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Volumn 45, Issue 1, 2012, Pages 141-155

Enabling semantic similarity estimation across multiple ontologies: An evaluation in the biomedical domain

Author keywords

MeSH; Multiple ontologies; Semantic similarity; WordNet

Indexed keywords

BIOMEDICAL DOMAIN; HETEROGENEOUS KNOWLEDGE; MATCHINGS; MESH; ONTOLOGY-BASED; SEMANTIC SIMILARITY; SIMILARITY ASSESSMENT; SIMILARITY ESTIMATION; WORDNET;

EID: 84856369120     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2011.10.005     Document Type: Article
Times cited : (41)

References (59)
  • 1
    • 80051567189 scopus 로고    scopus 로고
    • Computation of semantic similarity among cross ontological concepts for biomedical domain
    • Saruladha K., Aghila G., Bhuvaneswary A. Computation of semantic similarity among cross ontological concepts for biomedical domain. J Comput 2010, 2:111-118.
    • (2010) J Comput , vol.2 , pp. 111-118
    • Saruladha, K.1    Aghila, G.2    Bhuvaneswary, A.3
  • 2
    • 35348903881 scopus 로고    scopus 로고
    • WebSim: a Web-based semantic similarity measure
    • 21st Annual conference of the Japanese society for artificial intelligence, JSAI 2007, Miyazaki, Japan,
    • Bollegala D, Matsuo Y, Ishizuka M. WebSim: a Web-based semantic similarity measure. In: 21st Annual conference of the Japanese society for artificial intelligence, JSAI 2007, Miyazaki, Japan, 2007. p. 757-66.
    • (2007) , pp. 757-66
    • Bollegala, D.1    Matsuo, Y.2    Ishizuka, M.3
  • 6
    • 77949915975 scopus 로고    scopus 로고
    • Using ontologies for structuring organizational knowledge in Home Care assistance
    • Valls A., Gibert K., Sánchez D., Batet M. Using ontologies for structuring organizational knowledge in Home Care assistance. Int J Med Inform 2010, 79:370-387.
    • (2010) Int J Med Inform , vol.79 , pp. 370-387
    • Valls, A.1    Gibert, K.2    Sánchez, D.3    Batet, M.4
  • 8
    • 79952022327 scopus 로고    scopus 로고
    • An ontology-based measure to compute semantic similarity in biomedicine
    • Batet M., Sánchez D., Valls A. An ontology-based measure to compute semantic similarity in biomedicine. J Biomed Inform 2011, 44:118-125.
    • (2011) J Biomed Inform , vol.44 , pp. 118-125
    • Batet, M.1    Sánchez, D.2    Valls, A.3
  • 9
    • 34248172904 scopus 로고    scopus 로고
    • Measures of semantic similarity and relatedness in the biomedical domain
    • Pedersen T., Pakhomov S., Patwardhan S., Chute C. Measures of semantic similarity and relatedness in the biomedical domain. J Biomed Inform 2007, 40:288-299.
    • (2007) J Biomed Inform , vol.40 , pp. 288-299
    • Pedersen, T.1    Pakhomov, S.2    Patwardhan, S.3    Chute, C.4
  • 10
    • 67649277492 scopus 로고    scopus 로고
    • Measuring semantic similarity between biomedical concepts within multiple ontologies
    • Al-Mubaid H., Nguyen A. Measuring semantic similarity between biomedical concepts within multiple ontologies. IEEE Trans Syst Man Cybern Part C Appl Rev 2009, 39:389-398.
    • (2009) IEEE Trans Syst Man Cybern Part C Appl Rev , vol.39 , pp. 389-398
    • Al-Mubaid, H.1    Nguyen, A.2
  • 11
    • 0037339910 scopus 로고    scopus 로고
    • Determining semantic similarity among entity classes from different ontologies
    • Rodríguez M.A., Egenhofer M.J. Determining semantic similarity among entity classes from different ontologies. IEEE Trans Knowl Data Eng 2003, 15:442-456.
    • (2003) IEEE Trans Knowl Data Eng , vol.15 , pp. 442-456
    • Rodríguez, M.A.1    Egenhofer, M.J.2
  • 12
    • 71749089179 scopus 로고    scopus 로고
    • A semantic similarity metric combining features and intrinsic information content
    • Pirró G. A semantic similarity metric combining features and intrinsic information content. Data Knowl Eng 2009, 68:1289-1308.
