-
1
-
-
77954257799
-
ConSurf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
-
Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N (2010) ConSurf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res 38 Suppl:W529-W533
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.SUPPL.
-
-
Ashkenazy, H.1
Erez, E.2
Martz, E.3
Pupko, T.4
Ben-Tal, N.5
-
2
-
-
44649142702
-
2 acquisition by the CBB cycle
-
2 acquisition by the CBB cycle. J Exp Bot 59:1525-1541
-
(2008)
J Exp Bot
, vol.59
, pp. 1525-1541
-
-
Badger, M.R.1
Bek, E.J.2
-
3
-
-
0037318701
-
2 concentrating mechanisms in cyanobacteria: Molecular components, their diversity and evolution
-
2 concentrating mechanisms in cyanobacteria: Molecular components, their diversity and evolution. J Exp Bot 54:609-622
-
(2003)
J Exp Bot
, vol.54
, pp. 609-622
-
-
Badger, M.R.1
Price, G.D.2
-
4
-
-
0032886650
-
The correlation of the gene csoS2 of the carboxysome operon with two polypeptides of the carboxysome in Thiobacillus neapolitanus
-
Baker SH, Lorbach SC, Rodriguez-Buey M, Williams DS, Aldrich HC, Shively JM (1999) The correlation of the gene csoS2 of the carboxysome operon with two polypeptides of the carboxysome in Thiobacillus neapolitanus. Arch Microbiol 172:233-239
-
(1999)
Arch Microbiol
, vol.172
, pp. 233-239
-
-
Baker, S.H.1
Lorbach, S.C.2
Rodriguez-Buey, M.3
Williams, D.S.4
Aldrich, H.C.5
Shively, J.M.6
-
5
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA (2001) Electrostatics of nanosystems: Application to microtubules and the ribosome. Proc Natl Acad Sci USA 98:10037-10041
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
7
-
-
84886639798
-
Bioinformatic identification and structural characterization of a new carboxysome shell protein
-
in press In Burnap RL, Vermaas W (eds)
-
Cai F, Sandh G, Kerfeld CA (in press) Bioinformatic identification and structural characterization of a new carboxysome shell protein. In: Burnap RL, Vermaas W (eds) Functional genomics and evolution of photosynthetic systems
-
Functional Genomics and Evolution of Photosynthetic Systems
-
-
Cai, F.1
Sandh, G.2
Kerfeld, C.A.3
-
8
-
-
0020589050
-
Characterization of a homogenous preparation of carboxysomes from Thiobacillus neapolitanus
-
Cannon GC, Shively JM (1983) Characterization of a homogenous preparation of carboxysomes from Thiobacillus neapolitanus. Arch Microbiol 134:52-59
-
(1983)
Arch Microbiol
, vol.134
, pp. 52-59
-
-
Cannon, G.C.1
Shively, J.M.2
-
9
-
-
0035653447
-
Microcompartments in prokaryotes: Carboxysomes and related polyhedra
-
Cannon GC, Bradburne CE, Aldrich HC, Baker SH, Heinhorst S, Shively JM (2001) Microcompartments in prokaryotes: Carboxysomes and related polyhedra. Appl Environ Microbiol 67:5351-5361
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5351-5361
-
-
Cannon, G.C.1
Bradburne, C.E.2
Aldrich, H.C.3
Baker, S.H.4
Heinhorst, S.5
Shively, J.M.6
-
10
-
-
38649141503
-
A multiprotein bicarbonate dehydration complex essential to carboxysome function in cyanobacteria
-
Cot SS-W, So AK-C, Espie GS (2008) A multiprotein bicarbonate dehydration complex essential to carboxysome function in cyanobacteria. J Bacteriol 190:936-945
