메뉴 건너뛰기




Volumn 23, Issue 1, 2012, Pages 24-42

A short and simple improved-primer extension Preamplification (I-PEP) procedure for whole genome amplification (WGA) of bovine cells

Author keywords

Bovine; Genomic DNA (gDNA); Pre implantation genetic diagnosis (PGD); Whole genome amplification (WGA)

Indexed keywords

DNA; PRIMER DNA;

EID: 84856891037     PISSN: 10495398     EISSN: 15322378     Source Type: Journal    
DOI: 10.1080/10495398.2011.630907     Document Type: Article
Times cited : (8)

References (55)
  • 1
    • 0035578660 scopus 로고    scopus 로고
    • Practical considerations of embryo manipulation: Preimplantation genetic typing
    • Garcia JF. Practical considerations of embryo manipulation: Preimplantation genetic typing. Theriogenology 2001; 56:1393-1399.
    • (2001) Theriogenology , vol.56 , pp. 1393-1399
    • Garcia, J.F.1
  • 3
    • 0035984415 scopus 로고    scopus 로고
    • Sex determination of bovine embryo blastomeres by fluorogenic probes
    • Virta J, Markola J, Peippo J, Markkula M, Vilkki J. Sex determination of bovine embryo blastomeres by fluorogenic probes. Theriogenology 2002; 57:2229-2236.
    • (2002) Theriogenology , vol.57 , pp. 2229-2236
    • Virta, J.1    Markola, J.2    Peippo, J.3    Markkula, M.4    Vilkki, J.5
  • 5
    • 33847153470 scopus 로고    scopus 로고
    • Whole genome amplification from single cells in preimplantation genetic diagnosis and prenatal diagnosis
    • Peng W, Takabayashi H, Ikawa K. Whole genome amplification from single cells in preimplantation genetic diagnosis and prenatal diagnosis. Eur J Obstet Gynecol Reprod Biol 2007; 131:13-20.
    • (2007) Eur J Obstet Gynecol Reprod Biol , vol.131 , pp. 13-20
    • Peng, W.1    Takabayashi, H.2    Ikawa, K.3
  • 6
    • 77049097608 scopus 로고    scopus 로고
    • Specific and complete human genome amplification with improved yield achieved by phi29 DNA polymerase and a novel primer at elevated temperature
    • Alsmadi O, Alkayal F, Monies D, Meyer BF. Specific and complete human genome amplification with improved yield achieved by phi29 DNA polymerase and a novel primer at elevated temperature. BMC Res Notes 2009; 2:e48.
    • (2009) BMC Res Notes , vol.2
    • Alsmadi, O.1    Alkayal, F.2    Monies, D.3    Meyer, B.F.4
  • 7
    • 0026755807 scopus 로고
    • Whole genome amplification from a single cell: Implications for genetic analysis
    • Zhang L, Cui X, Schmitt K, Hubert R, Navidi W, Arnheim N. Whole genome amplification from a single cell: implications for genetic analysis. Proc Natl Acad Sci 1992; 89:5847-5851.
    • (1992) Proc Natl Acad Sci , vol.89 , pp. 5847-5851
    • Zhang, L.1    Cui, X.2    Schmitt, K.3    Hubert, R.4    Navidi, W.5    Arnheim, N.6
  • 8
    • 0029112932 scopus 로고
    • Whole genome amplification of single cells: Mathematical analysis of PEP and tagged PCR
    • Sun F, Arnheim N, Waterman MS. Whole genome amplification of single cells: mathematical analysis of PEP and tagged PCR. Nucl Acids Res 1995; 23:3034-3040.
    • (1995) Nucl Acids Res , vol.23 , pp. 3034-3040
    • Sun, F.1    Arnheim, N.2    Waterman, M.S.3
  • 9
    • 9244263625 scopus 로고    scopus 로고
    • The use of whole genome amplification in the study of human disease
    • Hughes S, Arneson N, Done S, Squire J. The use of whole genome amplification in the study of human disease. Prog Biophys Mol Biol 2005; 88:173-189.
