Wholesale replacement of lima bean (Phaseolus lunatus L.) landraces over the last 30 years in northeastern Campeche, Mexico

Genetic Resources and Crop Evolution

Volumn 59, Issue 2, 2012, Pages 191-204

  Martinez Castillo J ^a   Camacho Perez L ^a   Coello Coello, J ^a   Andueza Noh, R ^a  

^a CENTRO DE INVESTIGACIÓN CIENTÍFICA DE YUCATÁN   (Mexico)

Author keywords

Bottleneck; Genetic erosion; Lima bean landraces; Microsatellite DNA markers; Phaseolus lunatus; Yucatan peninsula

Indexed keywords

ALLELE; CLUSTER ANALYSIS; CONSERVATION GENETICS; CONSERVATION PLANNING; CULTIVAR; DOMESTICATION; GENETIC RESOURCE; GENETIC VARIATION; GERMPLASM; HYPOTHESIS TESTING; LEGUME; PLANT BREEDING; POPULATION BOTTLENECK;

CAMPECHE; MEXICO [NORTH AMERICA]; YUCATAN PENINSULA;

PHASEOLUS LUNATUS;

EID: 84856690943     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-011-9675-8     Document Type: Article

References (71)

1. Adams REW, Culbert TP (1977) The origins of civilization in the Maya lowlands. In: Adams REW (ed) The origins of Maya civilization. University of New Mexico, Albuquerque, pp 3-34.
2. Almanza-Pinzón MI, Khairallah M, Fox PN, Warburton ML (2003) Comparison of molecular markers and coefficients of parentage for the analysis of genetic diversity among spring bread wheat accessions. Euphytica 130: 77-86.
3. Altieri MA, Montecinos C (1993) Conserving crop genetic resources in Latin America through farmer's participation. In: Christopher S, Potter DJ, Cohen JI (eds) Perspectives on biodiversity: case studies of genetic resource conservation and development. American Association for the Advancement of Science, Washington, pp 45-64.
4. Arias LM, Latournerie L, Montiel S, Sauri E (2007) Cambios recientes en la diversidad de maíces criollos de Yucatán, México. Universidad y Ciencia 1(23): 69-74.
5. Backes G, Hatz B, Jahoor A, Fischbeck G (2003) RFLP diversity within and between major groups of barley in Europe. Plant Breed 122: 291-299.
6. Ballesteros GA (1999) Contribuciones al conocimiento del frijol Lima (Phaseolus lunatus L.) en América Tropical. Ph. D. thesis, Colegio de Posgraduados, Montecillos, Estado de México, México.
7. Barry MB, Pham JR, Beavogui S, Ghesquiere A, Ahmadi N (2008) Diachronic (1979-2003) analysis of rice genetic diversity in Guinea did not reveal genetic erosion. Genet Resour Crop Evol 55: 723-733.
8. Bassam BJ, Anollés GC, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196: 80-83.
9. Baudoin JP, Degreef J, Hardy O, Janart F, Zoro Bi I (1998) Development of an in situ conservation strategy for wild Lima bean (Phaseolus lunatus L.) populations in the central valley of Costa Rica. In: Owens SJ, Rudall PJ (eds) Reproduction biology. Royal Botanic Garden Press, Kew, pp 417-426.
10. Baur E (1914) Die Bedeutung der primitiven Kulturrassen und der wilden Verwandten unserer Kulturpflanzen für die pflanzenzüchtung. Jahrbuch der Deutschen Landwirtschafts Gesellschaft 29: 104-110.
11. Bellon MR, Taylor JE (1993) Farmer soil taxonomy and technology adoption. Econ Dev Cult Change 41: 764-786.
12. SB (1991) A farmer-based approach to conservation crop germplasm. Econ Bot 45: 153-165.
13. Colunga-GarcíaMarín P, Zizumbo-Villarreal D (2007) Tequila and other Agave spirits from west-central Mexico. Current germplasm diversity, conservation and origin. Biodivers Conserv 16(16): 1653-1667.
14. de la Cuanalo HEC, Arias LM (1997) Cultural and economic factors that affect farmers decision-making in Yucatan, Mexico. In: Jarvis DI, Hodgkin T (eds) Strengthening the scientific basis of in situ conservation of agricultural biodiversity on-farm. Options for data collecting and analysis. IPGRI, Rome, p 14.
