메뉴 건너뛰기




Volumn 5, Issue , 2005, Pages

Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; DNA; GENES; MOLECULES;

EID: 26844442640     PISSN: 14726750     EISSN: 14726750     Source Type: Journal    
DOI: 10.1186/1472-6750-5-24     Document Type: Article
Times cited : (64)

References (30)
  • 1
    • 0037432755 scopus 로고    scopus 로고
    • The Human Genome Project: Lessons from large-scale biology
    • Collins FS, Morgan M, Patrinos A: The Human Genome Project: lessons from large-scale biology. Science 2003, 300: 286-290.
    • (2003) Science , vol.300 , pp. 286-290
    • Collins, F.S.1    Morgan, M.2    Patrinos, A.3
  • 2
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch N, Merikangas K: The future of genetic studies of complex human diseases. Science 1996, 273: 1516-1517.
    • (1996) Science , vol.273 , pp. 1516-1517
    • Risch, N.1    Merikangas, K.2
  • 3
    • 2642583283 scopus 로고    scopus 로고
    • Mapping complex disease loci in whole-genome association studies
    • Carlson CS, Eberle MA, Kruglyak L, Nickerson DA: Mapping complex disease loci in whole-genome association studies. Nature 2004, 429: 446-452.
    • (2004) Nature , vol.429 , pp. 446-452
    • Carlson, C.S.1    Eberle, M.A.2    Kruglyak, L.3    Nickerson, D.A.4
  • 4
    • 12144286180 scopus 로고    scopus 로고
    • Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array
    • Matsuzaki H, Loi H, Dong S, Tsai YY, Fang J, Law J et al.: Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array. Genome Res 2004, 14: 414-425.
    • (2004) Genome Res. , vol.14 , pp. 414-425
    • Matsuzaki, H.1    Loi, H.2    Dong, S.3    Tsai, Y.Y.4    Fang, J.5    Law, J.6
  • 5
    • 0026736251 scopus 로고
    • Degenerate oligonucleotide-primed PCR: General amplification of target DNA by a single degenerate primer
    • Telenius H, Carter NP, Bebb CE, Nordenskjold M, Ponder BA, Tunnacliffe A: Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 1992, 13: 718-725.
    • (1992) Genomics , vol.13 , pp. 718-725
    • Telenius, H.1    Carter, N.P.2    Bebb, C.E.3    Nordenskjold, M.4    Ponder, B.A.5    Tunnacliffe, A.6
  • 6
    • 0042334597 scopus 로고    scopus 로고
    • Evaluation of a whole-genome amplification method based on adaptor-ligation PCR of randomly sheared genomic DNA
    • Tanabe C, Aoyagi K, Sakiyama T, Kohno T, Yanagitani N, Akimoto S et al.: Evaluation of a whole-genome amplification method based on adaptor-ligation PCR of randomly sheared genomic DNA. Genes Chromosomes Cancer 2003, 38: 168-176.
    • (2003) Genes Chromosomes Cancer , vol.38 , pp. 168-176
    • Tanabe, C.1    Aoyagi, K.2    Sakiyama, T.3    Kohno, T.4    Yanagitani, N.5    Akimoto, S.6
  • 7
    • 0024335104 scopus 로고
    • Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication
    • Blanco L, Bernad A, Lazaro JM, Martin G, Garmendia C, Salas M: Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication. J Biol Chem 1989, 264: 8935-8940.
    • (1989) J. Biol. Chem. , vol.264 , pp. 8935-8940
    • Blanco, L.1    Bernad, A.2    Lazaro, J.M.3    Martin, G.4    Garmendia, C.5    Salas, M.6
  • 9
    • 0642273268 scopus 로고    scopus 로고
    • Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA
    • Lovmar L, Fredriksson M, Liljedahl U, Sigurdsson S, Syvanen AC: Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA. Nucleic Acids Res 2003, 31: e129.
    • (2003) Nucleic Acids Res. , vol.31
    • Lovmar, L.1    Fredriksson, M.2    Liljedahl, U.3    Sigurdsson, S.4    Syvanen, A.C.5
  • 10
    • 0242475336 scopus 로고    scopus 로고
    • Whole genome amplification: Abundant supplies of DNA from precious samples or clinical specimens
    • Lasken RS, Egholm M: Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens. Trends Biotechnol 2003, 21: 531-535.
