Molecular and phenotypic characterization of strains nodulating Anthyllis vulneraria in mine tailings, and proposal of Aminobacter anthyllidis sp. nov., the first definition of Aminobacter as legume-nodulating bacteria

Systematic and Applied Microbiology

Volumn 35, Issue 2, 2012, Pages 65-72

  Maynaud, Géraldine ^a   Willems, Anne ^b   Soussou, Souhir ^c   Vidal, Céline ^a   Mauré, Lucette ^a   Moulin, Lionel ^d   Cleyet Marel, Jean Claude ^a   Brunel, Brigitte ^c  

^a LABORATOIRE DES SYMBIOSES TROPICALES ET MÉDITERRANÉENNES   (France)

^b GHENT UNIVERSITY   (Belgium)

^c MONTPELLIER SUPAGRO   (France)

^d INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

Author keywords

Heavy metal tolerance; Mesorhizobium; Multilocus sequence analysis; N 2 fixation; NodA gene

Indexed keywords

CIPROFLOXACIN; GENOMIC DNA; KANAMYCIN; LEAD; NALIDIXIC ACID; NEOMYCIN; PENICILLIN G; RNA 16S; STREPTOMYCIN; VANCOMYCIN; ZINC;

ACIDIFICATION; AMINOBACTER; AMINOBACTER ANTHYLLIDIS; ANTHYLLIS VULNERARIA; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOCHEMISTRY; DNA DNA HYBRIDIZATION; DNA EXTRACTION; GENE DOSAGE; HOUSEKEEPING GENE; LEGUME; MESORHIZOBIUM; MINE TAILINGS; MOLECULAR GENETICS; MULTILOCUS SEQUENCE TYPING; NODULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PLANT SEED; PRIORITY JOURNAL; SPECIES IDENTIFICATION; SYMBIONT;

ACYLTRANSFERASES; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BASE SEQUENCE; DNA, BACTERIAL; DNA, RIBOSOMAL; FABACEAE; LEAD; MINING; MOLECULAR SEQUENCE DATA; PHYLLOBACTERIACEAE; PHYLOGENY; REC A RECOMBINASES; RNA, RIBOSOMAL, 16S; ROOT NODULES, PLANT; SEQUENCE ANALYSIS, DNA; ZINC;

AMINOBACTER; ANTHYLLIS VULNERARIA; BACTERIA (MICROORGANISMS); MESORHIZOBIUM; MESORHIZOBIUM LOTI;

EID: 84856641145     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2011.11.002     Document Type: Article

References (26)

