Isolation and identification of endophytic fungi in roots of nine Holcoglossum plants (Orchidaceae) collected from Yunnan, Guangxi, and Hainan Provinces of China

Current Microbiology

Volumn 64, Issue 2, 2012, Pages 140-147

  Tan, Xiao Ming ^a,b   Chen, Xiao Mei ^a   Wang, Chun Lan ^a   Jin, Xiao Hua ^c   Cui, Jin Long ^a   Chen, Juan ^a   Guo, Shun Xing ^a   Zhao, Li Fang ^a  

^a INSTITUTE OF MEDICINAL PLANT DEVELOPMENT   (China)

^b Guangxi Botanical Garden of Medicinal Plants   (China)

^c INSTITUTE OF BOTANY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AGARICOMYCETES; ALTERNARIA; ANAMORPH; ARTICLE; CHINA; CLADOSPORIUM; CLONOSTACHYS; COLLETOTRICHUM; CONTROLLED STUDY; COSMOSPORA; CRYPTOSPORIOPSIS; CYLINDROCARPON; DIDYMELLA; DOTHIDEOMYCETES; ENDOMYCORRHIZA; ENDOPHYTE; EPULORHIZA; FUNGAL STRAIN; FUNGUS; FUNGUS CULTURE; FUNGUS HYPHAE; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; FUSARIUM; HOLCOGLOSSUM; LEOTIOMYCETES; LEPTOSPHAERIA; MOLECULAR PHYLOGENY; MYRMECRIDIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; ORCHIDACEAE; PARACONIOTHYRIUM; PHOMOPSIS; PLANT ROOT; POPULATION ABUNDANCE; PRIORITY JOURNAL; PYRENOCHAETA; SEQUENCE ANALYSIS; SORDARIOMYCETES; SPECIES DIVERSITY; STEPHANONECTRIA; TULASNELLA; TULASNELLA CALOSPORA; UNINDEXED SEQUENCE;

BIODIVERSITY; CHINA; ENDOPHYTES; FUNGI; MOLECULAR SEQUENCE DATA; ORCHIDACEAE; PHYLOGENY; PLANT ROOTS; SYMBIOSIS;

ALTERNARIA; CLADOSPORIUM; CLONOSTACHYS; COLLETOTRICHUM; COSMOSPORA; CRYPTOSPORIOPSIS; CYLINDROCARPON; DIDYMELLA; DOTHIDEOMYCETES; EPULORHIZA; FUNGI; FUSARIUM; HOLCOGLOSSUM; HOLCOGLOSSUM FLAVESCENS; LEOTIOMYCETES; LEPTOSPHAERIA; ORCHIDACEAE; PARACONIOTHYRIUM; PHOMOPSIS; PYRENOCHAETA; SORDARIOMYCETES; STEPHANONECTRIA; TULASNELLA; TULASNELLA CALOSPORA;

EID: 84856977077     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-011-0045-8     Document Type: Article

References (31)