    • (2003) Trends Biotechnol. , vol.21 , pp. 531-535
    • Lasken, R.S.1    Egholm, M.2
  • 11
    • 1542469775 scopus 로고    scopus 로고
    • Whole genome amplification of DNA from laser capture-microdissected tissue for high-throughput single nucleotide polymorphism and short tandem repeat genotyping
    • Rook MS, Delach SM, Deyneko G, Worlock A, Wolfe JL: Whole genome amplification of DNA from laser capture-microdissected tissue for high-throughput single nucleotide polymorphism and short tandem repeat genotyping. Am J Pathol 2004, 164: 23-33.
    • (2004) Am. J. Pathol. , vol.164 , pp. 23-33
    • Rook, M.S.1    Delach, S.M.2    Deyneko, G.3    Worlock, A.4    Wolfe, J.L.5
  • 12
    • 5044247324 scopus 로고    scopus 로고
    • Isothermal whole genome amplification from single and small numbers of cells: A new era for preimplantation genetic diagnosis of inherited disease
    • Handyside AH, Robinson MD, Simpson RJ, Omar MB, Shaw MA, Grudzinskas JG et al.: Isothermal whole genome amplification from single and small numbers of cells: a new era for preimplantation genetic diagnosis of inherited disease. Mol Hum Reprod 2004, 10: 767-772.
    • (2004) Mol. Hum. Reprod. , vol.10 , pp. 767-772
    • Handyside, A.H.1    Robinson, M.D.2    Simpson, R.J.3    Omar, M.B.4    Shaw, M.A.5    Grudzinskas, J.G.6
  • 13
    • 0035582255 scopus 로고    scopus 로고
    • A comparison of the characteristics of profiles produced with the AMPFlSTR SGM Plus multiplex system for both standard and low copy number (LCN) STR DNA analysis
    • Whitaker JP, Cotton EA, Gill P: A comparison of the characteristics of profiles produced with the AMPFlSTR SGM Plus multiplex system for both standard and low copy number (LCN) STR DNA analysis. Forensic Sci Int 2001, 123: 215-223.
    • (2001) Forensic Sci. Int. , vol.123 , pp. 215-223
    • Whitaker, J.P.1    Cotton, E.A.2    Gill, P.3
  • 14
    • 0036157589 scopus 로고    scopus 로고
    • Detection and integration of genotyping errors in statistical genetics
    • Sobel E, Papp JC, Lange K: Detection and integration of genotyping errors in statistical genetics. Am J Hum Genet 2002, 70: 496-508.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 496-508
    • Sobel, E.1    Papp, J.C.2    Lange, K.3
  • 16
    • 24344436666 scopus 로고    scopus 로고
    • Comparison of yield and genotyping performance of multiple displacement amplification and OmniPlextrade mark whole genome amplified DNA generated from multiple DNA sources
    • Bergen AW, Haque KA, Qi Y, Beerman MB, Garcia-Closas M, Rothman N et al.: Comparison of yield and genotyping performance of multiple displacement amplification and OmniPlextrade mark whole genome amplified DNA generated from multiple DNA sources. Hum Mutat 2005, 26: 262-270.
    • (2005) Hum. Mutat. , vol.26 , pp. 262-270
    • Bergen, A.W.1    Haque, K.A.2    Qi, Y.3    Beerman, M.B.4    Garcia-Closas, M.5    Rothman, N.6
  • 17
    • 0036020666 scopus 로고    scopus 로고
    • Rubicon Genomics, Inc
    • Langmore JP: Rubicon Genomics, Inc. Pharmacogenomics 2002, 3: 557-560.
    • (2002) Pharmacogenomics , vol.3 , pp. 557-560
    • Langmore, J.P.1
  • 18
    • 8744249226 scopus 로고    scopus 로고
    • DNA amplification method tolerant to sample degradation
    • Wang G, Maher E, Brennan C, Chin L, Leo C, Kaur M et al.: DNA amplification method tolerant to sample degradation. Genome Res 2004, 14: 2357-2366.
    • (2004) Genome Res. , vol.14 , pp. 2357-2366
    • Wang, G.1    Maher, E.2    Brennan, C.3    Chin, L.4    Leo, C.5    Kaur, M.6
  • 19
    • 26844579885 scopus 로고
    • Performance of whole genome amplified samples for microsatellite genotyping
    • American Society of Human Genetics Annual Meeting, Abstract
    • Bark C, Pettengill J, Tsai YBP, Golembieski J, Gearhart J, Stewart L et al.: Performance of whole genome amplified samples for microsatellite genotyping. American Society of Human Genetics Annual Meeting, Abstract 1957.