    • (2009) Data Knowl Eng , vol.68 , pp. 1289-1308
    • Pirró, G.1
  • 13
    • 33845952568 scopus 로고    scopus 로고
    • X-similarity: computing semantic similarity between concepts from different ontologies
    • Petrakis E.G.M., Varelas G., Hliaoutakis A., Raftopoulou P. X-similarity: computing semantic similarity between concepts from different ontologies. J Digit Inform Manage 2006, 4:233-237.
    • (2006) J Digit Inform Manage , vol.4 , pp. 233-237
    • Petrakis, E.G.M.1    Varelas, G.2    Hliaoutakis, A.3    Raftopoulou, P.4
  • 14
    • 0003033112 scopus 로고
    • Using information content to evaluate semantic similarity in a taxonomy
    • Morgan Kaufmann Publishers Inc., Montreal, Quebec, Canada, C.S. Mellish (Ed.)
    • Resnik P. Using information content to evaluate semantic similarity in a taxonomy. 14th International joint conference on artificial intelligence, IJCAI 1995 1995, 448-453. Morgan Kaufmann Publishers Inc., Montreal, Quebec, Canada. C.S. Mellish (Ed.).
    • (1995) 14th International joint conference on artificial intelligence, IJCAI 1995 , pp. 448-453
    • Resnik, P.1
  • 15
    • 85087282802 scopus 로고    scopus 로고
    • Semantic similarity based on corpus statistics and lexical taxonomy
    • International conference on research in computational linguistics, ROCLING X, Taipei, Taiwan
    • Jiang JJ, Conrath DW. Semantic similarity based on corpus statistics and lexical taxonomy. In: International conference on research in computational linguistics, ROCLING X, Taipei, Taiwan, 1997. p. 19-33.
    • (1997) , pp. 19-33
    • Jiang, J.J.1    Conrath, D.W.2
  • 16
    • 0005180705 scopus 로고    scopus 로고
    • An information-theoretic definition of similarity
    • Morgan Kaufmann, Madison, Wisconsin, USA, J. Shavlik (Ed.)
    • Lin D. An information-theoretic definition of similarity. Fifteenth international conference on machine learning, ICML 1998 1998, 296-304. Morgan Kaufmann, Madison, Wisconsin, USA. J. Shavlik (Ed.).
    • (1998) Fifteenth international conference on machine learning, ICML 1998 , pp. 296-304
    • Lin, D.1
  • 17
    • 78650843216 scopus 로고    scopus 로고
    • Ontology-based information content computation
    • Sánchez D., Batet M., Isern D. Ontology-based information content computation. Knowl Based Syst 2011, 24:297-303.
    • (2011) Knowl Based Syst , vol.24 , pp. 297-303
    • Sánchez, D.1    Batet, M.2    Isern, D.3
  • 18
    • 80052905504 scopus 로고    scopus 로고
    • Semantic similarity estimation in the biomedical domain: an ontology-based information-theoretic perspective
    • Sánchez D., Batet M. Semantic similarity estimation in the biomedical domain: an ontology-based information-theoretic perspective. J Biomed Inform 2011, 44:749-759.
    • (2011) J Biomed Inform , vol.44 , pp. 749-759
    • Sánchez, D.1    Batet, M.2
  • 19
    • 58149411184 scopus 로고
    • Features of similarity
    • Tversky A. Features of similarity. Psycol Rev 1977, 84:327-352.
    • (1977) Psycol Rev , vol.84 , pp. 327-352
    • Tversky, A.1
  • 20
    • 14744278693 scopus 로고    scopus 로고
    • Swoogle: a search and metadata engine for the semantic Web
    • 13th ACM international conference on information and knowledge management, CIKM 2004, ACM Press, Washington, DC, USA,
    • Ding L, Finin T, Joshi A, Pan R, Cost RS, Peng Y et al. Swoogle: a search and metadata engine for the semantic Web. In: 13th ACM international conference on information and knowledge management, CIKM 2004, ACM Press, Washington, DC, USA, 2004. p. 652-9.
