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Volumn 26, Issue 3, 2011, Pages 273-291

Molecular phylogeny of the family bacillariaceae based on 18s rdna sequences: Focus on freshwater nitzschia of the section lanceolatae

Author keywords

18S rDNA; Morphology; Nitzschia; Phylogeny

Indexed keywords

ALGORITHM; DIATOM; FRESHWATER ECOSYSTEM; MAXIMUM LIKELIHOOD ANALYSIS; MOLECULAR ANALYSIS; MORPHOLOGY; PHYLOGENETICS; PHYLOGENY;

EID: 84856349485     PISSN: 0269249X     EISSN: 21598347     Source Type: Journal    
DOI: 10.1080/0269249X.2011.597988     Document Type: Article
Times cited : (49)

References (48)
  • 1
    • 79952835722 scopus 로고    scopus 로고
    • Qualité de l'eau–Détermination de l'indice biologique diatomées (IBD)
    • NF T90-354
    • Association Française de Normalisation. 2007. Qualité de l'eau–Détermination de l'indice biologique diatomées (IBD). Afnor,:1–79. NF T90-354
    • (2007) Afnor , pp. 1-79
  • 2
    • 37749039777 scopus 로고    scopus 로고
    • Molecular assessment of phylogenetic relationships in selected species/genera in the naviculoid diatoms (Bacillariophyta). I. The genus
    • Bruder, K., and Medlin, L. K., 2007. Molecular assessment of phylogenetic relationships in selected species/genera in the naviculoid diatoms (Bacillariophyta). I. The genus. Placoneis. Nova Hedwigia, 85:331–352.
    • (2007) Placoneis. Nova Hedwigia , vol.85 , pp. 331-352
    • Bruder, K.1    Medlin, L.K.2
  • 3
    • 57049119590 scopus 로고    scopus 로고
    • Morphological and molecular investigations of naviculoid diatoms. II. Selected genera and families
    • Bruder, K., and Medlin, L. K., 2008a. Morphological and molecular investigations of naviculoid diatoms. II. Selected genera and families. Diatom Research, 23:283–329.
    • (2008) Diatom Research , vol.23 , pp. 283-329
    • Bruder, K.1    Medlin, L.K.2
  • 4
    • 57049096453 scopus 로고    scopus 로고
    • Morphological and molecular investigations of naviculoid diatoms. III. Hippodonta and Navicula S.S
    • Bruder, K., and Medlin, L. K., 2008b. Morphological and molecular investigations of naviculoid diatoms. III. Hippodonta and Navicula S.S. Diatom Research, 23:331–347.
    • (2008) Diatom Research , vol.23 , pp. 331-347
    • Bruder, K.1    Medlin, L.K.2
  • 5
    • 38049009144 scopus 로고    scopus 로고
    • Additional data on the diatom genus Karayevia and a proposal to reject the genus Kolbesia
    • Bukhtiyarova, L. N., 2006. Additional data on the diatom genus Karayevia and a proposal to reject the genus Kolbesia. Microalgal Biology Evolution and Ecology, 130:85–96.
    • (2006) Microalgal Biology Evolution and Ecology , vol.130 , pp. 85-96
    • Bukhtiyarova, L.N.1
  • 6
    • 84856357728 scopus 로고
    • Observations on the diatom genus Donkinia Ralfs in Pritchard. III. Taxonomy
    • Cox, E. J., 1983. Observations on the diatom genus Donkinia Ralfs in Pritchard. III. Taxonomy. Botanica Marina, 26:567–580.
    • (1983) Botanica Marina , vol.26 , pp. 567-580
    • Cox, E.J.1
  • 7
    • 0031785287 scopus 로고    scopus 로고
    • Observations on two taxa of the section Nitzschiae Lanceolatae (Bacillariophyceae): Nitzschia blankaartensis sp. nov. and N. bulnheimiana
    • Denys, L., and Lange-Bertalot, H., 1998. Observations on two taxa of the section Nitzschiae Lanceolatae (Bacillariophyceae):Nitzschia blankaartensis sp. nov. and N. bulnheimiana. Nova Hedwigia, 67:247–258.