-
(2008)
J Bacteriol
, vol.190
, pp. 936-945
-
-
Cot, S.S.-W.1
So, A.K.-C.2
Espie, G.S.3
-
11
-
-
50849120064
-
Structure of the PduU shell protein from the Pdu microcompartment of Salmonella
-
Crowley CS, Sawaya MR, Bobik TA, Yeates TO (2008) Structure of the PduU shell protein from the Pdu microcompartment of Salmonella. Structure 16:1324-1332
-
(2008)
Structure
, vol.16
, pp. 1324-1332
-
-
Crowley, C.S.1
Sawaya, M.R.2
Bobik, T.A.3
Yeates, T.O.4
-
14
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14:755-763
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
15
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
16
-
-
34547855512
-
Long-term response towards inorganic carbon limitation in wild type and glycolate turnover mutants of the cyanobacterium Synechocystis sp. strain PCC 6803
-
doi:10.1104/pp.107.103341
-
Eisenhut M, von Wobeser EA, Jonas L, Schubert H, Ibelings BW, Bauwe H, Matthijs HCP, Hagemann M (2007) Long-term response towards inorganic carbon limitation in wild type and glycolate turnover mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Physiol. doi:10.1104/pp.107.103341
-
(2007)
Plant Physiol
-
-
Eisenhut, M.1
Von Wobeser, E.A.2
Jonas, L.3
Schubert, H.4
Ibelings, B.W.5
Bauwe, H.6
Matthijs, H.C.P.7
Hagemann, M.8
-
18
-
-
0014484341
-
Ultrastructure of blue-green algae
-
Gantt E, Conti SF (1969) Ultrastructure of blue-green algae. J Bacteriol 97:1486-1493
-
(1969)
J Bacteriol
, vol.97
, pp. 1486-1493
-
-
Gantt, E.1
Conti, S.F.2
-
19
-
-
34548276117
-
The structure of isolated Synechococcus strain WH8102 carboxysomes as revealed by electron cryotomography
-
Iancu CV, Ding HJ, Morris DM, Dias DP, Gonzales AD, Martino A, Jensen GJ (2007) The structure of isolated Synechococcus strain WH8102 carboxysomes as revealed by electron cryotomography. J Mol Biol 372:764-773
-
(2007)
J Mol Biol
, vol.372
, pp. 764-773
-
-
Iancu, C.V.1
Ding, H.J.2
Morris, D.M.3
Dias, D.P.4
Gonzales, A.D.5
Martino, A.6
Jensen, G.J.7
-
20
-
-
23244439942
-
Protein structures forming the shell of primitive bacterial organelles
-
Kerfeld CA, Sawaya MR, Tanaka S, Nguyen CV, Phillips M, Beeby M, Yeates TO (2005) Protein structures forming the shell of primitive bacterial organelles. Science 309:936-938
-
(2005)
Science
, vol.309
, pp. 936-938
-
-
Kerfeld, C.A.1
Sawaya, M.R.2
Tanaka, S.3
Nguyen, C.V.4
Phillips, M.5
Beeby, M.6
Yeates, T.O.7
-
22
-
-
68949220061
-
Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport
-
Klein MG, Zwart P, Bagby SC, Cai F, Chisholm SW, Heinhorst S, Cannon GC, Kerfeld CA (2009) Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport. J Mol Biol 392:319-333
-
(2009)
J Mol Biol
, vol.392
, pp. 319-333
-
-
Klein, M.G.1
Zwart, P.2
Bagby, S.C.3
Cai, F.4
Chisholm, S.W.5
Heinhorst, S.6
Cannon, G.C.7
Kerfeld, C.A.8
-
23
-
-
0007962916
-
Immunological and ultrastructural characterization of the photosynthetic complexes of the prochlorophyte Prochlorococcus (Oxychlorobacteria)
-
