Plant-pathogen interactions: What microarray tells about it?

Molecular Biotechnology

Volumn 50, Issue 1, 2012, Pages 87-97

  Lodha, T D ^a   Basak, J ^a  

^a VISVA BHARATI UNIVERSITY   (India)

Author keywords

Expression profiling; Microarray; Nonhost resistance; Plant pathogen interaction; Systemic acquired resistance

Indexed keywords

BIOLOGICAL EXPERIMENTS; CROP PLANTS; DEFENCE RESPONSE; DEVELOPMENTAL STAGE; DISEASE RESISTANCE; DNA MICRO-ARRAY; END POINTS; EXPRESSION PROFILING; FUTURE PROSPECTS; GENE DISCOVERY; GLASS SLIDES; HIGH-THROUGHPUT TECHNIQUE; MICROARRAY TECHNOLOGIES; NONHOST RESISTANCE; PLANT DEFENSE RESPONSE; PLANT DISEASE; PLANT-PATHOGEN INTERACTIONS; REGULATORY GENES; REGULATORY PROTEIN; SYSTEMIC ACQUIRED RESISTANCE; TRANSDUCTION PROCESS; UNDERLYING NETWORKS;

BIOCHIPS; CROPS; DEPTH PROFILING; GENE EXPRESSION; MICROARRAYS; OLIGONUCLEOTIDES; PATHOGENS; PLANTS (BOTANY); SIGNAL TRANSDUCTION; TECHNOLOGY;

BIOASSAY;

COMPLEMENTARY DNA;

ARABIDOPSIS; BRASSICA; COMPUTER PROGRAM; CROP; DISEASE RESISTANCE; DNA MICROARRAY; GENE EXPRESSION REGULATION; HOST RESISTANCE; MICROARRAY ANALYSIS; NICOTIANA; NONHUMAN; PLANT DISEASE; PLANT PATHOGEN INTERACTION; PLANT VIRUS; REVIEW; SOYBEAN;

GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENES, BACTERIAL; GENES, FUNGAL; GENES, PLANT; HOST-PATHOGEN INTERACTIONS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANT DISEASES; PLANTS; SIGNAL TRANSDUCTION;

EID: 84856247757     PISSN: 10736085     EISSN: 15590305     Source Type: Journal    
DOI: 10.1007/s12033-011-9418-2     Document Type: Review

References (88)