    • (2005) Prog Biophys Mol Biol , vol.88 , pp. 173-189
    • Hughes, S.1    Arneson, N.2    Done, S.3    Squire, J.4
  • 12
    • 0034651047 scopus 로고    scopus 로고
    • Interspersed Repetitive Sequence (IRS)-PCR for typing of whole genome radiation hybrid panels
    • Himmelbauer H, Leonard C, Lehrach H. Interspersed Repetitive Sequence (IRS)-PCR for typing of whole genome radiation hybrid panels. Nucl Acids Res 2000; 28:e7.
    • (2000) Nucl Acids Res , vol.28
    • Himmelbauer, H.1    Leonard, C.2    Lehrach, H.3
  • 13
    • 0027298218 scopus 로고
    • PCR amplification of megabase DNA with tagged random primers (T-PCR)
    • Grothues D, Cantor CR, Smith CL. PCR amplification of megabase DNA with tagged random primers (T-PCR). Nucl Acids Res 1993; 21:1321-1322.
    • (1993) Nucl Acids Res , vol.21 , pp. 1321-1322
    • Grothues, D.1    Cantor, C.R.2    Smith, C.L.3
  • 14
    • 0026736251 scopus 로고
    • Degenerate oligonuleotide-primed PCR: General amplification of target DNA by a single degenerate primer
    • Telenius H, Cartner NP, Bebb CE, Sordenskjold M, Ponder BA, Tunnacliffe A. Degenerate oligonuleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 1992; 13:718-725.
    • (1992) Genomics , vol.13 , pp. 718-725
    • Telenius, H.1    Cartner, N.P.2    Bebb, C.E.3    Sordenskjold, M.4    Ponder, B.A.5    Tunnacliffe, A.6
  • 16
    • 0037081126 scopus 로고    scopus 로고
    • A whole genome amplification method to generate long fragments from low quantities of genomic DNA
    • Kittler R, Stoneking M, Kayser M. A whole genome amplification method to generate long fragments from low quantities of genomic DNA. Anal Biochem 2002; 300:237-244.
    • (2002) Anal Biochem , vol.300 , pp. 237-244
    • Kittler, R.1    Stoneking, M.2    Kayser, M.3
  • 17
    • 44949109477 scopus 로고    scopus 로고
    • Whole-genome amplification by Single-cell COMParative genomic hybridization PCR (SCOMP)
    • Arneson N, Hughes S, Houlston R, Done S. Whole-genome amplification by Single-cell COMParative genomic hybridization PCR (SCOMP). SH Protocols 2008; 4923.
    • (2008) SH Protocols , vol.4923
    • Arneson, N.1    Hughes, S.2    Houlston, R.3    Done, S.4
  • 18
    • 0242475336 scopus 로고    scopus 로고
    • Whole genome amplification: Abundant supplies of DNA from precious samples or clinical specimens
    • Lasken RS, Egholm M. Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens. Trends Biotechnol 2003; 21:531-535.
    • (2003) Trends Biotechnol , vol.21 , pp. 531-535
    • Lasken, R.S.1    Egholm, M.2
  • 19
    • 33846492471 scopus 로고    scopus 로고
    • Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues
    • Sarit AR, Chang QZ, Bradley PC, Ni L, Spencer KW, Wan LL, Ming ST. Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues. BMC Genom 2006; 7:e312.
    • (2006) BMC Genom , vol.7
    • Sarit, A.R.1    Chang, Q.Z.2    Bradley, P.C.3    Ni, L.4    Spencer, K.W.5    Wan, L.L.6    Ming, S.T.7
  • 20
    • 0034830935 scopus 로고    scopus 로고
    • Rapid amplification of plasmid and phage DNA using φ29 DNA polymerase and multiply-primed rolling circle amplification
    • Dean FB, Nelson JR, Giesler TL, Lasken RS. Rapid amplification of plasmid and phage DNA using φ29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res 2001; 11:1095-1099.