    • (1998) Nova Hedwigia , vol.67 , pp. 247-258
    • Denys, L.1    Lange-Bertalot, H.2
  • 9
    • 33746033538 scopus 로고    scopus 로고
    • Using bioindicators to assess rivers in Europe: An overview
    • Lek S., Scardi M., Verdonschot P.F.M., Descy J.P., Park Y.S., (eds), Berlin: Springer
    • Ector, L., and Rimet, F., 2005. “ Using bioindicators to assess rivers in Europe:an overview ”. In Modelling community structure in freshwater ecosystems, Edited by:Lek, S., Scardi, M., Verdonschot, P. F.M., Descy, J. P., and Park, Y. S., 7–19. Berlin:Springer.
    • (2005) Modelling community structure in freshwater ecosystems , pp. 7-19
    • Ector, L.1    Rimet, F.2
  • 10
    • 0021970492 scopus 로고
    • The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytrichia nova and Stylonychia pustulata
    • Elwood, H. J., Olsen, G. J., and Sogin, M. L., 1985. The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytrichia nova and Stylonychia pustulata. Molecular Biology and Evolution, 2:399–410.
    • (1985) Molecular Biology and Evolution , vol.2 , pp. 399-410
    • Elwood, H.J.1    Olsen, G.J.2    Sogin, M.L.3
  • 11
    • 34347259205 scopus 로고    scopus 로고
    • An assessment of potential diatom ‘barcode’ genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta)
    • Evans, K. M., Wortley, A. H., and Mann, D. G., 2007. An assessment of potential diatom ‘barcode’ genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta). Protist, 158:349–364.
    • (2007) Protist , vol.158 , pp. 349-364
    • Evans, K.M.1    Wortley, A.H.2    Mann, D.G.3
  • 12
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    • Gascuel, O., 1997. BIONJ:an improved version of the NJ algorithm based on a simple model of sequence data. Molecular Biology and Evolution, 14:685–695.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 14
    • 0028312441 scopus 로고
    • Pseudo-nitzschia as a genus distinct from Nitzschia (Bacillariophyceae)
    • Hasle, G. R., 1994. Pseudo-nitzschia as a genus distinct from Nitzschia (Bacillariophyceae). Journal of Phycology, 30:1036–1039.
    • (1994) Journal of Phycology , vol.30 , pp. 1036-1039
    • Hasle, G.R.1
  • 15
    • 66749183511 scopus 로고    scopus 로고
    • Nitzschia alicae sp. nov. and N. puriformis sp. nov., new diatoms from European rivers and comparison with the type material of N. sublinearis and N. pura
    • Hlúbiková, D., Blanco, S., Falasco, E., Gomà, J., Hoffmann, L., and Ector, L., 2009. Nitzschia alicae sp. nov. and N. puriformis sp. nov., new diatoms from European rivers and comparison with the type material of N. sublinearis and N. pura. Journal of Phycology, 45:742–760.
    • (2009) Journal of Phycology , vol.45 , pp. 742-760
    • Hlúbiková, D.1    Blanco, S.2    Falasco, E.3    Gomà, J.4    Hoffmann, L.5    Ector, L.6
  • 17
    • 57049097160 scopus 로고
    • Ultrastructural differences in certain taxonomically difficult species of Nitzschia section Lanceolatae in Japan
    • Hara H., (ed), Tokyo: Akademia
    • Kobayasi, H., 1985. “ Ultrastructural differences in certain taxonomically difficult species of Nitzschia section Lanceolatae in Japan ”. In Origin and evolution of diversity in plants and plant community, Edited by:Hara, H., 304–313. Tokyo:Akademia.
