Isolation and characterization of Microbulbifer species 6532A degrading seaweed thalli to single cell detritus particles

Biodegradation

Volumn 23, Issue 1, 2012, Pages 93-105

  Wakabayashi, Masayuki ^a   Sakatoku, Akihiro ^a   Noda, Fumio ^b   Noda, Minoru ^b   Tanaka, Daisuke ^a   Nakamura, Shogo ^a  

^a UNIVERSITY OF TOYAMA   (Japan)

^b Sugiyo Co Ltd   (Japan)

Author keywords

Alginate lyase; Cellulase; Degradation; Microbulbifer; Seaweed

Indexed keywords

16S RRNA GENE; ALGINATE LYASE; AMINO ACID SEQUENCE; BACTERIAL ISOLATES; CELLULASE; CLONING AND SEQUENCING; CULTURE MEDIUM; D-ARABINOSE; DRIFTING MACROALGAE; ISOLATION AND CHARACTERIZATION; MICROBULBIFER; OPEN READING FRAME; SEQUENCE SIMILARITY; SINGLE CELL DETRITUS; UNDARIA PINNATIFIDA; ZYMOGRAM ANALYSIS;

ALGINATE; AMINO ACIDS; CELL CULTURE; DEGRADATION; ENZYMES; GENES; GENETIC ENGINEERING; RNA; SEAWEED;

BACTERIA;

ALGINIC ACID; BACTERIAL RNA; CELLULOSE; GLUCURONIC ACID; HEXURONIC ACID; POLY(BETA D MANNURONATE) LYASE; POLY(BETA-D-MANNURONATE) LYASE; POLYSACCHARIDE LYASE; RNA 16S;

BACTERIUM; BIODEGRADATION; DETRITUS; ENZYME ACTIVITY; GENE EXPRESSION; MACROALGA; MARINE TECHNOLOGY; MORPHOLOGY; MOTILITY; POLYSACCHARIDE; SEAWEED;

ALTEROMONADACEAE; AMINO ACID SEQUENCE; ARTICLE; BACTERIUM IDENTIFICATION; BIOSYNTHESIS; DNA SEQUENCE; ELECTRON MICROSCOPY; ENZYMOLOGY; GENETICS; HYDROLYSIS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; OPEN READING FRAME; PARTICLE SIZE; PHASE CONTRAST MICROSCOPY; PHYLOGENY; SEAWEED; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; UNDARIA;

ALGINATES; ALTEROMONADACEAE; AMINO ACID SEQUENCE; BACTERIAL TYPING TECHNIQUES; CELLULOSE; GLUCURONIC ACID; HEXURONIC ACIDS; HYDROLYSIS; MICROSCOPY, ELECTRON; MICROSCOPY, PHASE-CONTRAST; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PARTICLE SIZE; PHYLOGENY; POLYSACCHARIDE-LYASES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEAWEED; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; UNDARIA;

CHUBU; HONSHU; JAPAN; TOYAMA [CHUBU]; TOYAMA BAY;

BACTERIA (MICROORGANISMS); MICROBULBIFER; MICROBULBIFER ELONGATUS; SACCHAROPHAGUS; UNDARIA; UNDARIA PINNATIFIDA;

EID: 84856636431     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-011-9489-6     Document Type: Article

References (34)