15. Debouck DG (1979) Proyecto de recolección de germoplasma de Phaseolus en México. CIAT-INIA, Centro Internacional de Agricultura Tropical (CIAT), Colombia.
16. Donini P, Law LR, Koebner RMD, Reeves JC, Cooke RJ (2000) Temporal trends in the diversity of UK wheat. Theor Appl Genet 100: 912-917.
17. Doyle J, Doyle J (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
18. Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distance among DNA haplotypes: applications to human mitochondrial DNA restriction data. Genetics 131: 479-491.
19. FAO (1996) 'The State of the World's Plant Genetic Resources: Diversity and Erosion'. Third World Resurgence. Farmers' Rights and the Battle for Agrobiodiversity. Issue No. 72/73 KDN PP6738/1/96. An excerpt from the Report on the State of the World's Plant Genetic Resources prepared by the FAO Secretariat for the International Technical Conference on Plant Genetic Resources at Leipzig, Germany, 17-23 June 1996.
20. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
21. Frankel OH, Bennett E (1970) Genetic resources in plants-their exploration and conservation. IBP Handbook No. 11. Blackwell Scientific Publications, Oxford.
22. Gaitán-Solís E, Duque MC, Edwards KJ, Tohme J (2002) Microsatellite repeats in common bean (Phaseolus vulgaris): isolation, characterization, and cross-species amplification in Phaseolus ssp. Crop Sci 42: 2128-2136.
23. Gao L (2003) The conservation of Chinese rice biodiversity: genetic erosion, ethnobotany and prospects. Genetic Resour Crop Evol 50: 17-32.
24. Gómez-Campo C (2006) Erosion of genetic resources within seed banks: the role of seed containers. Seed Sci Res 16: 291-294.
25. Guerrant EO (1992) Genetic and demographic considerations in the sampling and reintroduction of rare plants. In: Fiedler PL, Jain SK (eds) Conservation biology: the theory and practice of nature conservation, preservation, and management. Routledge, Champan and Hall, Inc., New York (NY), pp 321-344.
26. Gutiérrez-Salgado A, Gepts P, Debouck DG (1995) Evidence for two gene pools of the Lima beans (Phaseolus lunatus L.) in the Americas. Genet Resour Crop Evol 42: 15-28.
27. Hammer K, Laghetti G (2005) Genetic erosion-examples from Italy. Genet Resour Crop Evol 52: 629-634.
28. Harlan JR (1965) The possible role of weedy races in the evolution of cultivated plants. Euphytica 14: 173-176.
29. Harlan JR, de Wit JMJ (1971) Toward a rational classification of cultivated plants. Taxon 20: 509-517.
30. Haugen JM (2001) Whatever the will the weather: a study of seed systems in Honduras, and their importante for food security ans argobiodiversity in the aftermaths of hurricane Micth. Thesis Agric. Degree, Agricultural University of Norway.
31. Hernández FC, Delgado A (1992) Recursos genéticos de frijoles en el oriente de Yucatán. In: Zizumbo D, Rasmussen C, Arias LM, Terán S (eds) La modernización de la milpa en Yucatán: utopía o realidad. CICY-DANIDA, Mérida, pp 147-160.
32. Hernández-Xolocotzi E (1992) Racionalidad tecnológica del sistema de producción agíi{dotless}cola de roza-tumba-quema en Yucatán. In: Zizumbo-Villarreal D, Ramussen C, Arias-Reyes LM, Terán S (eds) La modernización de la milpa en Yucatán: utopía o realidad. CICY-DANIDA, Mérida, pp 187-194.
33. Jarvis DI, Hodgkin T (1999) Wild relatives and crop cultivars: detecting natural introgression and farmer selection of new genetic combinations in agroecosystems. Mol Ecol 8: S159-S173.