    • (1985) Origin and evolution of diversity in plants and plant community , pp. 304-313
    • Kobayasi, H.1
  • 18
    • 0001222271 scopus 로고
    • Bacillariophyceae 1. Teil: Naviculaceae
    • Ettl H., Gerloff J., Heynig H., Mollenhauer D., (eds), Stuttgart/New York: Gustav Fisher Verlag
    • Krammer, K., and Lange-Bertalot, H., 1986. “ Bacillariophyceae 1. Teil:Naviculaceae ”. In Süßwasserflora von Mitteleuropa, Edited by:Ettl, H., Gerloff, J., Heynig, H., and Mollenhauer, D., Vol. 2/1, 876Stuttgart/New York:Gustav Fisher Verlag.
    • (1986) Süßwasserflora von Mitteleuropa , vol.2-1 , pp. 876
    • Krammer, K.1    Lange-Bertalot, H.2
  • 19
    • 0001994074 scopus 로고
    • Bacillariophyceae 3. Teil: Centrales, Fragilariaceae, Eunotiaceae
    • Ettl H., Gerloff J., Heynig H., Mollenhauer D., (eds), Stuttgart: Gustav Fisher Verlag
    • Krammer, K., and Lange-Bertalot, H., 1991a. “ Bacillariophyceae 3. Teil:Centrales, Fragilariaceae, Eunotiaceae ”. In Süßwasserflora von Mitteleuropa, Edited by:Ettl, H., Gerloff, J., Heynig, H., and Mollenhauer, D., Vol. 2/3, 576Stuttgart:Gustav Fisher Verlag.
    • (1991) Süßwasserflora von Mitteleuropa , vol.2-3 , pp. 576
    • Krammer, K.1    Lange-Bertalot, H.2
  • 20
    • 0001222275 scopus 로고
    • Bacillariophyceae 4. Teil: Achnanthaceae. Kritische Ergänzungen zu Navicula (Lineolatae) und Gomphonema. Gesamtliteraturverzeichnis Teil 1–4
    • Ettl H., Gartner G., Gerloff J., Heynig H., Mollenhauer D., (eds), Stuttgart: Gustav Fisher Verlag
    • Krammer, K., and Lange-Bertalot, H., 1991b. “ Bacillariophyceae 4. Teil:Achnanthaceae. Kritische Ergänzungen zu Navicula (Lineolatae) und Gomphonema. Gesamtliteraturverzeichnis Teil 1–4 ”. In Süßwasserflora von Mitteleuropa, Edited by:Ettl, H., Gartner, G., Gerloff, J., Heynig, H., and Mollenhauer, D., Vol. 2/4, 437Stuttgart:Gustav Fisher Verlag.
    • (1991) Süßwasserflora von Mitteleuropa , vol.2-4 , pp. 437
    • Krammer, K.1    Lange-Bertalot, H.2
  • 21
    • 0001222274 scopus 로고    scopus 로고
    • Bacillariophyceae 2. Teil: Bacillariaceae, Epithemiaceae, Surirellaceae
    • Ettl H., Gerloff J., Heynig H., Mollenhauer D., (eds), Stuttgart: G. Fisher
    • Krammer, K., and Lange-Bertalot, H., 1997. “ Bacillariophyceae 2. Teil:Bacillariaceae, Epithemiaceae, Surirellaceae ”. In Süßwasserflora von Mitteleuropa, Edited by:Ettl, H., Gerloff, J., Heynig, H., and Mollenhauer, D., Vol. 2/2, 611Stuttgart:G. Fisher.
    • (1997) Süßwasserflora von Mitteleuropa , vol.2-2 , pp. 611
    • Krammer, K.1    Lange-Bertalot, H.2
  • 22
    • 0343465053 scopus 로고
    • Eine Revision zur Taxonomie der Nitzschiae lanceolatae Grunow. Die ‘klassischen’ bis 1930 tbeschriebenen Süsswasserarten Europas
    • Lange-Bertalot, H., 1977. Eine Revision zur Taxonomie der Nitzschiae lanceolatae Grunow. Die ‘klassischen’ bis 1930 tbeschriebenen Süsswasserarten Europas. Nova Hedwigia, 28:253–307.
