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Volumn 63, Issue 2, 2012, Pages 446-459

Differentiated Response of Denitrifying Communities to Fertilization Regime in Paddy Soil

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; FERTILIZER; NITRITE REDUCTASE;

EID: 84856702734     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9909-5     Document Type: Article
Times cited : (121)

References (48)
  • 1
    • 0025199418 scopus 로고
    • Relative contributions of greenhouse gas emissions to global warming
    • Lashof DA, Ahuja DR (1990) Relative contributions of greenhouse gas emissions to global warming. Nature 344: 529-531.
    • (1990) Nature , vol.344 , pp. 529-531
    • Lashof, D.A.1    Ahuja, D.R.2
  • 3
    • 2142761510 scopus 로고    scopus 로고
    • Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments
    • Wolsing M, Prieme A (2004) Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments. FEMS Microbiol Ecol 48: 261-271.
    • (2004) FEMS Microbiol Ecol , vol.48 , pp. 261-271
    • Wolsing, M.1    Prieme, A.2
  • 4
    • 0842330605 scopus 로고    scopus 로고
    • Methan and nitrogen oxide fluxes in tropical agricultural soils: sources, sinks and mechanisms
    • Mosier A, Wassmann R, Verchot L, King J, Palm C (2004) Methan and nitrogen oxide fluxes in tropical agricultural soils: sources, sinks and mechanisms. Environ Dev Sustain 6: 11-49.
    • (2004) Environ Dev Sustain , vol.6 , pp. 11-49
    • Mosier, A.1    Wassmann, R.2    Verchot, L.3    King, J.4    Palm, C.5
  • 5
    • 77957744758 scopus 로고    scopus 로고
    • The evolution and future of earth's nitrogen cycle
    • Canfield DE, Glazer AN, Falkowski PG (2010) The evolution and future of earth's nitrogen cycle. Science 330: 192-196.
    • (2010) Science , vol.330 , pp. 192-196
    • Canfield, D.E.1    Glazer, A.N.2    Falkowski, P.G.3
  • 7
    • 0028163493 scopus 로고
    • Denitrification in the top-soil of managed grasslands in The Netherlands in relation to soil type and fertilizer level
    • Deklein CAM, Vanlogtestijn RSP (1994) Denitrification in the top-soil of managed grasslands in The Netherlands in relation to soil type and fertilizer level. Plant and Soil 163: 33-44.
    • (1994) Plant and Soil , vol.163 , pp. 33-44
    • Deklein, C.A.M.1    Vanlogtestijn, R.S.P.2
  • 8
    • 0020064009 scopus 로고
    • Denitrification
    • Knowles R (1982) Denitrification. Microbiol Rev 46: 43-70.
    • (1982) Microbiol Rev , vol.46 , pp. 43-70
    • Knowles, R.1
  • 9
    • 0027692042 scopus 로고
    • Denitrification and organic-carbon availability in 2 aquifers
    • Starr RC, Gillham RW (1993) Denitrification and organic-carbon availability in 2 aquifers. Ground Water 31: 934-947.
    • (1993) Ground Water , vol.31 , pp. 934-947
    • Starr, R.C.1    Gillham, R.W.2
  • 11
    • 0024163232 scopus 로고
    • Denitrification hysteresis during wetting and drying cycles in soil
    • Groffman PM, Tiedje JM (1988) Denitrification hysteresis during wetting and drying cycles in soil. Soil Science Society of America Journal 52: 1626-1629.
    • (1988) Soil Science Society of America Journal , vol.52 , pp. 1626-1629
    • Groffman, P.M.1    Tiedje, J.M.2
  • 12
    • 0033857831 scopus 로고    scopus 로고
    • Subsurface denitrification in a forest riparian zone: Interactions between hydrology and supplies of nitrate and organic carbon
    • Hill AR, Devito KJ, Campagnolo S, Sanmugadas K (2000) Subsurface denitrification in a forest riparian zone: Interactions between hydrology and supplies of nitrate and organic carbon. Biogeochemistry 51: 193-223.