34. Jarvis DI, Myer L, Klemick H, Guarino H, Smale M, Brown AHD (2000) A training guide for in situ conservation on-farm. Version 1. International Plant Genetic Resources Institute, Rome.
35. Khlestkina EK, Huang XQ, Quenum FJB, Chebotar S, Röder MS, Börner A (2004) Genetic diversity in cultivated plants-loss or stability? Theor Appl Genet 108: 1466-1472.
36. Koebner RMD, Donini P, Reeves JC (2003) Temporal flux in the morphological and molecular diversity of UK barley. Theor Appl Genet 106: 550-558.
37. Ku-Naal R (1995) Cambios técnicos en la milpa bajo roza-tumba-quema en Yaxcabá, Yucatán. In: Hernández XE, Bello BE, Levy TS (eds) La milpa en Yucatán: Un sistema de producción agrícola tradicional. Colegio de Postgraduados, México, pp 401-418.
38. Le Clerc V, Bazante F, Baril C, Guiard J, Zhang D (2005) Assessing temporal change in genetic diversity of maize varieties using microsatellite markers. Theor Appl Genet 110: 294-302.
39. Lu H, Bernardo R (2001) Molecular marker diversity among current and historical maize inbreds. Theor Appl Genet 103: 613-617.
40. Luikart G, Cornuet JM (1997) Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv Biol 12: 228-237.
41. Luikart GL, Allendrof FW, Cornuet JM, Sherwin WB (1998) Distortion of allele frequency distributions provides a test for recent population bottlenecks. J Hered 89: 238-247.
42. Maccaferi M, Sanguinetti MC, Donini P, Tuberosa R (2003) Microsatellite analysis reveals a progressive widening of the genetic basis in the elite durum wheat germplasm. Theor Appl Genet 107: 783-797.
43. Mantegazza R, Biloni M, Grassi F, Basso B, Lu BR, Cai XX, Sala F, Spada A (2008) Temporal trends of variation in Italian rice germplasm over the past two centuries revealed by AFLP and SSR markers. Crop Sci 48: 1832-1840.
44. Maras M, Susnik S, Sustar-Vozlic J, Meglic V (2006) Temporal changes in genetic diversity of common bean (Phaseolus vulgaris L.) accessions cultivated between 1800 and 2000. Russ J Genet 42(7): 775-782.
45. Martínez-Castillo J, Zizumbo-Villarreal D, Perales-Rivera H, Colunga-GarcíaMarín P (2004) Intraspecific diversity and morpho-phenological variation in Phaseolus lunatus L. from the Yucatan Peninsula, México. Econ Bot 58(3): 354-380.
46. Martínez-Castillo J, Zizumbo-Villarreal D, Gepts P, Delgado-Valerio P, Colunga-GarcíaMarín P (2006) Structure and genetic diversity of wild populations of Lima Bean (Phaseolus lunatus L.) from the Yucatan Peninsula, Mexico. Crop Sci 46: 1071-1080.
47. Martínez-Castillo J, Zizumbo-Villarreal D, Gepts P, Colunga-GarcíaMarín P (2007) Gene flow and genetic structure in the wild-weedy-domesticated complex of Lima bean (Phaseolus lunatus L.) in its Mesoamerican center of domestication and diversity. Crop Sci 47: 58-66.
48. Martínez-Castillo J, Colunga-GarcíaMarín P, Zizumbo-Villarreal D (2008) Genetic erosion and in situ conservation of Lima bean (Phaseolus lunatus L.) landraces in its Mesoamerican diversity center. Genet Resour Crop Evol 55: 1065-1077.
49. Miller MP (1997) Tools for population genetic analysis (TFPGA) 1. 3: a windows program for the analysis of allozyme and molecular population genetic data. Distributed by the author.
50. Motta-Aldana JR, Serrano-Serrano M, Hernandez-Torres J, Castillo-Villamizar G, Debuck DG, Chacon MI (2010) Multiple origins of lima bean landraces in the Americas: evidence from chloroplast and nuclear DNA polymorphisms. Crop Sci 50(5): 1773.
51. Nei M (1972) Genetic distance between populations. Am Nat 106(949): 283-292.
52. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
