Microsatellites in immune-relevant regions and their associations with Maedi-Visna and ovine pulmonary adenocarcinoma viral diseases

Veterinary Immunology and Immunopathology

Volumn 145, Issue 1-2, 2012, Pages 438-446

  Larruskain, A ^a   Minguijon E ^b   Arostegui, I ^a   Moreno, B ^b   Juste, R A ^b   Jugo, B M ^a  

^a UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

^b NEIKER and a Vaccine producing Commercial Company CZVSL   (Spain)

Author keywords

Association analysis; Cytokines; Maedi Visna; Major histocompatibility complex; Microsatellites; Ovine pulmonary adenocarcinoma

Indexed keywords

GAMMA INTERFERON; INTERLEUKIN 12P35; MICROSATELLITE DNA;

ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; DISEASE COURSE; GENE FREQUENCY; GENE LOCUS; GENETIC ASSOCIATION; GENETIC SUSCEPTIBILITY; GENETIC VARIABILITY; GENOTYPE; HAPLOTYPE; IMMUNOPATHOLOGY; JAAGSIEKTE; MAEDI VISNA; MAJOR HISTOCOMPATIBILITY COMPLEX; MICROSATELLITE MARKER; NONHUMAN; NUCLEOTIDE SEQUENCE;

ALLELES; ANIMALS; GENE FREQUENCY; GENES, MHC CLASS I; GENES, MHC CLASS II; GENETIC ASSOCIATION STUDIES; GENETIC PREDISPOSITION TO DISEASE; GENOTYPE; HAPLOTYPES; INTERFERON-GAMMA; INTERLEUKIN-12; MAJOR HISTOCOMPATIBILITY COMPLEX; MICROSATELLITE REPEATS; PNEUMONIA, PROGRESSIVE INTERSTITIAL, OF SHEEP; PULMONARY ADENOMATOSIS, OVINE; SHEEP; VISNA-MAEDI VIRUS;

ANIMALIA; OVIS; OVIS ARIES;

EID: 84856558810     PISSN: 01652427     EISSN: 18732534     Source Type: Journal    
DOI: 10.1016/j.vetimm.2011.12.020     Document Type: Article

References (37)