    • (1977) Nova Hedwigia , vol.28 , pp. 253-307
    • Lange-Bertalot, H.1
  • 23
    • 0002195566 scopus 로고
    • New species, combinations and synonyms in the genus Nitzschia
    • Lange-Bertalot, H., 1980. New species, combinations and synonyms in the genus Nitzschia. Bacillaria, 3:41–77.
    • (1980) Bacillaria , vol.3 , pp. 41-77
    • Lange-Bertalot, H.1
  • 25
    • 0036871010 scopus 로고    scopus 로고
    • The marine diatom Pseudo-nitzschia galaxiae sp. nov. (Bacillariophyceae): Morphology and phylogenetic relationships
    • Lundholm, N., and Moestrup, Ø., 2002. The marine diatom Pseudo-nitzschia galaxiae sp. nov. (Bacillariophyceae):morphology and phylogenetic relationships. Phycologia, 41:594–605.
    • (2002) Phycologia , vol.41 , pp. 594-605
    • Lundholm, N.1    Moestrup, Ø.2
  • 26
    • 0036202715 scopus 로고    scopus 로고
    • Phylogeny of the Bacillariaceae with emphasis on the genus Pseudo-nitzschia (Bacillariophyceae) based on partial LSU rDNA
    • Lundholm, N., Daugbjerg, N., and Moestrup, Ø., 2002a. Phylogeny of the Bacillariaceae with emphasis on the genus Pseudo-nitzschia (Bacillariophyceae) based on partial LSU rDNA. European Journal of Phycology, 37:115–134.
    • (2002) European Journal of Phycology , vol.37 , pp. 115-134
    • Lundholm, N.1    Daugbjerg, N.2    Moestrup, Ø.3
  • 27
    • 0036755352 scopus 로고    scopus 로고
    • Morphology, phylogeny and taxonomy of species within the Pseudo-nitzschia americana complex (Bacillariophyceae) with description of two new species, Pseudo-nitzschia brasiliana and Pseudo-nitzschia linea
    • Lundholm, N., Hasle, G. R., Fryxell, G. A., and Hargraves, P. A., 2002b. Morphology, phylogeny and taxonomy of species within the Pseudo-nitzschia americana complex (Bacillariophyceae) with description of two new species, Pseudo-nitzschia brasiliana and Pseudo-nitzschia linea. Phycologia, 41:480–497.
    • (2002) Phycologia , vol.41 , pp. 480-497
    • Lundholm, N.1    Hasle, G.R.2    Fryxell, G.A.3    Hargraves, P.A.4
  • 29
    • 77953633560 scopus 로고    scopus 로고
    • Pursuit of a natural classification of diatoms: An incorrect comparison of published data
    • Medlin, L. K., 2010. Pursuit of a natural classification of diatoms:an incorrect comparison of published data. European Journal of Phycology, 45:155–166.
    • (2010) European Journal of Phycology , vol.45 , pp. 155-166
    • Medlin, L.K.1
  • 30
    • 2542421957 scopus 로고    scopus 로고
    • Evolution of the diatoms: V. Morphological and cytological support for the major clades and a taxonomic revision
    • Medlin, L. K., and Kaczmarska, I., 2004. Evolution of the diatoms:V. Morphological and cytological support for the major clades and a taxonomic revision. Phycologia, 43:245–270.