Lichtle C, Thomas JC, Spilar A, Partensky F (1995) Immunological and ultrastructural characterization of the photosynthetic complexes of the prochlorophyte Prochlorococcus (Oxychlorobacteria). J Phycol 31:934-941
-
(1995)
J Phycol
, vol.31
, pp. 934-941
-
-
Lichtle, C.1
Thomas, J.C.2
Spilar, A.3
Partensky, F.4
-
24
-
-
35748946615
-
Analysis of carboxysomes from Synechococcus PCC7942 reveals multiple RubisCO complexes with carboxysomal proteins CcmM and CcaA
-
Long BM, Badger MR, Whitney SM, Price GD (2007) Analysis of carboxysomes from Synechococcus PCC7942 reveals multiple RubisCO complexes with carboxysomal proteins CcmM and CcaA. J Biol Chem 282:29323-29335
-
(2007)
J Biol Chem
, vol.282
, pp. 29323-29335
-
-
Long, B.M.1
Badger, M.R.2
Whitney, S.M.3
Price, G.D.4
-
25
-
-
77951980276
-
Functional cyanobacterial b-carboxysomes have an absolute requirement for both long and short forms of the CcmM protein
-
Long BM, Tucker L, Badger MR, Price GD (2010) Functional cyanobacterial b-carboxysomes have an absolute requirement for both long and short forms of the CcmM protein. Plant Physiol 153:285-293
-
(2010)
Plant Physiol
, vol.153
, pp. 285-293
-
-
Long, B.M.1
Tucker, L.2
Badger, M.R.3
Price, G.D.4
-
26
-
-
0034490454
-
Isolation of ccmKLMN genes from the marine cyanobacterium Synechococcus sp. PCC7002 and evidence that CcmM is essential for carboxysome assembly
-
Ludwig M, Sultemeyer D, Price GD (2000) Isolation of ccmKLMN genes from the marine cyanobacterium Synechococcus sp. PCC7002 and evidence that CcmM is essential for carboxysome assembly. J Phycol 36:1109-1118
-
(2000)
J Phycol
, vol.36
, pp. 1109-1118
-
-
Ludwig, M.1
Sultemeyer, D.2
Price, G.D.3
-
28
-
-
0000096307
-
Photosynthesis and photorespiration in a mutant of the cyanobacterium Synechocystis PCC- 6803 lacking carboxysomes
-
Marcus Y, Berry J, Pierce J (1992) Photosynthesis and photorespiration in a mutant of the cyanobacterium Synechocystis PCC- 6803 lacking carboxysomes. Planta 187:511-516
-
(1992)
Planta
, vol.187
, pp. 511-516
-
-
Marcus, Y.1
Berry, J.2
Pierce, J.3
-
29
-
-
47249117924
-
Biochemical and structural insights into bacterial organelle form and biogenesis
-
Parsons JB, Dinesh SD, Deery E, Leech HK, Brindley AA, Heldt D, Frank S, Smales CM, Lunsdorf H, Rambach A et al (2008) Biochemical and structural insights into bacterial organelle form and biogenesis. J Biol Chem 283:14366-14375
-
(2008)
J Biol Chem
, vol.283
, pp. 14366-14375
-
-
Parsons, J.B.1
Dinesh, S.D.2
Deery, E.3
Leech, H.K.4
Brindley, A.A.5
Heldt, D.6
Frank, S.7
Smales, C.M.8
Lunsdorf, H.9
Rambach, A.10
-
30
-
-
0033009854
-
Prochlorococcus, a marine photosynthetic prokaryote of global significance
-
Partensky F, Hess WR, Vaulot D (1999) Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 63:106-127
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 106-127
-
-
Partensky, F.1
Hess, W.R.2
Vaulot, D.3
-
31
-
-
77249103054
-
Structural basis of the oxidative activation of the carboxysomal gamma-carbonic anhydrase
-
Peña KL, Castel SE, de Araujo C, Espie GS, Kimber MS (2010) Structural basis of the oxidative activation of the carboxysomal gamma-carbonic anhydrase, CcmM. Proc Natl Acad Sci USA 107:2455-2460