    • (2000) Biogeochemistry , vol.51 , pp. 193-223
    • Hill, A.R.1    Devito, K.J.2    Campagnolo, S.3    Sanmugadas, K.4
  • 13
    • 33845492873 scopus 로고    scopus 로고
    • Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods
    • Wallenstein MD, Myrold DD, Firestone M, Voytek M (2006) Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods. Ecol Appl 16: 2143-2152.
    • (2006) Ecol Appl , vol.16 , pp. 2143-2152
    • Wallenstein, M.D.1    Myrold, D.D.2    Firestone, M.3    Voytek, M.4
  • 14
    • 20444448894 scopus 로고    scopus 로고
    • Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community
    • Philippot L, Hallin S (2005) Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community. Curr Opin Microbiol 8: 234-239.
    • (2005) Curr Opin Microbiol , vol.8 , pp. 234-239
    • Philippot, L.1    Hallin, S.2
  • 15
    • 67349287510 scopus 로고    scopus 로고
    • Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment
    • Hallin S, Jones CM, Schloter M, Philippot L (2009) Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment. Isme Journal 3: 597-605.
    • (2009) Isme Journal , vol.3 , pp. 597-605
    • Hallin, S.1    Jones, C.M.2    Schloter, M.3    Philippot, L.4
  • 16
    • 0033939308 scopus 로고    scopus 로고
    • The functional significance of denitrifier community composition in a terrestrial ecosystem
    • Cavigelli MA, Robertson GP (2000) The functional significance of denitrifier community composition in a terrestrial ecosystem. Ecology 81: 1402-1414.
    • (2000) Ecology , vol.81 , pp. 1402-1414
    • Cavigelli, M.A.1    Robertson, G.P.2
  • 17
    • 0033992641 scopus 로고    scopus 로고
    • Effects of oxygen concentration and moisture content of refuse on nitrification, denitrification and nitrous oxide production
    • Hwang SJ, Hanaki K (2000) Effects of oxygen concentration and moisture content of refuse on nitrification, denitrification and nitrous oxide production. Bioresour Technol 71: 159-165.
    • (2000) Bioresour Technol , vol.71 , pp. 159-165
    • Hwang, S.J.1    Hanaki, K.2
  • 18
    • 33645024488 scopus 로고    scopus 로고
    • Structure and activity of the denitrifying community in a maize-cropped field fertilized with composted pig manure or ammonium nitrate
    • Dambreville C, Hallet S, Nguyen C, Morvan T, Germon JC, Philippot L (2006) Structure and activity of the denitrifying community in a maize-cropped field fertilized with composted pig manure or ammonium nitrate. FEMS Microbiol Ecol 56: 119-131.
    • (2006) FEMS Microbiol Ecol , vol.56 , pp. 119-131
    • Dambreville, C.1    Hallet, S.2    Nguyen, C.3    Morvan, T.4    Germon, J.C.5    Philippot, L.6
  • 19
    • 4143099372 scopus 로고    scopus 로고
    • Diversity of nitrite reductase genes (nirS) in the denitrifying water column of the coastal Arabian Sea
    • Jayakumar DA, Francis CA, Naqvi SWA, Ward BB (2004) Diversity of nitrite reductase genes (nirS) in the denitrifying water column of the coastal Arabian Sea. Aquat Microb Ecol 34: 69-78.