    • (2001) Genome Res , vol.11 , pp. 1095-1099
    • Dean, F.B.1    Nelson, J.R.2    Giesler, T.L.3    Lasken, R.S.4
  • 22
    • 0037812450 scopus 로고    scopus 로고
    • Development and validation of a T7 based linear amplification for genomic DNA
    • Liu CL, Schreiber SL. Bernstein BE Development and validation of a T7 based linear amplification for genomic DNA. BMC Genom 2003; 4:e19.
    • (2003) BMC Genom , vol.4
    • Liu, C.L.1    Schreiber, S.L.2    Bernstein, B.E.3
  • 25
    • 0024284028 scopus 로고
    • A simple salting-out procedure for extraction DNA from human nucleated cells
    • abstr
    • Miller SA, Dykes DD, Polesky HF. A simple salting-out procedure for extraction DNA from human nucleated cells. Nucl Acids Res. 1988; 16:1215 abstr.
    • (1988) Nucl Acids Res. , vol.16 , pp. 1215
    • Miller, S.A.1    Dykes, D.D.2    Polesky, H.F.3
  • 26
    • 0035369386 scopus 로고    scopus 로고
    • Rapid sexing of preimplantation bovine embryo using consecutive and multiplex polymerase chain reaction (PCR) with biopsied single blastomere
    • Park JH, Lee JH, Choi KM, Kim JY, Chung GM, Jin DI, Im KS. Rapid sexing of preimplantation bovine embryo using consecutive and multiplex polymerase chain reaction (PCR) with biopsied single blastomere. Theriogenology 2001; 55:1843-1853.
    • (2001) Theriogenology , vol.55 , pp. 1843-1853
    • Park, J.H.1    Lee, J.H.2    Choi, K.M.3    Kim, J.Y.4    Chung, G.M.5    Jin, D.I.6    Im, K.S.7
  • 29
    • 84856883699 scopus 로고    scopus 로고
    • Inventors; Wisconsin Alumni Research Foundation (Madison, WI), Assignee. June 2. U.S. Patent 5759772
    • Kirkpatrick BW, Monson RL. Inventors; Wisconsin Alumni Research Foundation (Madison, WI), Assignee. 1998 June 2. Method for determining the sex of an embryo. U.S. Patent 5759772.
    • (1998) Method for Determining the Sex of an Embryo
    • Kirkpatrick, B.W.1    Monson, R.L.2
  • 31
    • 0025127060 scopus 로고
    • Assignment of the growth hormone gene locus to 19q26-qter in cattle and to 11q25-qter in sheep by in situ hybridization
    • Hediger R, Johnson SE, Barendse W, Drinkwater RD, Moore SS, Hetzel J. Assignment of the growth hormone gene locus to 19q26-qter in cattle and to 11q25-qter in sheep by in situ hybridization. Genomics 1990; 8:171-174.
    • (1990) Genomics , vol.8 , pp. 171-174
    • Hediger, R.1    Johnson, S.E.2    Barendse, W.3    Drinkwater, R.D.4    Moore, S.S.5    Hetzel, J.6
  • 32
    • 0028691722 scopus 로고
    • Localization of GH gene to bovine chromosome 5q22-26 by in situ hybridization
    • Li X, Liu L. Localization of GH gene to bovine chromosome 5q22-26 by in situ hybridization. Yi Chuan Xue Bao 1994; 21:350-355.
    • (1994) Yi Chuan Xue Bao , vol.21 , pp. 350-355
    • Li, X.1    Liu, L.2
  • 34
    • 33745036560 scopus 로고    scopus 로고
    • Associations between the AluI polymorphism of growth hormone gene and production and reproduction traits in a Hungarian Holstein-Friesian bull dam population
    • Kovacs K, Volgyi-Csik J, Zsolnai A, Gyorkos I, Fesus L. Associations between the AluI polymorphism of growth hormone gene and production and reproduction traits in a Hungarian Holstein-Friesian bull dam population. Arch Tierz Dummerstorf 2006; 49:236-249.
