, Oxford University Press, p. 117-36 [Ch. A Survey of medical image registration].
    • (1999) Navigated brain surgery , pp. 117-36
    • Maintz, J.B.A.1    Viergever, M.A.2
  • 32
    • 25644458666 scopus 로고    scopus 로고
    • Automated electron microscope tomography using robust prediction of specimen movements
    • Mastronarde D.N. Automated electron microscope tomography using robust prediction of specimen movements. J Struct Biol 2005, 152:36-51.
    • (2005) J Struct Biol , vol.152 , pp. 36-51
    • Mastronarde, D.N.1
  • 33
    • 77957666432 scopus 로고    scopus 로고
    • Automation of 3d reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs
    • September
    • Mishchenko Y. Automation of 3d reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs. J Neurosci Methods 2008, (September).
    • (2008) J Neurosci Methods
    • Mishchenko, Y.1
  • 35
    • 65649134709 scopus 로고    scopus 로고
    • Globally optimal stitching of tiled 3d microscopic image acquisitions
    • Preibisch S., Saafeld S., Tomancak P. Globally optimal stitching of tiled 3d microscopic image acquisitions. Bioinformatics 2009, 25(11):1463-1465.
    • (2009) Bioinformatics , vol.25 , Issue.11 , pp. 1463-1465
    • Preibisch, S.1    Saafeld, S.2    Tomancak, P.3
  • 37
    • 84947425055 scopus 로고    scopus 로고
    • Approximating thin-plate splines for elastic registration: Integration of landmark errors and orientation attributes
    • Rohr K., Fornefett M., Stiehl H.S. Approximating thin-plate splines for elastic registration: Integration of landmark errors and orientation attributes. Lect Notes Comput Sci 1999, 1613:252-265.
    • (1999) Lect Notes Comput Sci , vol.1613 , pp. 252-265
    • Rohr, K.1    Fornefett, M.2    Stiehl, H.S.3
  • 38
    • 0242573585 scopus 로고    scopus 로고
    • Spline-based elastic image registration: integration of landmark errors and orientation attributes
    • Rohr K., Fornefett M., Stiehl H.S. Spline-based elastic image registration: integration of landmark errors and orientation attributes. Comput Vision Image Understand 2003, 90(2):153-168.
    • (2003) Comput Vision Image Understand , vol.90 , Issue.2 , pp. 153-168
    • Rohr, K.1    Fornefett, M.2    Stiehl, H.S.3
  • 39
    • 0036647433 scopus 로고    scopus 로고
    • Construction of panaromic image mosaics with global and local alignment
    • Shum H.-Y., Szeliski R. Construction of panaromic image mosaics with global and local alignment. Int J Comput Vision 2002, 48(2).
    • (2002) Int J Comput Vision , vol.48 , Issue.2
    • Shum, H.-Y.1    Szeliski, R.2
  • 40
    • 31144436747 scopus 로고    scopus 로고
    • The human connectome: a structural description of the human brain
    • September
    • Sporns O., Tononi G., Kotter R. The human connectome: a structural description of the human brain. PLoS Comput Biol 2005, 1(September):e42.
    • (2005) PLoS Comput Biol , vol.1
    • Sporns, O.1    Tononi, G.2    Kotter, R.3
  • 41
    • 35448960510 scopus 로고    scopus 로고
    • Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis
    • Sun M.G., Williams J., Munoz-Pinedo C., Perkins G.A., Brown J.M., Ellisman M.H., et al. Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis. Nat Cell Biol 2007, 9:1057-1065.
    • (2007) Nat Cell Biol , vol.9 , pp. 1057-1065
    • Sun, M.G.1    Williams, J.2    Munoz-Pinedo, C.3    Perkins, G.A.4    Brown, J.M.5    Ellisman, M.H.6
  • 44
    • 0030142603 scopus 로고    scopus 로고
    • New feature points based on geometric invariants for 3d image registration
    • Thirion J. New feature points based on geometric invariants for 3d image registration. Int J Comput Vis 1996, 18(2):121-137.
    • (1996) Int J Comput Vis , vol.18 , Issue.2 , pp. 121-137
    • Thirion, J.1
  • 45
    • 0003724235 scopus 로고    scopus 로고
    • Wiley-Interscience, New York, A. Toga (Ed.)
    • Brain warping 1999, Wiley-Interscience, New York. A. Toga (Ed.).
    • (1999) Brain warping
  • 46
    • 33747828653 scopus 로고    scopus 로고
    • Robust mosaicing with correction of motion distortions and tissue deformations for in vivo fibered microscopy
    • Vercauteren T., Perchant A., Malandain G., Pennec X., Ayache N. Robust mosaicing with correction of motion distortions and tissue deformations for in vivo fibered microscopy. Med Image Anal 2006, 673-692.
    • (2006) Med Image Anal , pp. 673-692
    • Vercauteren, T.1    Perchant, A.2    Malandain, G.3    Pennec, X.4    Ayache, N.5
  • 48
    • 0012934579 scopus 로고
    • Contrast limited adaptive histogram equalization
    • Zuiderveld K. Contrast limited adaptive histogram equalization. Graphics gems IV 1994, 474-485.
    • (1994) Graphics gems IV , pp. 474-485
    • Zuiderveld, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.