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Volumn 28, Issue 3, 2012, Pages 403-410

Snpxge 2: A database for human SNP-coexpression associations

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DISEASES; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETIC DATABASE; GENETICS; HAPLOTYPE MAP; HUMAN; MEDICAL GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84856576529     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr663     Document Type: Article
Times cited : (11)

References (28)
  • 1
    • 77950669243 scopus 로고    scopus 로고
    • The developmental expression dynamics of Drosophila melanogaster transcription factors
    • Adryan, B. and Teichmann, S.A. (2010) The developmental expression dynamics of Drosophila melanogaster transcription factors. Genome Biol., 11, R40.
    • (2010) Genome Biol. , vol.11
    • Adryan, B.1    Teichmann, S.A.2
  • 2
    • 0001677717 scopus 로고
    • Controlling the false discovery rate - a practical and powerful approach to multiple testing
    • Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate - a practical and powerful approach to multiple testing. J. R. Stat. Soc. B, 57, 289-300.
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 3
    • 0037370311 scopus 로고    scopus 로고
    • Natural variation in human gene expression assessed in lymphoblastoid cells
    • Cheung, V.G. et al. (2003) Natural variation in human gene expression assessed in lymphoblastoid cells. Nat. Genet., 33, 422-425.
    • (2003) Nat. Genet. , vol.33 , pp. 422-425
    • Cheung, V.G.1
  • 4
    • 28944444652 scopus 로고    scopus 로고
    • Differential coexpression analysis using microarray data and its application to human cancer
    • Choi, J.K. et al. (2005) Differential coexpression analysis using microarray data and its application to human cancer. Bioinformatics, 21, 4348-4355.
    • (2005) Bioinformatics , vol.21 , pp. 4348-4355
    • Choi, J.K.1
  • 5
    • 34548058037 scopus 로고    scopus 로고
    • Searching for differentially expressed gene combinations
    • Dettling, M. et al. (2005) Searching for differentially expressed gene combinations. Genome Biol., 6, R88.
    • (2005) Genome Biol. , vol.6
    • Dettling, M.1
  • 6
    • 42749097422 scopus 로고    scopus 로고
    • Genetic architecture of transcript-level variation in humans
    • Duan, S. et al. (2008) Genetic architecture of transcript-level variation in humans. Am. J. Hum. Genet., 82, 1101-1113.
    • (2008) Am. J. Hum. Genet. , vol.82 , pp. 1101-1113
    • Duan, S.1
  • 7
    • 75249089572 scopus 로고    scopus 로고
    • SCAN: SNP and copy number annotation
    • Gamazon, E.R. et al. (2010) SCAN: SNP and copy number annotation. Bioinformatics, 26, 259-262.
    • (2010) Bioinformatics , vol.26 , pp. 259-262
    • Gamazon, E.R.1
  • 8
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • Gibbs, R.A. et al. (2003) The International HapMap Project. Nature, 426, 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
    • Gibbs, R.A.1
  • 9
    • 73349126396 scopus 로고    scopus 로고
    • Geographical genomics of human leukocyte gene expression variation in southern Morocco
    • Idaghdour, Y. et al. (2010) Geographical genomics of human leukocyte gene expression variation in southern Morocco. Nat. Genet., 42, 62-67.
    • (2010) Nat. Genet. , vol.42 , pp. 62-67
    • Idaghdour, Y.1
  • 10
    • 78149464701 scopus 로고    scopus 로고
    • Bacterial population genomics and infectious disease diagnostics
    • Joseph, S.J. and Read, T.D. (2010) Bacterial population genomics and infectious disease diagnostics. Trends Biotechnol., 28, 611-618.
    • (2010) Trends Biotechnol , vol.28 , pp. 611-618
    • Joseph, S.J.1    Read, T.D.2
  • 11
    • 70350688151 scopus 로고    scopus 로고
    • Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data
    • Kayano, M. et al. (2009) Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data. Bioinformatics, 25, 2735-2743.
    • (2009) Bioinformatics , vol.25 , pp. 2735-2743
    • Kayano, M.1
  • 12
    • 77955343193 scopus 로고    scopus 로고
    • Cloud-scale RNA-sequencing differential expression analysis with Myrna
    • Langmead, B. et al. (2010) Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biol., 11, R83.
    • (2010) Genome Biol. , vol.11
    • Langmead, B.1
  • 13
    • 3042514191 scopus 로고    scopus 로고
    • Coexpression analysis of human genes across many microarray data sets
    • Lee, H.K. et al. (2004) Coexpression analysis of human genes across many microarray data sets. Genome Res., 14, 1085-1094.
    • (2004) Genome Res. , vol.14 , pp. 1085-1094
    • Lee, H.K.1
  • 14
    • 8144222791 scopus 로고    scopus 로고
    • A system for enhancing genome-wide coexpression dynamics study