53. Parzies HK, Spoor W, Ennos RA (2000) Genetic diversity of barley landraces accessions (Hordeum vulgaris ssp. vulgare) conserved for different lengths of time in ex situ gene banks. Heredity 84: 476-486.
54. Petersen L, Ostergard H, Giese H (1994) Genetic diversity among wild and cultivated barley as revealed by RFLP. Theor Appl Genet 89: 676-681.
55. Quirós CF, Ortega R, van Raamsdonk LWD (1992) Amplification of potato genetic resources in their center of diversity: the role of natural outcrossing and selection by the Andean farmer. Genet Resour Crop Evol 39: 107-113.
56. Reyes GD, Aguilar G (1992) Intensificación de la milpa en Yucatá. In: Zizumbo-Villarreal D, Ramussen C, Arias-Reyes LM, Terán S (eds) La modernización de la milpa en Yucatán: utopía o realidad. CICY-DANIDA, Mérida, México, pp 347-358.
57. Roussel V, Koenig J, Beckert M, Balfourier F (2004) Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes. Theor Appl Genet 108: 920-930.
58. Schneider S, Roessli D, Excoffier L (2000) Arlequin ver. 2. 000: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
59. Serrano-Serrano ML, Hernández-Torres J, Castillo-Villamizar G, Debouck DG, Chacón MI (2010) Gene pools in wild lima bean (Phaseolus lunatus L.) from the Americas: evidences for an Andean origin and past migrations. Mol Phylogenet Evol 54: 76-87.
60. Sherwin WB, Moritz C (2000) Managing and monitoring genetic erosion. In: Young AG, Clarke GM (eds) Genetics, demography and viability of fragment populations, vol 4. Cambridge Univ Press, Cambridge, pp 9-34.
61. Slatkin M (1987) Gene flow and the geographic structure of natural populations. Science 236: 787-792.
62. Stebbins GL (1959) The role of hybridization in evolution. Proc Am Phil Soc 103: 231-251.
63. Struss D, Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theor Appl Genet 97: 308-315.
64. Tsegaye B, Berg T (2006) Genetic erosion of Ethiopian tetra-ploid wheat landraces in Eastern Shewa, Central Ethiopia. Genet Resour Crop Evol 54(4): 715-726.
65. Upadhyay MP, Sthapit BR (1998) Plant genetic resource conservation programs in Nepal: some proposals for scientific basis of in situ conservation of agrobiodiversity. In: Paper presented on the strengthening the scientific basis of in situ conservation of crop gene pools, from 17-19 July in Rome, Italy, IPGRI.
66. van de Wouw M, Kik C, van Hintum T, van Treuren R, Visser B (2010) Genetic erosion in crops: concept, research results and challenges. Plant Genet Resour 8: 1-15.
67. Vargas-Ponce O, Zizumbo-Villarreal D, Colunga-GarcíaMarín P (2007) In situ diversity and maintenance of traditional Agave landraces used in spirits production in west-central, Mexico. Econ Bot 61(4): 362-375.
68. Wright S (1978) Evolution and the genetics of populations, vol IV. Variability within and among natural populations. University of Chicago Press, Chicago.
69. Xiu-Qiang H, Wolf M, Ganal MW, Orford S, Koebner RMD, Röder MS (2007) Did modern plant breeding lead to genetic erosion in European winter wheat varieties? Crop Sci 47: 343-349.
70. Yeh FC, Boyle TJB (1999) Popgene version 1. 31. Microsoft Windows-based freeware for population analysis. University of Alberta and Centre for International Forestry Research, Edmonton.
71. Zizumbo-Villarreal D (1992) Conclusiones Mesa Redonda La modernización de la milpa en Yucatán: utopía o realidad. In: Zizumbo-Villareal D, Ramussen C, Arias-Reyes LM, Terán S (eds) La modernización de la milpa en Yucatán: utopía o realidad. CICY-DANIDA, Mérida, Yucatán, México, pp 371-378.