    • (2004) Phycologia , vol.43 , pp. 245-270
    • Medlin, L.K.1    Kaczmarska, I.2
  • 31
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin, L., Elwood, H. J., Stickel, S., and Sogin, M. L., 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 71:491–499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 32
    • 47249134127 scopus 로고    scopus 로고
    • Molecular evidence confirms sister relationship of Ardissonea, Climacosphenia, and Toxarium within the bipolar centric diatoms (Bacillariophyta, Mediophyceae), and cladistic analyses confirm that extremely elongated shape has arisen twice in the diatoms
    • Medlin, L. K., Sato, S., Mann, D. G., and Kooistra, W. C.H.F., 2008. Molecular evidence confirms sister relationship of Ardissonea, Climacosphenia, and Toxarium within the bipolar centric diatoms (Bacillariophyta, Mediophyceae), and cladistic analyses confirm that extremely elongated shape has arisen twice in the diatoms. Journal of Phycology, 44:1340–1348.
    • (2008) Journal of Phycology , vol.44 , pp. 1340-1348
    • Medlin, L.K.1    Sato, S.2    Mann, D.G.3    Kooistra, W.C.H.F.4
  • 33
    • 0027144898 scopus 로고
    • The evolution of the diatoms (Bacillariophyta). I. Origin of the group and assessment of the monophyly of its major divisions
    • Medlin, L. K., Williams, D. M., and Sims, P. A., 1993. The evolution of the diatoms (Bacillariophyta). I. Origin of the group and assessment of the monophyly of its major divisions. European Journal of Phycology, 28:261–275.
    • (1993) European Journal of Phycology , vol.28 , pp. 261-275
    • Medlin, L.K.1    Williams, D.M.2    Sims, P.A.3
  • 34
    • 0001799076 scopus 로고    scopus 로고
    • Review of the major diatom-based techniques for the quality assessment of the rivers–state of the art in Europe
    • Prygiel J., Whitton B.A., Bukowska J., (eds), Douai: Agence de l'Eau Artois-Picardie
    • Prygiel, J., Coste, M., and Bukowska, J., 1999. “ Review of the major diatom-based techniques for the quality assessment of the rivers–state of the art in Europe ”. In Use of algae for monitoring rivers III, Edited by:Prygiel, J., Whitton, B. A., and Bukowska, J., 224–238. Douai:Agence de l'Eau Artois-Picardie.
    • (1999) Use of algae for monitoring rivers III , pp. 224-238
    • Prygiel, J.1    Coste, M.2    Bukowska, J.3
  • 36
    • 0001829525 scopus 로고
    • Initiation à la systématique des diatomées d'eau douce. Pour l'utilisation pratique d'un indice diatomique générique
    • Rumeau, A., and Coste, M., 1988. Initiation à la systématique des diatomées d'eau douce. Pour l'utilisation pratique d'un indice diatomique générique. Bulletin Français de la Pêche et de la Pisciculture, 309:1–69.
    • (1988) Bulletin Français de la Pêche et de la Pisciculture , vol.309 , pp. 1-69
    • Rumeau, A.1    Coste, M.2
  • 37
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M., 1987. The neighbor-joining method:a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4:406–425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 38
    • 33746412317 scopus 로고    scopus 로고
    • Evolution of the diatoms: Insights from fossil, biological and molecular data
    • Sims, P. A., Mann, D. G., and Medlin, L. K., 2006. Evolution of the diatoms:insights from fossil, biological and molecular data. Phycologia, 45:361–402.
    • (2006) Phycologia , vol.45 , pp. 361-402
    • Sims, P.A.1    Mann, D.G.2    Medlin, L.K.3
  • 39
    • 0029140048 scopus 로고
    • A preliminary phylogeny of diatoms based on 28S ribosomal RNA sequence data
    • Sorhannus, U., Gasse, F., Perasso, R., and Baroin Tourancheau, A., 1995. A preliminary phylogeny of diatoms based on 28S ribosomal RNA sequence data. Phycologia, 34:65–73.