1. Andresdottir V., Tang X., Agnarsdottir G., Andresson O.S., Georgsson G., Skraban R., Torsteinsdottir S., Rafnar B., Benediktsdottir E., Matthiasdottir S., Arnadottir S., Hognadottir S., Palsson P.A., Petursson G. Biological and genetic differences between lung- and brain-derived isolates of maedi-visna virus. Virus Genes 1998, 16:281-293.
2. Ballingall K.T., Miltiadou D., Chai Z.W., McLean K., Rocchi M., Yaga R., McKeever D.J. Genetic and proteomic analysis of the MHC class I repertoire from four ovine haplotypes. Immunogenetics 2008, 60:177-184.
3. Blattman A.N., Beh K.J. Dinucleotide repeat polymorphism within the ovine major histocompatibility complex. Anim. Genet. 1992, 23:392.
4. Buitkamp J., Filmether P., Stear M.J., Epplen J.T. Class I and class II major histocompatibility complex alleles are associated with faecal egg counts following natural, predominantly Ostertagia circumcincta infection. Parasitol. Res. 1996, 82:693-696.
5. Coltman D.W., Wilson K., Pilkington J.G., Stear M.J., Pemberton J.M. A microsatellite polymorphism in the gamma interferon gene is associated with resistance to gastrointestinal nematodes in a naturally-parasitized population of Soay sheep. Parasitology 2001, 122:571-582.
6. Cordell H.J. Estimation and testing of genotype and haplotype effects in case-control studies: comparison of weighted regression and multiple imputation procedures. Genet. Epidemiol. 2006, 30:259-275.
7. Daly A.K., Day C.P. Candidate gene case-control association studies: advantages and potential pitfalls. Br. J. Clin. Pharmacol. 2001, 52:489-499.
8. Dukkipati V.S.R., Blair H.T., Garrick D.J., Murray A. 'Ovar-Mhc' - Ovine major histocompatibility complex: role in genetic resistance to diseases. N. Z. Vet. J. 2006, 54:153-160.
9. Dukkipati V.S., Blair H.T., Garrick D.J., Lopez-Villalobos N., Whittington R.J., Reddacliff L.A., Eppleston J., Windsor P., Murray A. Association of microsatellite polymorphisms with immune responses to a killed Mycobacterium avium subsp. paratuberculosis vaccine in Merino sheep. N. Z. Vet. J. 2010, 58:237-245.
10. Gao J., Liu K., Liu H., Blair H.T., Li G., Chen C., Tan P., Ma R.Z. A complete DNA sequence map of the ovine major histocompatibility complex. BMC Genomics 2010, 11:466.
11. Griffiths D.J., Martineau H.M., Cousens C. Pathology and pathogenesis of ovine pulmonary adenocarcinoma. J. Comp. Pathol. 2010, 142:260-283.
12. Groth D.M., Wetherall J.D. Dinucleotide repeat polymorphism within the ovine major histocompatibility complex class I region. Anim. Genet. 1994, 25:61.
13. Herrmann-Hoesing L.M., White S.N., Mousel M.R., Lewis G.S., Knowles D.P. Ovine progressive pneumonia provirus levels associate with breed and Ovar-DRB1. Immunogenetics 2008, 60:749-758.
14. Larruskain A., Minguijon E., Garcia-Etxebarria K., Moreno B., Arostegui I., Juste R.A., Jugo B.M. MHC class II DRB1 gene polymorphism in the pathogenesis of Maedi-Visna and pulmonary adenocarcinoma viral diseases in sheep. Immunogenetics 2010, 62:75-83.
15. Lawson Handley L.J., Byrne K., Santucci F., Townsend S., Taylor M., Bruford M.W., Hewitt G.M. Genetic structure of European sheep breeds. Heredity 2007, 99:620-631.
16. Leroux C., Girard N., Cottin V., Greenland T., Mornex J.F., Archer F. Jaagsiekte sheep retrovirus (JSRV): from virus to lung cancer in sheep. Vet. Res. 2007, 38:211-228.
17. Mensah F.K., Gilthorpe M.S., Davies C.F., Keen L.J., Adamson P.J., Roman E., Morgan G.J., Bidwell J.L., Law G.R. Haplotype uncertainty in association studies. Genet. Epidemiol. 2007, 31:348-357.
18. Nagaoka Y., Kabeya H., Onuma M., Kasai N., Okada K., Aida Y. Ovine MHC class II DRB1 alleles associated with resistance or susceptibility to development of bovine leukemia virus-induced ovine lymphoma. Cancer Res. 1999, 59:975-981.
19. Ottenhoff T.H., Verreck F.A., Lichtenauer-Kaligis E.G., Hoeve M.A., Sanal O., van Dissel J.T. Genetics, cytokines and human infectious disease: lessons from weakly pathogenic mycobacteria and salmonellae. Nat. Genet. 2002, 32:97-105.
20. Paterson S. Evidence for balancing selection at the major histocompatibility complex in a free-living ruminant. J. Hered. 1998, 89:289-294.
21. Paterson K.A., Crawford A.M. Ovine microsatellite OarKP6 isolated from a BAC containing the ovine interferon gamma gene. Anim. Genet. 2000, 31:343.
22. Penedo M.C., Bontrop R.E., Heijmans C.M., Otting N., Noort R., Rouweler A.J., de G.N., de Groot N.G., Ward T., Doxiadis G.G. Microsatellite typing of the rhesus macaque MHC region. Immunogenetics 2005, 57:198-209.
23. Raymond M., Rousset F. Genepop (Version-1.2)-population-genetics software for exact tests and ecumenicism. J. Hered. 1995, 86:248-249.
24. Rosenberg N. New transformation tricks from a barnyard retrovirus: implications for human lung cancer. Proc. Natl. Acad. Sci. U. S. A. 2001, 98:4285-4287.
25. Schmidt P., Kühn C., Kang'a S., Hanotte O., Vanselow J., Anton I., Langner C., Schwerin M. Interleukin-12 p35 encoding gene of cattle and sheep harbours a polymorphic T stretch in intron 4. Anim. Genet. 2000, 31:283-285.
26. Schmidt P., Kuhn C., Maillard J.C., Pitra C., Tiemann U., Weikard R., Schwerin M. A comprehensive survey for polymorphisms in the bovine IFN-gamma gene reveals a highly polymorphic intronic DNA sequence allowing improved genotyping of Bovinae. J. Interferon Cytokine Res. 2002, 22:923-934.
27. Shtrichman R., Samuel C.E. The role of gamma interferon in antimicrobial immunity. Curr. Opin. Microbiol. 2001, 4:251-259.
28. Silverman E.K. Haplotype thinking in lung disease. Proc. Am. Thorac. Soc. 2007, 4:4-8.
29. Stear M.J., Fitton L., Innocent G.T., Murphy L., Rennie K., Matthews L. The dynamic influence of genetic variation on the susceptibility of sheep to gastrointestinal nematode infection. J. R. Soc. Interface 2007, 4:767-776.
30. Stephens M., Donnelly P. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet. 2003, 73:1162-1169.
31. Thormar H. Maedi-visna virus and its relationship to human immunodeficiency virus. AIDS Rev. 2005, 7:233-245.
32. Usui T., Konnai S., Ohashi K., Onuma M. Interferon-gamma expression associated with suppression of bovine leukemia virus at the early phase of infection in sheep. Vet. Immunol. Immunopathol. 2007, 115:17-23.
33. Van Oosterhout C., Hutchinson W.F., Wills D.P.M., Shipley P. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 2004, 4:535-538.
34. Vormfelde S.V., Brockmoller J. On the value of haplotype-based genotype-phenotype analysis and on data transformation in pharmacogenetics and -genomics. Nat. Rev. Genet. 2007, 8:12.
35. Wang J., Tang S., Shen H. Association of genetic polymorphisms in the IL12-IFNG pathway with susceptibility to and prognosis of pulmonary tuberculosis in a Chinese population. Eur. J. Clin. Microbiol. Infect. Dis. 2010, 29:1291-1295.
36. Worley K., Carey J., Veitch A., Coltman D.W. Detecting the signature of selection on immune genes in highly structured populations of wild sheep (Ovis dalli). Mol. Ecol. 2006, 15:623-637.
37. Zhou H., Hickford J.G., Fang Q. Polymorphism report: Allelic polymorphism of the ovine interferon gamma (IFNG) gene. Mol. Cell. Probes. 2007, 21:76-77.