    • (2004) , pp. 652-9
    • Ding, L.1    Finin, T.2    Joshi, A.3    Pan, R.4    Cost, R.S.5    Peng, Y.6
  • 22
    • 85146676791 scopus 로고
    • Verb semantics and lexical selection
    • 32nd Annual meeting of the association for computational linguistics, association for computational linguistics, Las Cruces, New Mexico,
    • Wu Z, Palmer M. Verb semantics and lexical selection. In: 32nd Annual meeting of the association for computational linguistics, association for computational linguistics, Las Cruces, New Mexico, 1994. p. 133-8.
    • (1994) , pp. 133-8
    • Wu, Z.1    Palmer, M.2
  • 24
    • 0003936236 scopus 로고    scopus 로고
    • Semantic aspects of interoperable GIS.
    • PhD thesis. In: W.A.U.a. ITC (Ed.)
    • Bishr Y. Semantic aspects of interoperable GIS. PhD thesis. In: W.A.U.a. ITC (Ed.); 1997.
    • (1997)
    • Bishr, Y.1
  • 25
    • 0001368374 scopus 로고
    • Distribution de la flore alpine dans le bassin des dranses et dans quelques régions voisines
    • Jaccard P. Distribution de la flore alpine dans le bassin des dranses et dans quelques régions voisines. Bulletin de la Société Vaudoise de Sciences Naturelles 1901, 34:241-272.
    • (1901) Bulletin de la Société Vaudoise de Sciences Naturelles , vol.34 , pp. 241-272
    • Jaccard, P.1
  • 26
    • 34047150038 scopus 로고    scopus 로고
    • A cluster-based approach for semantic similarity in the biomedical domain
    • 28th Annual international conference of the IEEE engineering in medicine and biology society, EMBS 2006 IEEE Computer Society, New York, USA,
    • Al-Mubaid H, Nguyen HA. A cluster-based approach for semantic similarity in the biomedical domain. In: 28th Annual international conference of the IEEE engineering in medicine and biology society, EMBS 2006 IEEE Computer Society, New York, USA, 2006. p. 2713-7.
    • (2006) , pp. 2713-7
    • Al-Mubaid, H.1    Nguyen, H.A.2
  • 28
    • 68749088825 scopus 로고    scopus 로고
    • SECCO: on building semantic links in peer to peer networks. In: Spaccapietra S (Ed.), J Data Semantics XII. Berlin/Heidelberg: Springer;
    • Pirrò G, Ruffolo M, Talia D. SECCO: on building semantic links in peer to peer networks. In: Spaccapietra S (Ed.), J Data Semantics XII. Berlin/Heidelberg: Springer; 2009. p. 1-36.
    • (2009) , pp. 1-36
    • Pirrò, G.1    Ruffolo, M.2    Talia, D.3
  • 29
    • 55549117355 scopus 로고    scopus 로고
    • Words and concepts in time: towards diachronic cognitive onomasiology
    • Mouton de Gruyter, Berlin, Germany, R. Eckardt, K. von Heusinger, C. Schwarze (Eds.)
    • Blank A. Words and concepts in time: towards diachronic cognitive onomasiology. Words and concepts in time: towards diachronic cognitive onomasiology 2003, 37-66. Mouton de Gruyter, Berlin, Germany. R. Eckardt, K. von Heusinger, C. Schwarze (Eds.).
    • (2003) Words and concepts in time: towards diachronic cognitive onomasiology , pp. 37-66
    • Blank, A.1
  • 30
    • 85007711844 scopus 로고
    • Zoogeographic studies on the solenoid fishes found in Japan and its neighbouring regions
    • Ochiai A. Zoogeographic studies on the solenoid fishes found in Japan and its neighbouring regions. Bull Jpn Soc Fish Sci 1957, 22:526-530.
    • (1957) Bull Jpn Soc Fish Sci , vol.22 , pp. 526-530
    • Ochiai, A.1
  • 31
    • 0001030029 scopus 로고
    • Notes on the measurement of faunal resemblance
    • Simpson G.G. Notes on the measurement of faunal resemblance. Am J Sci 1960, 258-A:300-311.
    • (1960) Am J Sci , pp. 300-311
    • Simpson, G.G.1
  • 32
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice L.R. Measures of the amount of ecologic association between species. Ecology 1945, 26:297-302.
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 34
    • 64849091214 scopus 로고    scopus 로고
    • Approximate graph edit distance computation by means of bipartite graph matching
    • Riesen K., Bunke H. Approximate graph edit distance computation by means of bipartite graph matching. Image Vis Comput 2009, 27:950-959.
