Flavobacterium chilense sp. nov. and Flavobacterium araucananum sp. nov., isolated from farmed salmonid fish

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 6, 2012, Pages 1402-1408

  Kampfer P ^a   Lodders, N ^a   Martin, K ^b   Avendano Herrera R ^c  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b HANS KNÖLL INSTITUTE   (Germany)

^c UNIVERSIDAD ANDRÉS BELLO   (Chile)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOLIPID; FATTY ACID; LIPID; MENAQUINONE; MK 6; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLSERINE; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; ATLANTIC SALMON; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHILE; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; FLAVOBACTERIUM; FLAVOBACTERIUM AQUIDURENSE; FLAVOBACTERIUM ARAUCANANUM; FLAVOBACTERIUM CHILENSE; FLAVOBACTERIUM CHUNGANGENSE; FLAVOBACTERIUM FRIGIDIMARIS; FLAVOBACTERIUM GLACIEI; FLAVOBACTERIUM HERCYNIUM; FLAVOBACTERIUM PECTINOVORUM; FLAVOBACTERIUM SACCHAROPHILUM; GENE SEQUENCE; GENUS; HYDROXYLATION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PISCICULTURE; PRIORITY JOURNAL; RAINBOW TROUT; RNA SEQUENCE; SALMONID;

ANIMALS; CHILE; DNA, BACTERIAL; FATTY ACIDS; FISH DISEASES; FLAVOBACTERIACEAE INFECTIONS; FLAVOBACTERIUM; MOLECULAR SEQUENCE DATA; ONCORHYNCHUS MYKISS; PHYLOGENY; RNA, RIBOSOMAL, 16S;

FLAVOBACTERIUM; FLAVOBACTERIUM FRIGIDIMARIS; FLAVOBACTERIUM PECTINOVORUM; FLAVOBACTERIUM SACCHAROPHILUM; ONCORHYNCHUS MYKISS; SALMO SALAR; SALMONIDAE;

EID: 84856636787     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.033431-0     Document Type: Article

References (24)

1. Bernardet, J. F. & Bowman, J. P. (2006). The genus Flavobacterium. In The Prokaryotes. A Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 481-531. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
2. Bernardet, J. F. & Bowman, J. P. (2011). Genus I. Flavobacterium. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 4, pp. 112-154. Edited byN.R. Krieg, J.T. Staley, D. R. Brown, B. P. Hedlund, B. J. Paster, N. L. Ward, W. Ludwig & W. B. Whitman. New York: Springer.
3. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
4. Bernardet, J. F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
5. CLSI (2006). Methods for antimicrobial disk susceptibility testing of bacteria isolated from aquatic animals; approved guideline. CLSI document M42-A. Wayne, PA: Clinical and Laboratory Standards Institute.
6. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
7. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
8. Cousin, S., Päuker, O. & Stackebrandt, E. (2007). Flavobacterium aquidurense sp. nov. and Flavobacterium hercynium sp. nov., from a hard-water creek. Int J Syst Evol Microbiol 57, 243-249.
9. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
10. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
11. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
12. Kämpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterisation of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227-251.
13. Kämpfer, P., Dreyer, U., Neef, A., Dott, W. & Busse, H.-J. (2003). Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53, 93-97.
14. Kim, J.-H., Kim, K.-Y. & Cha, C.-J. (2009). Flavobacterium chungangense sp. nov., isolated from a freshwater lake. Int J Syst Evol Microbiol 59, 1754-1758.
15. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
16. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
17. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
18. Nogi, Y., Soda, K. & Oikawa, T. (2005). Flavobacterium frigidimaris sp. nov., isolated from Antarctic seawater. Syst Appl Microbiol 28, 310-315.
19. Olsen, G. J., Matsuda, H., Hagstrom, R. & Overbeek, R. (1994). fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10, 41-48.
20. Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J. & Glöckner, F. O. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35, 7188-7196.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
23. Zhang, D.-C., Wang, H.-X., Liu, H.-C., Dong, X.-Z. & Zhou, P.-J. (2006). Flavobacterium glaciei sp. nov., a novel psychrophilic bacterium isolated from the China No.1 glacier. Int J Syst Evol Microbiol 56, 2921-2925.
24. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.