Mesorhizobium metallidurans sp. nov., a metal-resistant symbiont of Anthyllis vulneraria growing on metallicolous soil in Languedoc, France

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 4, 2009, Pages 850-855

  Vidal, Céline ^a   Chantreuil, Clémence ^a   Berge, Odile ^b   Mauré, Lucette ^a   Escarré, José ^c   Béna, Gilles ^a   Brunel, Brigitte ^a   Cleyet Marel, Jean Claude ^a  

^a LABORATOIRE DES SYMBIOSES TROPICALES ET MÉDITERRANÉENNES   (France)

^b CNRS   (France)

^c CENTRE D ECOLOGIE FONCTIONNELLE ET EVOLUTIVE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; ANTIBIOTIC AGENT; CEFUROXIME; ERYTHROMYCIN; GENTAMICIN; METAL; PENICILLIN G; POLYMYXIN B; PROTEIN ATPD; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; RECA PROTEIN; RNA 16S; TETRACYCLINE; UNCLASSIFIED DRUG; ZINC; BACTERIAL DNA; BACTERIAL PROTEIN; CADMIUM; RIBOSOME DNA; TRANSCRIPTION FACTOR;

ANTHYLLIS VULNERARIA; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIUM ISOLATION; CHROMOSOME MARKER; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; FRANCE; GRAM NEGATIVE BACTERIUM; LEGUME; MESORHIZOBIUM; MESORHIZOBIUM MEDITERRANEUM; MESORHIZOBIUM METALLIDURANS; MESORHIZOBIUM TIANSHANENSE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PLANT GROWTH; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SOIL; SYMBIONT; TAXONOMIC IDENTIFICATION; ALPHAPROTEOBACTERIA; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; DRUG EFFECT; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; SEQUENCE HOMOLOGY;

ANTHYLLIS VULNERARIA; MESORHIZOBIUM; MESORHIZOBIUM MEDITERRANEUM; MESORHIZOBIUM TIANSHANENSE; NEGIBACTERIA;

ALPHAPROTEOBACTERIA; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; CADMIUM; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FABACEAE; FRANCE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; REC A RECOMBINASES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSCRIPTION FACTORS; ZINC;

EID: 66149143213     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.003327-0     Document Type: Article