    • (2009) Image Vis Comput , vol.27 , pp. 950-959
    • Riesen, K.1    Bunke, H.2
  • 35
    • 64849099581 scopus 로고    scopus 로고
    • Graph matching using the interference of discrete-time quantum walks
    • Emms D., Wilson R.C., Hancock E.R. Graph matching using the interference of discrete-time quantum walks. Image Vis Comput 2009, 27:934-949.
    • (2009) Image Vis Comput , vol.27 , pp. 934-949
    • Emms, D.1    Wilson, R.C.2    Hancock, E.R.3
  • 36
    • 34250828071 scopus 로고    scopus 로고
    • A branch and bound algorithm for matching protein structures
    • 8th international conference on adaptive and natural computing algorithms;
    • Konc J, JaneŽič D. A branch and bound algorithm for matching protein structures. In: 8th international conference on adaptive and natural computing algorithms; 2007. p. 399-406.
    • (2007) , pp. 399-406
    • Konc, J.1    Janežič, D.2
  • 37
    • 0036205389 scopus 로고    scopus 로고
    • Similarity flooding: a versatile graph matching algorithm
    • 18th International conference on data engineering;
    • Melnik S, Garcia-Molina H, Rahm E. Similarity flooding: a versatile graph matching algorithm. In: 18th International conference on data engineering; 2002. p. 117-28.
    • (2002) , pp. 117-28
    • Melnik, S.1    Garcia-Molina, H.2    Rahm, E.3
  • 38
    • 67349240140 scopus 로고    scopus 로고
    • Inexact matching of ontology graphs using expectation-maximization
    • Doshi P., Kolli R., Thomas C. Inexact matching of ontology graphs using expectation-maximization. J Web Semantics 2009, 7:90-106.
    • (2009) J Web Semantics , vol.7 , pp. 90-106
    • Doshi, P.1    Kolli, R.2    Thomas, C.3
  • 40
    • 84931059008 scopus 로고
    • Contextual correlates of semantic similarity
    • Miller G.A., Charles W.G. Contextual correlates of semantic similarity. Lang Cognitive Process 1991, 6:1-28.
    • (1991) Lang Cognitive Process , vol.6 , pp. 1-28
    • Miller, G.A.1    Charles, W.G.2
  • 41
    • 84863873032 scopus 로고
    • Contextual correlates of synonymy
    • Rubenstein H., Goodenough J. Contextual correlates of synonymy. Commun ACM 1965, 8:627-633.
    • (1965) Commun ACM , vol.8 , pp. 627-633
    • Rubenstein, H.1    Goodenough, J.2
  • 43
    • 67649277492 scopus 로고    scopus 로고
    • Measuring semantic similarity between biomedical concepts within multiple ontologies
    • Al-Mubaid H., Nguyen H.A. Measuring semantic similarity between biomedical concepts within multiple ontologies. IEEE Trans Syst Man Cybern Part C Appl Rev 2009, 39:389-398.
    • (2009) IEEE Trans Syst Man Cybern Part C Appl Rev , vol.39 , pp. 389-398
    • Al-Mubaid, H.1    Nguyen, H.A.2
  • 46
    • 30344440153 scopus 로고    scopus 로고
    • Semantic distance in WordNet: an experimental, application-oriented evaluation of five measures
    • Workshop on WordNet and other lexical resources, second meeting of the North American chapter of the association for computational linguistics, Pittsburgh, USA
    • Budanitsky A, Hirst G. Semantic distance in WordNet: an experimental, application-oriented evaluation of five measures. In: Workshop on WordNet and other lexical resources, second meeting of the North American chapter of the association for computational linguistics, Pittsburgh, USA, 2001. p. 10-5.
    • (2001) , pp. 10-5
    • Budanitsky, A.1    Hirst, G.2
  • 49
    • 79956128897 scopus 로고    scopus 로고
    • Automatic extraction of acronym definitions from the Web
    • Sánchez D., Isern D. Automatic extraction of acronym definitions from the Web. Appl Intell 2011, 34:311-327.
    • (2011) Appl Intell , vol.34 , pp. 311-327
    • Sánchez, D.1    Isern, D.2
  • 50
    • 79955999805 scopus 로고    scopus 로고
    • Content annotation for the semantic Web: an automatic Web-based approach
    • Sánchez D., Isern D., Millán M. Content annotation for the semantic Web: an automatic Web-based approach. Knowl Inf Syst 2010, 27:393-418.