-
(2010)
CcmM. Proc Natl Acad Sci USA
, vol.107
, pp. 2455-2460
-
-
Pena, K.L.1
Castel, S.E.2
De Araujo, C.3
Espie, G.S.4
Kimber, M.S.5
-
32
-
-
0001202064
-
Association of carbonic anhydrase activity with carboxysomes isolated from the cyanobacterium Synechococcus PCC7942
-
Price GD, Coleman JR, Badger MR (1992) Association of carbonic anhydrase activity with carboxysomes isolated from the cyanobacterium Synechococcus PCC7942. Plant Physiol 100: 784-793
-
(1992)
Plant Physiol
, vol.100
, pp. 784-793
-
-
Price, G.D.1
Coleman, J.R.2
Badger, M.R.3
-
33
-
-
67049117718
-
Crystal structure of the EutL shell protein of the ethanolamine ammonia lyase microcompartment
-
Sagermann M, Ohtaki A, Nikolakakis K (2009) Crystal structure of the EutL shell protein of the ethanolamine ammonia lyase microcompartment. Proc Natl Acad Sci USA 106: 8883-8887
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 8883-8887
-
-
Sagermann, M.1
Ohtaki, A.2
Nikolakakis, K.3
-
34
-
-
33646365079
-
The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two
-
Sawaya MR, Cannon GC, Heinhorst S, Tanaka S, Williams EB, Yeates TO, Kerfeld CA (2006) The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two. J Biol Chem 281:7546-7555
-
(2006)
J Biol Chem
, vol.281
, pp. 7546-7555
-
-
Sawaya, M.R.1
Cannon, G.C.2
Heinhorst, S.3
Tanaka, S.4
Williams, E.B.5
Yeates, T.O.6
Kerfeld, C.A.7
-
35
-
-
33750822769
-
Structure of Halothiobacillus neapolitanus carboxysomes by cryo-electron tomography
-
Schmid MF, Paredes AM, Khant HA, Soyer F, Aldrich HC, Chiu W, Shively JM (2006) Structure of Halothiobacillus neapolitanus carboxysomes by cryo-electron tomography. J Mol Biol 364:526-535
-
(2006)
J Mol Biol
, vol.364
, pp. 526-535
-
-
Schmid, M.F.1
Paredes, A.M.2
Khant, H.A.3
Soyer, F.4
Aldrich, H.C.5
Chiu, W.6
Shively, J.M.7
-
37
-
-
0015816557
-
Functional organelles in prokaryotes: Polyhedral inclusions (carboxysomes) of Thiobacillus neapolitanus
-
Shively JM, Ball F, Brown DH, Saunders RE (1973) Functional organelles in prokaryotes: Polyhedral inclusions (carboxysomes) of Thiobacillus neapolitanus. Science 182:584-586
-
(1973)
Science
, vol.182
, pp. 584-586
-
-
Shively, J.M.1
Ball, F.2
Brown, D.H.3
Saunders, R.E.4
-
38
-
-
0030404988
-
HOLE: A program for the analysis of the pore dimensions of ion channel structural models
-
Smart OS, Neduvelil JG, Wang X, Wallace BA, Sansom MS (1996) HOLE: A program for the analysis of the pore dimensions of ion channel structural models. J Mol Graph 14:354-360, 376
-
(1996)
J Mol Graph
, vol.14
, Issue.354-360
, pp. 376
-
-
Smart, O.S.1
Neduvelil, J.G.2
Wang, X.3
Wallace, B.A.4
Sansom, M.S.5
-
39
-
-
0036941660
-
Characterization of a mutant lacking carboxysomal carbonic anhydrase from the cyanobacterium Synechocystis PCC6803
-
So AK-C, John-McKay M, Espie GS (2002) Characterization of a mutant lacking carboxysomal carbonic anhydrase from the cyanobacterium Synechocystis PCC6803. Planta 214:456-467
-
(2002)
Planta
, vol.214
, pp. 456-467
-
-
So, A.K.-C.1
John-McKay, M.2
Espie, G.S.3
-
40
-
-
0032840522
-