References (35)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Andrews, J. M. (2001). Determination of minimum inhibitory concentrations. J Antimicrob Chemother 48, 5-16.
3. Bertrand, H., Plassard, C., Pinochet, X., Touraine, B., Normand, P. & Cleyet-Marel, J.-C. (2000). Stimulation of the ionic-transport system in Brassica napus by a plant growth-promoting rhizobacterium (Achromobacter sp.). Can J Microbiol 46, 229-236.
4. Cervantes, C. & Gutierrez-Corona, F. (1994). Copper resistance mechanisms in bacteria and fungi. FEMS Microbiol Rev 14, 121-137.
5. Chen, W. X., Li, G. S., Qi, Y. L., Wang, E. T., Yuan, H. L. & Li, J. L. (1991). Rhizobium huakuii sp. nov. isolated from the root nodules of Astragalus sinicus. Int J Syst Bacteriol 41, 275-280.
6. Chen, W., Wang, E., Wang, S., Li, Y. & Chen, X. (1995). Characteristics of Rhizobium tianshanense sp. nov., a moderately and slowly growing root nodule bacterium isolated from an arid saline environment in Xinjiang, People's Republic of China. Int J Syst Bacteriol 45, 153-159.
7. de Lajudie, P., Willems, A., Nick, G., Moreira, F., Molouba, F., Hoste, B., Torck, U., Neyra, M., Collins, M. D. & other authors (1998). Characterization of tropical tree rhizobia and description of Mesorhizobium plurifarium sp. nov. Int J Syst Bacteriol 48, 369-382.
8. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
9. Frérot, H., Lefèbvre, C., Gruber, W., Collin, C., Dos Santos, A. & Escarré, J. (2006). Specific interactions between local metallicolous plants improve the phytostabilization of mine soils. Plant Soil 282, 53-65.
10. Gao, J.-L., Turner, S. L., Kan, F. L., Wang, E. T., Tan, Z. Y., Qiu, Y. H., Gu, J., Terefework, Z., Young, J. P. & other authors (2004). Mesorhizobium septentrionale sp. nov. and Mesorhizobium temperatum sp. nov., isolated from Astragalus adsurgens growing in the northern regions of China. Int J Syst Evol Microbiol 54, 2003-2012.
11. Gaunt, M. W., Turner, S. L., Rigottier-Gois, L., Lloyd-Macgilp, S. A. & Young, J. P. W. (2001). Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia. Int J Syst Evol Microbiol 51, 2037-2048.
12. Ghosh, W. & Roy, P. (2006). Mesorhizobium thiogangeticum sp. nov., a novel sulfur-oxidizing chemolithoautotroph from rhizosphere soil of an Indian tropical leguminous plant. Int J Syst Evol Microbiol 56, 91-97.
13. Jarvis, B. D. W., Pankhurst, C. E. & Patel, J. J. (1982). Rhizobium loti, a new species of legume root nodule bacteria. Int J Syst Bacteriol 32, 378-380.
14. Jarvis, B. D. W., van Berkum, P., Chen, W. X., Nour, S. M., Fernandez, M. P., Cleyet-Marel, J. C. & Gillis, M. (1997). Transfer of Rhizobium loti, Rhizobium huakuii, Rhizobium ciceri, Rhizobium mediterraneum, and Rhizobium tianshanense to Mesorhizobium gen. nov. Int J Syst Bacteriol 47, 895-898.
15. Kwon, S.-W., Park, J.-Y., Kim, J.-S., Kang, J.-W., Cho, Y.-H., Lim, C.-K., Parker, M. A. & Lee, G.-B. (2005). Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences. Int J Syst Evol Microbiol 55, 263-270.
16. Nicholas, K. B. & Nicholas, H. B. (1997). GeneDoc: a tool for editing and annotating multiple sequence alignments, v2.6.001. Distributed by the authors. http://www.nrbsc.org/gfx/genedoc/
17. Nies, D. H. (2003). Efflux-mediated heavy metal resistance in prokaryotes. FEMS Microbiol Rev 27, 313-339.
18. Normand, P., Cournoyer, B., Simonet, P. & Nazaret, S. (1992). Analysis of a ribosomal RNA operon in the actinomycete Frankia. Gene 111, 119-124.
19. Nour, S. M., Fernandez, M. P., Normand, P. & Cleyet-Marel, J. C. (1994). Rhizobium ciceri sp. nov., consisting of strains that nodulate chickpeas (Cicer arietinum L.). Int J Syst Bacteriol 44, 511-522.
20. Nour, S. M., Cleyet-Marel, J. C., Normand, P. & Fernandez, M. P. (1995). Genomic heterogeneity of strains nodulating chickpeas ( Cicer arietinum L.) and description of Rhizobium mediterraneum sp. nov. Int J Syst Bacteriol 45, 640-648.
21. Page, R. D. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
22. Posada, D. & Crandall, K. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818.
23. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
24. Swofford, D. L. (1998). PAUP: Phylogenetic analysis using parsimony (and other methods). Sunderland, MA: Sinauer Associates.
25. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
26. Velazquez, E., Igual, J., Willems, A., Fernández, M. P., Muñoz, E., Mateos, P. F., Abril, A., Toro, N., Normand, P. & other authors (2001). Mesorhizobium chacoense sp. nov., a novel species that nodulates Prosopis alba in the Chaco Arido region (Argentina). Int J Syst Evol Microbiol 51, 1011-1021.
27. Vincent, J. M. (1970). The cultivation, isolation and maintenance of rhizobia. In A Manual for the Practical Study of the Root-Nodule Bacteria, pp. 1-13. Edited by J. M. Vincent. Oxford: Blackwell Scientific.
28. Vinuesa, P., Silva, C., Lorite, M. J., Izaguirre-Mayoral, M. L., Bedmar, E. J. & Martinez-Romero, E. (2005). Molecular systematics of rhizobia based on maximum likelihood and Bayesian phylogenies inferred from rrs, atpD, recA and nifH sequences, and their use in the classification of Sesbania microsymbionts from Venezuelan wetlands. Syst Appl Microbiol 28, 702-716.
29. Wang, E. T., van Berkum, P., Sui, X. H., Beyene, D., Chen, W. X. & Martinez-Romero, E. (1999). Diversity of rhizobia associated with Amorpha fruticosa isolated from Chinese soils and description of Mesorhizobium amorphae sp. nov. Int J Syst Bacteriol 49, 51-65.
30. Wang, F. Q., Wang, E. T., Liu, J., Chen, Q., Sui, X. H., Chen, W. F. & Chen, W. X. (2007). Mesorhizobium albiziae sp. nov., a novel bacterium that nodulates Albizia kalkora in a subtropical region of China. Int J Syst Evol Microbiol 57, 1192-1199.
31. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
32. Weir, B. S., Turner, S. J., Silvester, W. B., Park, D.-C. & Young, J. M. (2004). Unexpectedly diverse Mesorhizobium strains and Rhizobium leguminosarum nodulate native legume genera of New Zealand, while introduced legume weeds are nodulated by Bradyrhizobium species. Appl Environ Microbiol 70, 5980-5987.
33. Willems, A., Doignon-Bourcier, F., Goris, J., Coopman, R., de Lajudie, P., De Vos, P. & Gillis, M. (2001). DNA-DNA hybridization study of Bradyrhizobium strains. Int J Syst Evol Microbiol 51, 1315-1322.
34. Wuertz, S. & Mergeay, M. (1997). Impact of heavy metals on soil microbial communities and their activities. In Modern Soil Microbiology, pp. 607-642. Edited by J. D. Elsas, J. T. Trevors & E. M. H. Wellington. New York: Marcel Dekker.
35. Yang, Z. (1997). PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 15, 555-556.