1. Ampomah O.Y., Huss-Danell K. Genetic diversity of root nodule bacteria nodulating Lotus corniculatus and Anthyllis vulneraria in Sweden. Syst. Appl. Microbiol. 2011, 10.1016/j.syapm.2011.01.006.
2. Andrews J.M. Determination of minimum inhibitory concentrations. J. Antimicrob. Chemother. 2001, 48:5-16.
3. Chen W., Kuo T. A simple and rapid method for the preparation of gram-negative bacterial genomic DNA. Nucleic Acids Res. 1993, 21:2260.
4. Estrella M.J., Munoz S., Soto M.J., Ruiz O., Sanjuán J. Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado River Basin (Argentina). Appl. Environ. Microbiol. 2009, 75:1088-1098.
5. Frérot H., Lefèbvre C., Gruber W., Collin C., Dos Santos A., Escarré J. Specific interactions between local metallicolous plants improve the phytostabilization of mine soils. Plant Soil 2006, 282:53-65.
6. Futamata H., Nagano Y., Watanabe K., Hiraishi A. Unique kinetic properties of phenol-degrading variovorax strains responsible for efficient trichloroethylene degradation in a chemostat enrichment culture. Appl. Environ. Microbiol. 2005, 71:904-911.
7. Jarvis B.D.W., Pankhurst C.E., Patel J.J. Rhizobium loti, a new species of legume root nodule bacteria. Int. J. Syst. Bacteriol. 1982, 32:378-380.
8. Jarvis B.D.W., Van Berkum P., Chen W.X., Nour S.M., Fernandez M.P., Cleyet-Marel J.C., Gillis M. Transfer of Rhizobium loti, Rhizobium huakuii, Rhizobium ciceri, Rhizobium mediterraneum, and Rhizobium tianshanense to Mesorhizobium gen. nov. Int. J. Syst. Bacteriol. 1997, 47:895-898.
9. MacDonald I.R., Kampfer P., Topp E., Warner K.L., Cox M.J., Hancock T.L.C., Miller L.G., Larkin M.J., Ducrocq V., Coulter C., Harper D.B., Murrell J.C., Oremland R.S. Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments. Int. J. Syst. Evol. Microbiol. 2005, 55:1827-1832.
10. Mahieu S., Frérot H., Vidal C., Galiana A., Heulin K., Maure L., Brunel B., Lefèbvre C., Escarré J., Cleyet-Marel J.-C. Anthyllis vulneraria/Mesorhizobium metallidurans, an efficient symbiotic nitrogen fixing association able to grow in mine tailings highly contaminated by Zn, Pb and Cd. Plant Soil 2011, 342(40):5-417.
11. Mesbah M., Premachandran U., Whitman W.B. Precise measurement of the G-C content of deoxyribonucleic acid by high performance liquid chromatography. Int. J. Syst. Bacteriol. 1989, 39:159-167.
12. Nandasena K.G., O'Hara G.W., Tiwari R.P., Willems A., Howieson J.G. Mesorhizobium ciceri biovar biserrulae, a novel biovar nodulating the pasture legume Biserrula pelecinus L. Int. J. Syst. Evol. Microbiol. 2007, 57:1041-1045.
13. Nandasena K.G., O'Hara G.W., Tiwari R.P., Willems A., Howieson J.G. Mesorhizobium australicum sp. nov. and Mesorhizobium opportunistum sp. nov., isolated from Biserrula pelecinus L. in Australia. Int. J. Syst. Evol. Microbiol. 2009, 59:2140-2147.
14. Novikova N., Pavlova E.A., Limeshchenko E.V. Phage sensitivity and host range of Rhizobium strains isolated from root nodules of temperate legumes. Plant Soil 1993, 1:45-53.
15. Osborn R.K, Haydock P.P.J., Edwards S.G. Isolation and identification of oxamyl-degrading bacteria from UK agricultural soils. Soil Biol. Biochem. 2010, 42:998-1000.
16. Quemeneur M., Heinrich-Salmeron A., Muller D., Lievremont D., Jauzein M., Bertin P.N., Garrido F., Joulian C. Diversity surveys and evolutionary relationships of aoxB genes in aerobic arsenite-oxidizing bacteria. Appl. Environ. Microbiol. 2008, 74:4567-4573.
17. Requena N., Perez-Solis E., Azcón-Aguilar C., Jeffries P., Barea J.M. Management of indigenous plant-microbe symbioses aids restoration of desertified. Appl. Environ. Microbiol. 2001, 67:495-498.
18. Sheoran V., Sheoran A.S., Poonia P. Soil reclamation of abandoned mine land by revegetation: a review. Int. J. Soil Sediment. Water 2010, 3(2). Art. 13 ISSN: 1940-3259.
19. Sjoholm O.R., Aamand J., Sorensen J., Nybroe O. Degrader density determines spatial variability of 2,6-dichlorobenzamide mineralisation in soil. Environ. Pollut. 2010, 158:292-298.
20. Stepkowski T., Hughes C.E., Law I.J., Markiewicz L., Gurda D., Chlebicka A., Moulin L. Diversification of lupin Bradyrhizobium strains: evidence from nodulation gene trees. Appl. Environ. Microbiol. 2007, 73:3254-3264.
21. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol. Biol. Evol. 2007, 24:1596-1599.
22. Turnau K., Ostachowicz B., Wojtczak G., Anielska T., Sobczyk L. Metal uptake by xerothermic plants introduced into Zn-Pb industrial wastes. Plant Soil 2010, 337:299-311.
23. Urakami T., Araki H., Oyanagi H., Suzuki K.-I., Komagata K. Transfer of Pseudomonas aminovorans (den Dooren de Jong 1926) to Aminobacter gen. nov. as Aminobacter aminovorans comb. nov. and description of Aminobacter aganoensis sp. nov. and Aminobacter niigataensis sp. nov. Int. J. Syst. Evol. Microbiol. 1992, 42:84-92.
24. Vidal C., Chantreuil C., Berge O., Maure L., Escarre J., Bena G., Brunel B., Cleyet-Marel J.-C. Mesorhizobium metallidurans sp. nov., a metal-resistant symbiont of Anthyllis vulneraria growing on metallicolous soil in Languedoc, France. Int. J. Syst. Evol. Microbiol. 2009, 59:850-855.
25. Wayne L.G., Brenner D.J., Colwell R.R., Grimont P.A.D., Kandler O., Krichevsky M.I., Moore L.H., Moore W.E.C., Murray R.G.E., Stackebrandt E., Starr M.P., Trüper H.G. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 1987, 37:463-464.
26. Willems A., Doignon-Bourcier F., Goris J., Coopman R., de Lajudie P., De Vos P., Gillis M. DNA-DNA hybridization study of Bradyrhizobium strains. Int. J. Syst. Evol. Microbiol. 2001, 51:1315-1322.