    • (1995) Phycologia , vol.34 , pp. 65-73
    • Sorhannus, U.1    Gasse, F.2    Perasso, R.3    Baroin Tourancheau, A.4
  • 41
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J., 1994. CLUSTAL W:improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22:4673–4680.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 42
    • 66749133431 scopus 로고    scopus 로고
    • Examination of the type material of Nitszchia frustulum, N. palea and N. palea var. debilis
    • Witkowski A., (ed), Bristol: Biopress Limited
    • Trobajo, R., and Cox, E. J., 2006. “ Examination of the type material of Nitszchia frustulum, N. palea and N. palea var. debilis ”. In Proceedings of the eighteenth international diatom symposium, Edited by:Witkowski, A., 431–445. Bristol:Biopress Limited.
    • (2006) Proceedings of the eighteenth international diatom symposium , pp. 431-445
    • Trobajo, R.1    Cox, E.J.2
  • 43
    • 70449560749 scopus 로고    scopus 로고
    • Morphological, genetic and mating diversity within the widespread bioindicator Nitzschia palea (Bacillariophyceae)
    • Trobajo, R., Clavero, E., Chepurnov, V. A., Sabbe, K., Mann, D. G., Ishihara, S., and Cox, E. J., 2009. Morphological, genetic and mating diversity within the widespread bioindicator Nitzschia palea (Bacillariophyceae). Phycologia, 48:443–459.
    • (2009) Phycologia , vol.48 , pp. 443-459
    • Trobajo, R.1    Clavero, E.2    Chepurnov, V.A.3    Sabbe, K.4    Mann, D.G.5    Ishihara, S.6    Cox, E.J.7
  • 44
    • 57049180193 scopus 로고    scopus 로고
    • A new taxon of the section Nitzschiae Lanceolatae Grunow: Nitzschia costei sp. nov. compared to N. fonticola Grunow, N. macedonica Hustedt, N. tropica Hustedt and related species
    • Tudesque, L., Rimet, F., and Ector, L., 2008. A new taxon of the section Nitzschiae Lanceolatae Grunow:Nitzschia costei sp. nov. compared to N. fonticola Grunow, N. macedonica Hustedt, N. tropica Hustedt and related species. Diatom Research, 23:483–501.
    • (2008) Diatom Research , vol.23 , pp. 483-501
    • Tudesque, L.1    Rimet, F.2    Ector, L.3
  • 45
    • 0028588308 scopus 로고
    • A coded checklist and ecological indicator values of freshwater diatoms from The Netherlands
    • Van Dam, H., Mertens, A., and Sinkeldam, J., 1994. A coded checklist and ecological indicator values of freshwater diatoms from The Netherlands. Netherlands Journal of Aquatic Ecology, 28:117–133.
    • (1994) Netherlands Journal of Aquatic Ecology , vol.28 , pp. 117-133
    • Van Dam, H.1    Mertens, A.2    Sinkeldam, J.3
  • 46
    • 0035670049 scopus 로고    scopus 로고
    • Unsupervised pattern recognition for the interpretation of ecological data
    • Walley, W. J., and O'Connor, M. A., 2001. Unsupervised pattern recognition for the interpretation of ecological data. Ecological Modelling, 146:219–230.
    • (2001) Ecological Modelling , vol.146 , pp. 219-230
    • Walley, W.J.1    O'Connor, M.A.2
  • 47
    • 0343004931 scopus 로고
    • Investigations on valve morphology of two Nitzschiae Lanceolatae
    • Round F.E., (ed), Koenigstein: Biopress Ltd., Bristol and Koeltz Scientific Books
    • Wendker, S., and Geissler, U., 1988. “ Investigations on valve morphology of two Nitzschiae Lanceolatae ”. In Proceedings of the ninth international diatom symposium, Edited by:Round, F. E., 469–480. Koenigstein:Biopress Ltd., Bristol and Koeltz Scientific Books.
    • (1988) Proceedings of the ninth international diatom symposium , pp. 469-480
    • Wendker, S.1    Geissler, U.2


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