    • (1957)
    • Bark, C.1    Pettengill, J.2    Tsai, Y.B.P.3    Golembieski, J.4    Gearhart, J.5    Stewart, L.6
  • 22
    • 0033865806 scopus 로고    scopus 로고
    • A system for specific, high-throughput genotyping by allele-specific primer extension on microarrays
    • Pastinen T, Raitio M, Lindroos K, Tainola P, Peltonen L, Syvanen AC: A system for specific, high-throughput genotyping by allele-specific primer extension on microarrays. Genome Res 2000, 10: 1031-1042.
    • (2000) Genome Res. , vol.10 , pp. 1031-1042
    • Pastinen, T.1    Raitio, M.2    Lindroos, K.3    Tainola, P.4    Peltonen, L.5    Syvanen, A.C.6
  • 24
    • 10244219858 scopus 로고    scopus 로고
    • Accessing genetic information with high-density DNA arrays
    • Chee M, Yang R, Hubbell E, Berno A, Huang XC, Stern D et al.: Accessing genetic information with high-density DNA arrays. Science 1996, 274: 610-614.
    • (1996) Science , vol.274 , pp. 610-614
    • Chee, M.1    Yang, R.2    Hubbell, E.3    Berno, A.4    Huang, X.C.5    Stern, D.6
  • 25
    • 2442707739 scopus 로고    scopus 로고
    • Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel
    • Barker DL, Hansen MS, Faruqi AF, Giannola D, Irsula OR, Lasken RS et al.: Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel. Genome Res 2004, 14: 901-907.
    • (2004) Genome Res. , vol.14 , pp. 901-907
    • Barker, D.L.1    Hansen, M.S.2    Faruqi, A.F.3    Giannola, D.4    Irsula, O.R.5    Lasken, R.S.6
  • 26
    • 2442646694 scopus 로고    scopus 로고
    • Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification
    • Paez JG, Lin M, Beroukhim R, Lee JC, Zhao X, Richter DJ et al.: Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification. Nucleic Acids Res 2004, 32: e71.
    • (2004) Nucleic Acids Res. , vol.32
    • Paez, J.G.1    Lin, M.2    Beroukhim, R.3    Lee, J.C.4    Zhao, X.5    Richter, D.J.6
  • 27
    • 0041360026 scopus 로고    scopus 로고
    • Multiple displacement amplification prior to single nucleotide polymorphism genotyping in epidemiologic studies
    • Tranah GJ, Lescault PJ, Hunter DJ, De Vivo I: Multiple displacement amplification prior to single nucleotide polymorphism genotyping in epidemiologic studies. Biotechnol Lett 2003, 25: 1031-1036.
    • (2003) Biotechnol. Lett. , vol.25 , pp. 1031-1036
    • Tranah, G.J.1    Lescault, P.J.2    Hunter, D.J.3    De Vivo, I.4
  • 28
    • 19944432329 scopus 로고    scopus 로고
    • Investigating the utility of combining phi29 whole genome amplification and highly multiplexed single nucleotide polymorphism BeadArray genotyping
    • Pask R, Rance HE, Barratt BJ, Nutland S, Smyth DJ, Sebastian M et al.: Investigating the utility of combining phi29 whole genome amplification and highly multiplexed single nucleotide polymorphism BeadArray genotyping. BMC Biotechnol 2004, 4: 15.
    • (2004) BMC Biotechnol. , vol.4 , pp. 15
    • Pask, R.1    Rance, H.E.2    Barratt, B.J.3    Nutland, S.4    Smyth, D.J.5    Sebastian, M.6
  • 29
    • 9144266311 scopus 로고    scopus 로고
    • SNP500Cancer: A public resource for sequence validation and assay development for genetic variation in candidate genes
    • Database issue
    • Packer BR, Yeager M, Staats B, Welch R, Crenshaw A, Kiley M et al.: SNP500Cancer: a public resource for sequence validation and assay development for genetic variation in candidate genes. Nucleic Acids Res 2004, 32 Database issue: D528-D532.
    • (2004) Nucleic Acids Res. , vol.32
    • Packer, B.R.1    Yeager, M.2    Staats, B.3    Welch, R.4    Crenshaw, A.5    Kiley, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.