    • (2006) Arch Tierz Dummerstorf , vol.49 , pp. 236-249
    • Kovacs, K.1    Volgyi-Csik, J.2    Zsolnai, A.3    Gyorkos, I.4    Fesus, L.5
  • 35
    • 53949084459 scopus 로고    scopus 로고
    • Prolactin gene polymorphism and somatic cell count in dairy cattle
    • Wojdak-Maksymiec K, Kmic M, Strzalaka J. Prolactin gene polymorphism and somatic cell count in dairy cattle. J Anim Veter Adv 2008; 7:35-40.
    • (2008) J Anim Veter Adv , vol.7 , pp. 35-40
    • Wojdak-Maksymiec, K.1    Kmic, M.2    Strzalaka, J.3
  • 36
    • 33744936536 scopus 로고    scopus 로고
    • An isothermal method for whole genome amplification of fresh and degraded DNA for comparative genomic hybridization, genotyping and mutation detection
    • Lee CIP, Leong SH, Peng AEH, Choo KW, Syn C, Lim DTH, Law HY, Kon OL. An isothermal method for whole genome amplification of fresh and degraded DNA for comparative genomic hybridization, genotyping and mutation detection. DNA Res 2006; 13:77-88.
    • (2006) DNA Res , vol.13 , pp. 77-88
    • Lee, C.I.P.1    Leong, S.H.2    Peng, A.E.H.3    Choo, K.W.4    Syn, C.5    Lim, D.T.H.6    Law, H.Y.7    Kon, O.L.8
  • 39
    • 32844464594 scopus 로고    scopus 로고
    • Ovum pick up and in vitro production in the bovine after use in several generations: A 2005 status
    • Van Wagtendonk-de Leeuw AM. Ovum pick up and in vitro production in the bovine after use in several generations: a 2005 status. Theriogenology 2006; 65:914-925.
    • (2006) Theriogenology , vol.65 , pp. 914-925
    • Van Wagtendonk-De Leeuw, A.M.1
  • 40
    • 0030089840 scopus 로고    scopus 로고
    • Adaptation of the primer extension preamplification (PEP) reaction for preimplantation diagnosis: Single blastomere analysis using short PEP protocols
    • Sermon K, Lissens W, Joris H, Van Steirteghem A, Liebaers I. Adaptation of the primer extension preamplification (PEP) reaction for preimplantation diagnosis: single blastomere analysis using short PEP protocols. Mol Human Reprod 1996; 2:209-212.
    • (1996) Mol Human Reprod , vol.2 , pp. 209-212
    • Sermon, K.1    Lissens, W.2    Joris, H.3    Van Steirteghem, A.4    Liebaers, I.5
  • 41
    • 0035181825 scopus 로고    scopus 로고
    • Progress on methods of gene detection in preimplantation embryos
    • Bredbacka P. Progress on methods of gene detection in preimplantation embryos. Theriogenology 2001; 55:23-34.
    • (2001) Theriogenology , vol.55 , pp. 23-34
    • Bredbacka, P.1
  • 44
    • 67849090879 scopus 로고    scopus 로고
    • Association of prolactin gene variants with milk production traits in Russian Red Pied cattle
    • Alipanah M, Kalashnikova L, Rodionov G. Association of prolactin gene variants with milk production traits in Russian Red Pied cattle. Iran J Biotechnol 2007; 5:158-161.
    • (2007) Iran J Biotechnol , vol.5 , pp. 158-161
    • Alipanah, M.1    Kalashnikova, L.2    Rodionov, G.3
  • 45
    • 0038148733 scopus 로고    scopus 로고
    • Detailed investigation of factors influencing amplifcation effciency and allele drop-out in single cell PCR: Implications for preimplantation genetic diagnosis
    • Piyamongkol W, Bermuudez MG, Harper JC, Wells D. Detailed investigation of factors influencing amplifcation effciency and allele drop-out in single cell PCR: implications for preimplantation genetic diagnosis. Mol Human Repro 2003; 9:411-420.