    • (2004) Aquat Microb Ecol , vol.34 , pp. 69-78
    • Jayakumar, D.A.1    Francis, C.A.2    Naqvi, S.W.A.3    Ward, B.B.4
  • 20
    • 0347761170 scopus 로고    scopus 로고
    • Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils
    • Stres B, Mahne I, Avgustin G, Tiedje JM (2004) Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils. Appl Environ Microbiol 70: 301-309.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 301-309
    • Stres, B.1    Mahne, I.2    Avgustin, G.3    Tiedje, J.M.4
  • 21
    • 57449112525 scopus 로고    scopus 로고
    • Microbial community composition and denitrifying enzyme activities in salt marsh sediments
    • Cao YP, Green PG, Holden PA (2008) Microbial community composition and denitrifying enzyme activities in salt marsh sediments. Appl Environ Microbiol 74: 7585-7595.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 7585-7595
    • Cao, Y.P.1    Green, P.G.2    Holden, P.A.3
  • 24
    • 78149470564 scopus 로고    scopus 로고
    • Impact of long-term fertilization on the composition of denitrifier communities based on nitrite reductase analyses in a paddy soil
    • Chen Z, Luo XQ, Hu RG, Wu MN, Wu JS, Wei WX (2010) Impact of long-term fertilization on the composition of denitrifier communities based on nitrite reductase analyses in a paddy soil. Microb Ecol 60: 850-861.
    • (2010) Microb Ecol , vol.60 , pp. 850-861
    • Chen, Z.1    Luo, X.Q.2    Hu, R.G.3    Wu, M.N.4    Wu, J.S.5    Wei, W.X.6
  • 26
    • 0037978972 scopus 로고    scopus 로고
    • Nitric oxide reductase (norB) genes from pure cultures and environmental samples
    • Braker G, Tiedje JM (2003) Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Appl Environ Microbiol 69: 3476-3483.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3476-3483
    • Braker, G.1    Tiedje, J.M.2
  • 27
    • 0033760479 scopus 로고    scopus 로고
    • Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays
    • Suzuki MT, Taylor LT, DeLong EF (2000) Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays. Appl Environ Microbiol 66: 4605-4614.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4605-4614
    • Suzuki, M.T.1    Taylor, L.T.2    Delong, E.F.3
  • 29
    • 35948950775 scopus 로고    scopus 로고
    • Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifier communities in soil
    • Bremer C, Braker G, Matthies D, Reuter A, Engels C, Conrad R (2007) Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifier communities in soil. Appl Environ Microbiol 73: 6876-6884.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6876-6884
    • Bremer, C.1    Braker, G.2    Matthies, D.3    Reuter, A.4    Engels, C.5    Conrad, R.6
  • 30
    • 70349127272 scopus 로고    scopus 로고
    • Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil
    • Yoshida M, Ishii S, Otsuka S, Senoo K (2009) Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil. Soil Biology & Biochemistry 41: 2044-2051.
    • (2009) Soil Biology & Biochemistry , vol.41 , pp. 2044-2051
    • Yoshida, M.1    Ishii, S.2    Otsuka, S.3    Senoo, K.4
  • 31
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5: 150-163.
    • (2004) Briefings in Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 33
    • 0036330611 scopus 로고    scopus 로고
    • Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil
    • Roesch C, Mergel A, Bothe H (2002) Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil. Appl Environ Microbiol 68: 3818-3829.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3818-3829
    • Roesch, C.1    Mergel, A.2    Bothe, H.3
  • 34
    • 33747335398 scopus 로고    scopus 로고
    • Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils
    • Henry S, Bru D, Stres B, Hallet S, Philippot L (2006) Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils. Appl Environ Microbiol 72: 5181-5189.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5181-5189
    • Henry, S.1    Bru, D.2    Stres, B.3    Hallet, S.4    Philippot, L.5
  • 35
    • 0032080514 scopus 로고    scopus 로고
    • Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments
    • Scala DJ, Kerkhof LJ (1998) Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments. FEMS Microbiol Lett 162: 61-68.
    • (1998) FEMS Microbiol Lett , vol.162 , pp. 61-68
    • Scala, D.J.1    Kerkhof, L.J.2
  • 36
    • 58149133837 scopus 로고    scopus 로고
    • Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland
    • Ruiz-Rueda O, Hallin S, Baneras L (2009) Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland. FEMS Microbiol Ecol 67: 308-319.
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 308-319
    • Ruiz-Rueda, O.1    Hallin, S.2    Baneras, L.3
  • 38
    • 51349126848 scopus 로고    scopus 로고
    • Bacterial diversity of the Broadbalk 'classical' winter wheat experiment in relation to long-term fertilizer inputs
    • Ogilvie LA, Hirsch PR, Johnston AWB (2008) Bacterial diversity of the Broadbalk 'classical' winter wheat experiment in relation to long-term fertilizer inputs. Microb Ecol 56: 525-537.