    • (2010) Knowl Inf Syst , vol.27 , pp. 393-418
    • Sánchez, D.1    Isern, D.2    Millán, M.3
  • 51
    • 38649107088 scopus 로고    scopus 로고
    • Learning non-taxonomic relationships from Web documents for domain ontology construction
    • Sánchez D., Moreno A. Learning non-taxonomic relationships from Web documents for domain ontology construction. Data Knowl Eng 2008, 63:600-623.
    • (2008) Data Knowl Eng , vol.63 , pp. 600-623
    • Sánchez, D.1    Moreno, A.2
  • 52
    • 77951142171 scopus 로고    scopus 로고
    • A methodology to learn ontological attributes from the Web
    • Sánchez D. A methodology to learn ontological attributes from the Web. Data Knowl Eng 2010, 69:573-597.
    • (2010) Data Knowl Eng , vol.69 , pp. 573-597
    • Sánchez, D.1
  • 53
    • 40549141816 scopus 로고    scopus 로고
    • Pattern-based automatic taxonomy learning from the Web
    • Sánchez D., Moreno A. Pattern-based automatic taxonomy learning from the Web. AI Commun 2008, 21:27-48.
    • (2008) AI Commun , vol.21 , pp. 27-48
    • Sánchez, D.1    Moreno, A.2
  • 54
    • 2342596419 scopus 로고    scopus 로고
    • Towards the development of a conceptual distance metric for the UMLS
    • Caviedes J.E., Cimino J.J. Towards the development of a conceptual distance metric for the UMLS. J Biomed Inform 2004, 37:77-85.
    • (2004) J Biomed Inform , vol.37 , pp. 77-85
    • Caviedes, J.E.1    Cimino, J.J.2
  • 55
    • 62849086564 scopus 로고    scopus 로고
    • Multilingual chief complaint classification for syndromic surveillance: an experiment with Chinese chief complaints
    • Lu H.-M., Chen H., Zeng D., King C.-C., Shih F.-Y., Wu T.-S., et al. Multilingual chief complaint classification for syndromic surveillance: an experiment with Chinese chief complaints. Int J Med Inform 2009, 78:308-320.
    • (2009) Int J Med Inform , vol.78 , pp. 308-320
    • Lu, H.-M.1    Chen, H.2    Zeng, D.3    King, C.-C.4    Shih, F.-Y.5    Wu, T.-S.6
  • 56
    • 74649084637 scopus 로고    scopus 로고
    • SoFoCles: feature filtering for microarray classification based on gene ontology
    • Papachristoudis G., Diplaris S., Mitkas P.A. SoFoCles: feature filtering for microarray classification based on gene ontology. J Biomed Inform 2010, 43:1-14.
    • (2010) J Biomed Inform , vol.43 , pp. 1-14
    • Papachristoudis, G.1    Diplaris, S.2    Mitkas, P.A.3
  • 57
    • 2242422735 scopus 로고    scopus 로고
    • Terminology-driven literature mining and knowledge acquisition in biomedicine
    • Nenadi G., Mima H., Spasi I., Ananiadou S., Tsujii J.-I. Terminology-driven literature mining and knowledge acquisition in biomedicine. Int J Med Inform 2002, 67:33-48.
    • (2002) Int J Med Inform , vol.67 , pp. 33-48
    • Nenadi, G.1    Mima, H.2    Spasi, I.3    Ananiadou, S.4    Tsujii, J.-I.5
  • 58
    • 0036722396 scopus 로고    scopus 로고
    • Ontologies for conceptual modeling: their creation, use, and management
    • Sugumaran V., Storey V.C. Ontologies for conceptual modeling: their creation, use, and management. Data Knowl Eng 2002, 42:251-271.
    • (2002) Data Knowl Eng , vol.42 , pp. 251-271
    • Sugumaran, V.1    Storey, V.C.2
  • 59
    • 33646049354 scopus 로고    scopus 로고
    • Concept mining for indexing medical literature
    • Bichindaritz I., Akkineni S. Concept mining for indexing medical literature. Eng Appl Artif Intell 2006, 19:411-417.
    • (2006) Eng Appl Artif Intell , vol.19 , pp. 411-417
    • Bichindaritz, I.1    Akkineni, S.2


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