    • (2003) Mol Human Repro , vol.9 , pp. 411-420
    • Piyamongkol, W.1    Bermuudez, M.G.2    Harper, J.C.3    Wells, D.4
  • 47
    • 5044247324 scopus 로고    scopus 로고
    • Isothermal whole genome amplification from single and small numbers of cells: A new era for preimplantation genetic diagnosis of inherited disease
    • Handyside AH, Robinson MD, Simpson RJ, Omar MB, Shaw MA, Grudzinskas JG, Rutherford A. Isothermal whole genome amplification from single and small numbers of cells: a new era for preimplantation genetic diagnosis of inherited disease. Mol Hum Reprod 2004; 10:767-772.
    • (2004) Mol Hum Reprod , vol.10 , pp. 767-772
    • Handyside, A.H.1    Robinson, M.D.2    Simpson, R.J.3    Omar, M.B.4    Shaw, M.A.5    Grudzinskas, J.G.6    Rutherford, A.7
  • 49
    • 0642273268 scopus 로고    scopus 로고
    • Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA
    • Lovmar L, Fredriksson M, Liljedahl U, Sigurdsson S, Syvanen AC. Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA. Nucl Acids Res 2003; 31:e129.
    • (2003) Nucl Acids Res , vol.31
    • Lovmar, L.1    Fredriksson, M.2    Liljedahl, U.3    Sigurdsson, S.4    Syvanen, A.C.5
  • 50
    • 26844442640 scopus 로고    scopus 로고
    • Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance
    • Bergen AW, Qi Y, Haque KA, Welch RA, Chanock SJ. Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance. BMC Biotechnol 2005; 5:e24.
    • (2005) BMC Biotechnol , vol.5
    • Bergen, A.W.1    Qi, Y.2    Haque, K.A.3    Welch, R.A.4    Chanock, S.J.5
  • 52
    • 33745935434 scopus 로고    scopus 로고
    • Proof of principle and first cases using preimplantation genetic haplotyping-a paradigm shift for embryo diagnosis
    • Renwick PJ, Trussler J, Ostad-Saffari E. Proof of principle and first cases using preimplantation genetic haplotyping-a paradigm shift for embryo diagnosis. Reprod Biomed Online 2006; 13:110-119.
    • (2006) Reprod Biomed Online , vol.13 , pp. 110-119
    • Renwick, P.J.1    Trussler, J.2    Ostad-Saffari, E.3
  • 53
    • 34247170804 scopus 로고    scopus 로고
    • Whole genome amplification from a single cell: A new era for preimplantation genetic diagnosis
    • Coskun S, Alsmadi O. Whole genome amplification from a single cell: a new era for preimplantation genetic diagnosis. Prenat Diagn 2007; 27:297-302.
    • (2007) Prenat Diagn , vol.27 , pp. 297-302
    • Coskun, S.1    Alsmadi, O.2
  • 54
    • 84856929463 scopus 로고    scopus 로고
    • Whole Genome Amplification (WGA) and Short Tandem Repeat Analysis (STR) of single blastomeres for embryo fingerprinting and embryo genomics
    • Denis D, Kagan D, De Matos DG, Miller K, Scott R, Palmer S. Whole Genome Amplification (WGA) and Short Tandem Repeat Analysis (STR) of single blastomeres for embryo fingerprinting and embryo genomics. Fertil Steril 2005; 84(Suppl. 1):S338.
    • (2005) Fertil Steril , vol.84 , Issue.SUPPL.1
    • Denis, D.1    Kagan, D.2    De Matos, D.G.3    Miller, K.4    Scott, R.5    Palmer, S.6
  • 55
    • 14944380100 scopus 로고    scopus 로고
    • Genome-wide single-nucleotide polymorphism arrays demonstrate high fidelity of multiple displacementbased whole-genome amplification
    • Tzvetkov MV, Becker C, Kulle B, Nurnberg P, Brockmoller J, Wojnowski L. Genome-wide single-nucleotide polymorphism arrays demonstrate high fidelity of multiple displacementbased whole-genome amplification. Electrophoresis 2005; 26:710-715.
    • (2005) Electrophoresis , vol.26 , pp. 710-715
    • Tzvetkov, M.V.1    Becker, C.2    Kulle, B.3    Nurnberg, P.4    Brockmoller, J.5    Wojnowski, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.