    • (2008) Microb Ecol , vol.56 , pp. 525-537
    • Ogilvie, L.A.1    Hirsch, P.R.2    Johnston, A.W.B.3
  • 39
    • 29144506348 scopus 로고    scopus 로고
    • Influence of inorganic nitrogen management regime on the diversity of nitrite-oxidizing bacteria in agricultural grassland soils
    • Freitag TE, Chang L, Clegg CD, Prosser JI (2005) Influence of inorganic nitrogen management regime on the diversity of nitrite-oxidizing bacteria in agricultural grassland soils. Appl Environ Microbiol 71: 8323-8334.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8323-8334
    • Freitag, T.E.1    Chang, L.2    Clegg, C.D.3    Prosser, J.I.4
  • 40
    • 78149429779 scopus 로고    scopus 로고
    • Role of plant residues in determining temporal patterns of the activity, size, and structure of nitrate reducer communities in soil
    • Cheneby D, Bru D, Pascault N, Maron PA, Ranjard L, Philippot L (2010) Role of plant residues in determining temporal patterns of the activity, size, and structure of nitrate reducer communities in soil. Appl Environ Microbiol 76: 7136-7143.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 7136-7143
    • Cheneby, D.1    Bru, D.2    Pascault, N.3    Maron, P.A.4    Ranjard, L.5    Philippot, L.6
  • 42
    • 37349057092 scopus 로고    scopus 로고
    • Denitrification rate determined by nitrate disappearance is higher than determined by nitrous oxide production with acetylene blockage
    • Yu KW, Struwe S, Kjoller A, Chen GX (2008) Denitrification rate determined by nitrate disappearance is higher than determined by nitrous oxide production with acetylene blockage. Ecol Eng 32: 90-96.
    • (2008) Ecol Eng , vol.32 , pp. 90-96
    • Yu, K.W.1    Struwe, S.2    Kjoller, A.3    Chen, G.X.4
  • 44
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft WG (1997) Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61: 533-616.
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 533-616
    • Zumft, W.G.1
  • 45
    • 49749112308 scopus 로고    scopus 로고
    • Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification
    • Jones CM, Stres B, Rosenquist M, Hallin S (2008) Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification. Mol Biol Evol 25: 1955-1966.
    • (2008) Mol Biol Evol , vol.25 , pp. 1955-1966
    • Jones, C.M.1    Stres, B.2    Rosenquist, M.3    Hallin, S.4
  • 46
    • 0023406087 scopus 로고
    • Soil microsites as a source of denitrification variability
    • Parkin TB (1987) Soil microsites as a source of denitrification variability. Soil Science Society of America Journal 51: 1194-1199.
    • (1987) Soil Science Society of America Journal , vol.51 , pp. 1194-1199
    • Parkin, T.B.1
  • 47
    • 33748792525 scopus 로고    scopus 로고
    • Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland
    • Kandeler E, Deiglmayr K, Tscherko D, Bru D, Philippot L (2006) Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland. Appl Environ Microbiol 72: 5957-5962.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5957-5962
    • Kandeler, E.1    Deiglmayr, K.2    Tscherko, D.3    Bru, D.4    Philippot, L.5
  • 48
    • 77349108829 scopus 로고    scopus 로고
    • nirK-harboring denitrifiers are more responsive to denitrification-inducing conditions in rice paddy soil than nirS-harboring bacteria
    • Yoshida M, Ishii S, Otsuka S, Senoo K (2010) nirK-harboring denitrifiers are more responsive to denitrification-inducing conditions in rice paddy soil than nirS-harboring bacteria. Microbes and Environments 25: 45-48.
    • (2010) Microbes and Environments , vol.25 , pp. 45-48
    • Yoshida, M.1    Ishii, S.2    Otsuka, S.3    Senoo, K.4


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