1. SF Altschul TL Madden AA Schaffer J Zhang, et al. 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 9254694 10.1093/nar/25.17.3389 1:CAS:528:DyaK2sXlvFyhu7w%3D (Pubitemid 27359211)
2. Bailey JA, O'Connell RJ, Pring RJ, Nash C (1992) Infection strategies of Colletotrichum species. In: Bailey JA, Jeger MJ (eds) Colletotrichum: biology, pathology and control. CAB International, Wallingford, pp 88-120
3. P Bayman LL LebrÓn RL Tremblay DJ Lodge 1997 Variation in endophytic fungi from roots and leaves of Lepanthes (Orchidaceae) New Phytol 135 143 149 10.1046/j.1469-8137.1997.00618.x (Pubitemid 28021137)
4. Bayman P, Otero JT (2006) Microbial endophytes of orchid roots. In: Schulz B, Boyle C, Sieber T (eds) Microbial root endophytes. Springer, New York, pp 153-173
5. Brundrett M, Sivasithamparam K, Ramsay M, Krauss S, Taylor R, Bunn E, Hicks A, Karim NA, Debeljak N, Mursidawati S, Dixon B, Batty A, Bower C, Brown A (2001) Orchid conservation techniques manual, first international orchid conservation congress-training course. Plant Science, King Park & Botanic Garden
6. Brundrett MC (2006) Understanding the roles of multifunctional mycorrhizal and endophytic fungi. In: Schulz B, Boyle C, Sieber T (eds) Microbial root endophyte. Springer-Verlag, Berlin, pp 281-293
7. SC Chen 1965 A primitive new orchid genus Tangtsinia and its meaning in phylogeny Acta Phytotaxonomica Sinica 10 3 193 206
8. Cribb PJ, Kell SP, Dixon KW, Barrett RL (2003) Orchid conservation-a global perspective. In: Dixon KW, Kell SP, Barrett RL, Cribb PJ (eds) Orchid conservation. Natural History Publication, Kota Kinabalu, pp 1-24
9. XH Jin SC Chen HN Qin 2005 Pollination system of Holcoglossum rupestre (Orchidaceae): a special and unstable system Pl Syst Evol 254 31 38 10.1007/s00606-005-0310-z (Pubitemid 41187192)
10. Jin XH, Jeffrey JW (2009) HOLCOGLOSSUM Schlechter, Repertorium Specierum Novarum Regni Vegetabilis 4:285 (1919), vol 25. Flora of China, pp 499-502
11. S Kumar K Tamura M Nei 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163 15260895 10.1093/bib/5.2.150 1:CAS:528:DC%2BD2cXntFGqu7s%3D
12. YB Luo JS Jia CL Wang 2003 A general review of the conservation status of Chinese orchids Biodivers Sci 11 1 70 77
13. M Ma TK Tan SM Wong 2003 Identification and molecular phylogeny of Epulorhiza isolates from tropical orchids Mycol Res 107 PT 9 1041 1049 14563130 10.1017/S0953756203008281 1:CAS:528:DC%2BD3sXnsF2mtb4%3D (Pubitemid 37216162)
14. S Nontachaiyapoom S Sasirat L Manoch 2010 Isolation and identification of Rhizoctonia-like fungi from roots of three orchid genera, Paphiopedilum, Dendrobium, and Cymbidium, collected in Chiang Rai and Chiang Mai provinces of Thailand Mycorrhiza 20 7 459 471 20107843
15. JT Otero JD Ackerman P Bayman 2002 Diversity and host specificity of endophytic rhizoctonia-like fungi from tropical orchids Am J Bot 89 1852 1858 10.3732/ajb.89.11.1852 1:CAS:528:DC%2BD38XpsV2kt7c%3D (Pubitemid 35442075)
16. JT Otero NS Flanagan EA Herre, et al. 2007 Widespread mycorrhizal specificity correlates to mycorrhizal function in the neotropical, epiphytic orchid Ionopsis utricularioides (Orchidaceae) AmJ Bot 94 1944 1950 10.3732/ajb.94.12.1944
17. OL Pereira MCM Kasuya AC Borges EF de Araujo 2005 Morphological and molecular characterization of mycorrhizal fungi isolated from neotropical orchids in Brazil Can J Bot 83 54 65 10.1139/b04-151 1:CAS:528: DC%2BD2MXis1WlsL4%3D (Pubitemid 40483053)
18. Pielou EC (1975) Ecological diversity. John Wiley, New York, p 165
19. RJ Rodriguez J Henson E Van Volkenburgh M Hoy L Wright F Beckwith Y Kim RS Redman 2008 Stress tolerance in plantsvia habitat-adapted symbiosis ISME J 2 404 416 18256707 10.1038/ismej.2007.106 (Pubitemid 351518399)
20. C Ruangwut D Bernard V Suyanee B Boonsom L Saisamorn 2010 Endophytic fungifrom Pecteilis susannae (L.) Rafin (Orchidaceae), a threatened terrestrial orchid in Thailand Mycorrhiza 21 3 221 229
21. MS Sánchez GF Bills I Zabalgogeazcoa 2008 Diversity and structure of the fungal endophytic assemblages from two sympatric coastal grasses Fungal Divers 33 87 100
22. G Seidenfaden 1988 Orchid genera in Thailand XIV. Fifty-nine vandoid genera Opera Bot 95 304 306
23. G Seidenfaden 1992 The orchids of indochina Opera Bot 114 441 444
24. Stone JK, Bacon CW, White JF (2000) An overview of endophytic microbes: endophytism defined. In: Bacon CW, White JF (eds) Microbial endophytes. Marcel Dekker, New York, pp 3-29
25. JP Suárez M Wei A Abele S Garnica F Oberwinkler I Kottke 2006 Diverse tulasnelloid fungi form mycorrhizas with epiphytic orchids in an Andean cloud forest Mycol Res 110 1257 1270 17081740 10.1016/j.mycres.2006.08.004 (Pubitemid 44711948)
26. ND Swarts KW Dixon 2009 Terrestrial orchid conservation in the age of extinction Ann Bot 104 543 556 10.1093/aob/mcp025 19218582 10.1093/aob/mcp025
27. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 17488738 10.1093/molbev/msm092 1:CAS:528:DC%2BD2sXpsVGrsL8%3D (Pubitemid 47236692)
28. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 9396791 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D (Pubitemid 28022245)
29. Tsi ZH (1999) The subtribe aeridinae. In: Tsi ZH (ed) Flora reipublicae popularis sinicae tomus, vol 19. Science Press, Beijing, pp 274-437
30. White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, New York, pp 315-322
31. ZL Yuan YC Chen Y Yang 2009 Diverse non-mycorrhizal fungal endophytes inhabiting an epiphytic, medicinal orchid (Dendrobium nobile): estimation and characterization World J Microbiol Biotechnol 25 295 303 10.1007/s11274-008- 9893-1