1. Alderkamp AC, Rijssel M, Bolhuis H (2007) Characterization of marine bacteria and the activity of their enzyme systems involved in degradation of the algal storage glucan laminarin. FEMS Microbiol Ecol 59: 108-117.
2. Camacho P, Salinas JM, Fuertes C et al (2004) Preparation of single cell detritus from Laminaria saccharina as a hatchery diet for bivalve mollusks. Mar Biotechnol 6: 642-649.
3. Fu XT, Kim SM (2010) Agarase: review of major sources, categories, purification method, enzyme characteristics and applications. Mar Drugs 8: 200-218.
4. Higashihara T, Sato A, Shimizu U (1978) An MPN method for the enumeration of marine hydrocarbon degrading bacteria. Nippon Suisan Gakkaishi 44: 1127-1134.
5. Holtkamp AD, Kelly S, Ulber R et al (2009) Fucoidans and fucoidanases-focus on techniques for molecular structure elucidation and modification of marine polysaccharides. Appl Microbiol Biotechnol 82: 1-11.
6. Horikoshi K (1999) Alkaliphiles: some applications of their products for biotechnology. Microbiol Mol Biol Rev 63: 735-750.
7. Howard MB, Ekborg NA, Taylor LE et al (2004) Identification and analysis of polyserine linker domains in Prokaryotic proteins with emphasis on the marine bacterium Microbulbifer degradans. Protein Sci 13: 1422-1425.
8. Jensen A (1993) Present and future needs for algae and algal products. Hydrobiologia 260(261): 15-23.
9. Jonnadula R, Verma P, Shouche YS et al (2009) Characterization of Microbulbifer strain CMC-5, a new biochemical variant of Microbulbifer elongatus type strain DSM6810T isolated from decomposing seaweeds. Curr Microbiol 59: 600-607.
10. Kobayashi T, Uchimura K, Miyazaki M et al (2009) A new high-alkaline alginate lyase from a deep-sea bacterium Agarivorans sp. Extremophiles 13: 121-129.
11. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
12. Liu D, Keesing JK, Xing Q et al (2009) World's largest macroalgal bloom caused by expansion of seaweed aquaculture in China. Mar Poll Bull 58: 888-895.
13. Michel G, Nyval-Collen P, Barbeyron T et al (2006) Bioconversion of red seaweed galactans: a focus on bacterial agarases and carrageenases. Appl Microbiol Biotechnol 71: 23-33.
14. Miller MB, Bassler BL (2001) Quorum sensing in bacteria. Annu Rev Microbiol 55: 165-199.
15. Morand P, Merceron M (2005) Macroalgal population and sustainability. J Coastal Res 21: 1009-1020.
16. Nishijima M, Takadera T, Imamura N et al (2009) Microbulbifer variabilis sp. nov. and Microbulbifer epialgicus sp. nov., isolated from Pacific marine algae, possess a rod-coccus cell cycle in association with the growth phase. Int J Syst Evol Microbiol 59: 1696-1707.
17. Ohta Y, Hatada Y, Nogi Y et al (2004) Enzymatic properties and nucleotide and amino acid sequences of a thermostable β-agarase from a novel species of deep-sea Microbulbifer. App Microbiol Biotechnol 64: 505-514.
18. Osawa T, Matsubara Y, Muramatsu T et al (2005) Crystal structure of the alginate (poly α-l-guluronate) lyase from Corynebacterium sp. at 1. 2 Å resolution. J Mol Biol 345: 1111-1118.
19. Pecina A, Paneque A (1994) Detection of alginate lyase by activity staining after sodium dodecil sulfate-polyacrylamide gel electrophoresis and subsequent renaturation. Anal Biochem 217: 124-127.
20. Qin S, Jiang P, Tseng C (2005) Transforming kelp into a marine bioreactor. Trends Biotechnol 23: 264-268.
21. Ross AB, Jones JM, Kubacki ML et al (2008) Classification of macroalgae as fuel and its thermochemical behavior. Biores Technol 99: 6494-6504.
22. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
23. Schwarz WH, Bronnenmeier K, Gräbnitz F et al (1987) Activity staining of cellulases in polyacrylamide gels containing mixed linkage β-glucans. Anal Biochem 164: 72-77.
24. Somogyi M (1952) Notes on sugar determination. J Biol Chem 195: 19-23.
25. T. J Bacteriol 188: 3849-3861.
26. Tseng CK (2001) Algal biotechnology industries and research activities in China. J Appl Phycol 13: 375-380.
27. Uchida M (1995) Enzyme activities of marine bacteria involved in Laminaria-thallus decomposition and the resulting sugar release. Mar Biotechnol 123: 639-644.
28. Uchida M (1996) Formation of single cell detritus density covered with bacteria during experimental degradation of Laminaria japonica thalli. Fish Sci 62: 731-736.
29. Uchida M, Nakayama A (1993) Isolation of Laminaria-frond decomposing bacteria from Japanese coastal waters. Nippon Suisan Gakkaishi 59: 1865-1871.
30. Uchida M, Nakata K, Maeda M (1997) Introduction of detrital food webs into an aquaculture system by supplying single cell algal detritus produced from Laminaria japonica as a hatchery diet for Artemia nauplii. Aquaculture 154: 125-137.
31. Uchimura K, Miyazaki M, Nogi Y et al (2009) Cloning and sequencing of alginate lyase genes from deep-sea strains of Vibrio and Agarivorans and characterization of a new Vibrio enzyme. Mar Biotechnol. doi: 10. 1007/s10126-009-9237-7.
32. Whitehead NA, Barnard AML, Slater H et al (2001) Quorum-sensing in gram-negative bacteria. FEMS Microbiol Rev 25: 365-404.
33. Wong TY, Preston LA, Sciller NL (2000) Alginate lyase: review of major sources and enzyme characteristics, structure-function analysis, biological roles, and applications. Annu Rev Microbiol 54: 289-340.
34. Yoon J-H, Kim H, Kang KH et al (2003) Transfer of Pseudomonas elongata Humm 1946 to the genus Microbulbifer as Microbulbifer elongatus comb. nov. Int J Syst Evol Microbiol 53: 1357-1361.