    • Li, K.C. et al. (2004) A system for enhancing genome-wide coexpression dynamics study. Proc. Natl Acad. Sci. USA, 101, 15561-15566.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 15561-15566
    • Li, K.C.1
  • 15
    • 70350731110 scopus 로고    scopus 로고
    • Coexpression network based on natural variation in human gene expression reveals gene interactions and functions
    • Nayak, R.R. et al. (2009) Coexpression network based on natural variation in human gene expression reveals gene interactions and functions. Genome Res., 19, 1953-1962.
    • (2009) Genome Res. , vol.19 , pp. 1953-1962
    • Nayak, R.R.1
  • 16
    • 78651280402 scopus 로고    scopus 로고
    • COXPRESdb: a database to compare gene coexpression in seven model animals
    • Obayashi, T. and Kinoshita, K. (2011) COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res., 39, D1016-D1022.
    • (2011) Nucleic Acids Res. , vol.39
    • Obayashi, T.1    Kinoshita, K.2
  • 17
    • 77950460661 scopus 로고    scopus 로고
    • Understanding mechanisms underlying human gene expression variation with RNA sequencing
    • Pickrell, J.K. et al. (2010) Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature, 464, 768-772.
    • (2010) Nature , vol.464 , pp. 768-772
    • Pickrell, J.K.1
  • 18
    • 33846631884 scopus 로고    scopus 로고
    • Common genetic variants account for differences in gene expression among ethnic groups
    • Spielman, R.S. et al. (2007) Common genetic variants account for differences in gene expression among ethnic groups. Nat. Genet., 39, 226-231.
    • (2007) Nat. Genet. , vol.39 , pp. 226-231
    • Spielman, R.S.1
  • 19
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J.D. and Tibshirani, R. (2003) Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA, 100, 9440-9445.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 20
    • 55449112185 scopus 로고    scopus 로고
    • Genome-wide associations of gene expression variation in humans
    • Stranger, B.E. et al. (2005) Genome-wide associations of gene expression variation in humans. PLoS Genet., 1, e78.
    • (2005) PLoS Genet , vol.1
    • Stranger, B.E.1
  • 21
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • Stranger, B.E. et al. (2007a) Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science, 315, 848-853.
    • (2007) Science , vol.315 , pp. 848-853
    • Stranger, B.E.1
  • 22
    • 34548738566 scopus 로고    scopus 로고
    • Population genomics of human gene expression
    • Stranger, B.E. et al. (2007b) Population genomics of human gene expression. Nat. Genet., 39, 1217-1224.
    • (2007) Nat. Genet. , vol.39 , pp. 1217-1224
    • Stranger, B.E.1
  • 23
    • 55449112450 scopus 로고    scopus 로고
    • High-resolution mapping of expression-QTLs yields insight into human gene regulation
    • Veyrieras, J.B. et al. (2008) High-resolution mapping of expression-QTLs yields insight into human gene regulation. PLoS Genet., 4, e1000214.
    • (2008) PLoS Genet , vol.4
    • Veyrieras, J.B.1
  • 24
    • 75149143994 scopus 로고    scopus 로고
    • Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same
    • Weirauch, M.T. and Hughes, T.R. (2010) Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same. Trends Genet., 26, 66-74.
    • (2010) Trends Genet , vol.26 , pp. 66-74
    • Weirauch, M.T.1    Hughes, T.R.2
  • 25
    • 71749100795 scopus 로고    scopus 로고
    • Evolution of transcriptional control in mammals
    • Wilson, M.D. and Odom, D.T. (2009) Evolution of transcriptional control in mammals. Curr. Opin. Genet. Dev., 19, 579-585.
    • (2009) Curr. Opin. Genet. Dev. , vol.19 , pp. 579-585
    • Wilson, M.D.1    Odom, D.T.2
  • 26
    • 0042697343 scopus 로고    scopus 로고
    • The evolution of transcriptional regulation in eukaryotes
    • Wray, G.A. et al. (2003) The evolution of transcriptional regulation in eukaryotes. Mol. Biol. Evol., 20, 1377-1419.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1377-1419
    • Wray, G.A.1
  • 27
    • 77957232748 scopus 로고    scopus 로고
    • Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies
    • Yang, T.P. et al. (2010) Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies. Bioinformatics, 26, 2474-2476.
    • (2010) Bioinformatics , vol.26 , pp. 2474-2476
    • Yang, T.P.1
  • 28
    • 41149161113 scopus 로고    scopus 로고
    • Evaluation of genetic variation contributing to differences in gene expression between populations
    • Zhang, W. et al. (2008) Evaluation of genetic variation contributing to differences in gene expression between populations. Am. J. Hum. Genet., 82, 631-640.
    • (2008) Am. J. Hum. Genet. , vol.82 , pp. 631-640
    • Zhang, W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.