Microbial ribulose 1, 5-bisphosphate carboxylase/ oxygenase: A different perspective
-
Tabita FR (1999) Microbial ribulose 1, 5-bisphosphate carboxylase/ oxygenase: A different perspective. Photosynth Res 60:1-28
-
(1999)
Photosynth Res
, vol.60
, pp. 1-28
-
-
Tabita, F.R.1
-
41
-
-
39749132210
-
Atomic-level models of the bacterial carboxysome shell
-
Tanaka S, Kerfeld CA, Sawaya MR, Cai F, Heinhorst S, Cannon GC, Yeates TO (2008) Atomic-level models of the bacterial carboxysome shell. Science 319:1083-1086
-
(2008)
Science
, vol.319
, pp. 1083-1086
-
-
Tanaka, S.1
Kerfeld, C.A.2
Sawaya, M.R.3
Cai, F.4
Heinhorst, S.5
Cannon, G.C.6
Yeates, T.O.7
-
42
-
-
58149456903
-
Insights from multiple structures of the shell proteins from the beta-carboxysome
-
Tanaka S, Sawaya MR, Phillips M, Yeates TO (2009) Insights from multiple structures of the shell proteins from the beta-carboxysome. Protein Sci 18:108-120
-
(2009)
Protein Sci
, vol.18
, pp. 108-120
-
-
Tanaka, S.1
Sawaya, M.R.2
Phillips, M.3
Yeates, T.O.4
-
43
-
-
77950863797
-
Metabolic streamlining in an openocean nitrogen-fixing cyanobacterium
-
Tripp HJ, Bench SR, Turk KA, Foster RA, Desany BA, Niazi F, Affourtit JP, Zehr JP (2010) Metabolic streamlining in an openocean nitrogen-fixing cyanobacterium. Nature 464:90-94
-
(2010)
Nature
, vol.464
, pp. 90-94
-
-
Tripp, H.J.1
Bench, S.R.2
Turk, K.A.3
Foster, R.A.4
Desany, B.A.5
Niazi, F.6
Affourtit, J.P.7
Zehr, J.P.8
-
44
-
-
34250347772
-
Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome
-
Tsai Y, Sawaya MR, Cannon GC, Cai F, Williams EB, Heinhorst S, Kerfeld CA, Yeates TO (2007) Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome. PLoS Biol 5:e144
-
(2007)
PLoS Biol
, vol.5
-
-
Tsai, Y.1
Sawaya, M.R.2
Cannon, G.C.3
Cai, F.4
Williams, E.B.5
Heinhorst, S.6
Kerfeld, C.A.7
Yeates, T.O.8
-
45
-
-
69949153137
-
Analysis of lattice-translocation disorder in the layered hexagonal structure of carboxysome shell protein CsoS1C
-
Tsai Y, Sawaya MR, Yeates TO (2009) Analysis of lattice-translocation disorder in the layered hexagonal structure of carboxysome shell protein CsoS1C. Acta Crystallogr D 65:980-988
-
(2009)
Acta Crystallogr D.
, vol.65
, pp. 980-988
-
-
Tsai, Y.1
Sawaya, M.R.2
Yeates, T.O.3
-
47
-
-
3042728092
-
The protein target list of the Northeast Structural Genomics Consortium
-
Wunderlich Z, Acton TB, Liu J, Kornhaber G, Everett J, Carter P, Lan N, Echols N, Gerstein M, Rost B et al (2004) The protein target list of the Northeast Structural Genomics Consortium. Proteins 56:181-187
-
(2004)
Proteins
, vol.56
, pp. 181-187
-
-
Wunderlich, Z.1
Acton, T.B.2
Liu, J.3
Kornhaber, G.4
Everett, J.5
Carter, P.6
Lan, N.7
Echols, N.8
Gerstein, M.9
Rost, B.10
-
48
-
-
49649111573
-
Protein-based organelles in bacteria: Carboxysomes and related microcompartments
-
Yeates TO, Kerfeld CA, Heinhorst S, Cannon GC, Shively JM (2008) Protein-based organelles in bacteria: Carboxysomes and related microcompartments. Nat Rev Microbiol 6:681-691
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 681-691
-
-
Yeates, T.O.1
Kerfeld, C.A.2
Heinhorst, S.3
Cannon, G.C.4
Shively, J.M.5
|