1. Dodds, P. N., & Rathjen, J. P. (2010). Plant immunity: Towards an integrated view of plant-pathogen interactions. Nature Reviews Genetics, 11, 539-548.
2. De Wit, P. J. (2007). How plants recognize pathogens and defend themselves. Cellular and Molecular Life Sciences, 64, 2726-2732. (Pubitemid 351152262)
3. Gachomo, E. W., Shonukan, O. O., & Kotchoni, S. O. (2003). The molecular initiation and subsequent acquisition of disease resistance in plants. African Journal of Biotechnology, 2, 26-32.
4. Dangl, J. L., & Jones, J. D. G. (2001). Plant pathogens and integrated defense responses to infection. Nature, 411, 826-833. (Pubitemid 32588110)
5. Zipfel, C. (2009). Early molecular events in PAMP-triggered immunity. Current Opinion in Plant Biology, 12, 414-420.
6. Wang, Z., Gerstein, M., & Snyder, M. (2009). RNA-Seq: A revolutionary tool for transcriptomics. Nature Reviews Genetics, 10, 57-63.
7. Libault, M., Farmer, A., Brechenmacher, L., Drnevich, J., Langley, R. J., Bilgin, D. D., et al. (2010). Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection. Plant Physiology, 152, 541-552.
8. Santner, A., & Estelle, M. (2007). The JAZ proteins link jasmonate perception with transcriptional changes. The Plant Cell, 19, 3839-3842. (Pubitemid 351253104)
9. Andrew, F. B., Jinrong, W., & Mark, D. F. (2002). Probing plant-pathogen interaction and downstream defense signaling using DNA microarray. Functional & Integrative Genomics, 2, 259-273. (Pubitemid 41399366)
10. Schena, M., Shalon, D., Davis, R. W., & Brown, P. O. (1995). Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science., 20, 368-371.
11. Tan, K. C., Ipcho, S. V. S., Trengove, R. D., Oliver, R. P., & Solomon, P. S. (2009). Assessing the impact of transcriptomics, proteomics and metabolomics on fungal phytopathology. Molecular Plant Pathology, 10, 703-715.
12. Stoughton, R. B. (2005). Applications of DNA microarrays in biology. Annual Review of Biochemistry, 74, 53-82. (Pubitemid 40995501)
13. Webster, C. G., Wylie, S. J., & Jones, M. G. K. (2004). Diagnosis of plant viral pathogen. Current Science., 86, 1604-1607.
14. Hammond-Kosack, K. E., & Jones, J. D. G. (2000). Responses to plant pathogens. In Biochemistry and molecular biology of plants (pp. 1102-1156). Rockville: American Society of Plant Physiology.
15. Lucas, J. A. (1998). Plant pathology and plant pathogens (p. 8). Oxford: Blackwell Science.
16. Schenk, P. M., Kazan, K., Wilson, L., Anderson, J. P., Richmond, T., Somerville, S. C., et al. (2000). Coordinated plant defense responses in Arabidopsis revealed by microarray analysis. Proceedings of the National Academy of Science, 97, 11655-11660.
17. Schenk, P. M., Choo, J. H., & Wong, C. L. (2009). Microarray analyses to study plant defense and rhizosphere microbe interaction. CAB: Perspective in Agriculture, Veterinary, Science, Nutrition, and Natural Resources., 4, 45-46.
18. Torres, M. A., Jonathan, D. G., & Dangl, J. L. (2006). Reactive oxygen species signaling in response to pathogen. Plant Physiology, 141, 373-378. (Pubitemid 43974530)
19. Vallad, G. E., & Goodman, R. M. (2004). Systemic acquired resistance and induced systemic resistance in conventional agriculture. Crop Science, 44, 1920-1934. (Pubitemid 39484310)
20. Dong, X. (2001). Genetic dissection of systemic acquired resistance. Current Opinion in Plant Biology, 4, 309-314. (Pubitemid 32620713)
21. Glazebrook, J. (2001). Genes controlling expression of defense responses in Arabidopsis-2001 status. Current Opinion in Plant Biology, 4, 301-308. (Pubitemid 32620712)
22. Maleck, K., Levine, A., Euglem, T., Morgan, A., Schmids, J., Lawton, K. A., et al. (2000). The Transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nature Genetics, 26, 403-410.
23. Lebel, E., Heifetz, P., Thorne, L., Uknes, S., Ryals, J., & Ward, E. (1998). Functional analysis of regulatory sequences controlling PR-1 gene expression in Arabidopsis. The Plant Journal, 16, 223-233. (Pubitemid 28541951)
24. Wang, D., Weaver, N. D., Kesarwani, M., & Dong, X. (2005). Induction of protein secretory pathway is required for systemic acquired resistance. Science., 308, 1036-1040. (Pubitemid 40664417)
25. Kinkema, M., Fan, W., & Dong, X. (2000). Nuclear localization of NPR1 is required for activation of PR gene expression. Plant Cell., 12, 2339-2350. (Pubitemid 32106410)
26. Schenk, P. M., Kazan, K., Manners, J. M., Anderson, J. P., Simpson, R. S., Wilson, I. W., et al. (2003). Systemic gene expression In Arabidopsis during an incompatible interaction with Alternaria brassicicola. Plant Physiology, 132, 999-1010. (Pubitemid 36715097)
27. Salzman, R. A., Brady, J. A., Finlayson, S. A., Buchanan, C. D., Summer, E. J., Sun, F., et al. (2005). Transcriptional profiling of sorghum induced by methyl jasmonate, salicylic acid, and aminocyclopropane carboxylic acid reveals cooperative regulation and novel gene responses. Plant Physiology, 138, 352-368. (Pubitemid 43138134)
28. Both, M., Csukai, M., Stumpf, M. P., & Spanu, P. D. (2005). Gene expression profiles of Blumeria graminis indicate dynamic changes to primary metabolism during development of an obligate biotrophic pathogen. Plant Cell, 17, 2107-2122.
29. Both, M., Eckert, S. E., Csukai, M., Muller, E., Dimopoulos, G., & Spanu, P. D. (2005). Transcript profiles of Blumeria graminis development during infection reveal a cluster of genes that are potential virulence determinants. Molecular Plant-Microbe Interactions, 18, 125-133.
30. Thomas, S. W., Rasmussen, S. W., Glaring, M. A., Rouster, J. A., Christiansen, S. K., & Oliver, R. P. (2001). Gene identification in the obligate fungal pathogen Blumeria graminis by expressed sequence tag analysis. Fungal Genetics and Biology, 33, 195-211. (Pubitemid 34229804)
31. Idnurm, A., & Howlett, B. J. (2002). Isocitrate lyase is essential for the pathogenicity of the fungus Leptosphaeria maculans to Canola (Brassica napus). Eukaryotic Cell, 1, 719-724. (Pubitemid 36557731)
32. Solomon, P. S., Lee, R. C., Wilson, T. J. G., & Oliver, R. P. (2004). Pathogenicity of Stagonospora nodorum requires malate synthase. Molecular Microbiology, 53, 1065-1073. (Pubitemid 39120429)
33. Solomon, P. S., Tan, K. C., Sanchez, P., Cooper, R. M., & Oliver, R. P. (2004). The disruption of a Gα subunit sheds new light on the pathogenicity of Stagonospora nodorum on wheat. Molecular Plant-Microbe Interactions, 7, 456-466. (Pubitemid 38522254)
34. Wang, Z. Y., Thornton, C. R., Kershaw, M. J., Li, D. B., & Talbot, N. J. (2003). The glyoxylate cycle is required for temporal regulation of virulence by the plant pathogenic fungus Magnaporthe oryzae. Molecular Microbiology, 47, 1601-1612. (Pubitemid 36363342)
35. Scheideler, M., Schlaich, N. L., Fellenberg, K., Beissbarth, T., Hauser, N. C., Vingron, M., et al. (2002). Monitoring the switch from housekeeping to pathogen defence metabolism in Arabidopsis thaliana using cDNA Arrays. Journal of Biological Chemistry, 277, 10555-10561. (Pubitemid 34968179)
36. Gjetting, T., Hagedorn, P. H., Schweizer, P., Thordal-Christensen, H., Carver, T. L. W., & Lyngkjær, M. F. (2007). Single-cell transcript profiling of barley attacked by the powdery mildew fungus. Molecular Plant-Microbe Interactions, 20, 235-246. (Pubitemid 46281150)
37. Sreenivasulu, N., Altschmied, L., Panitz, R., Hahnel, U., Michalek, W., Weschke, W., et al. (2002). Identification of genes specifically expressed in maternal and filial tissues of barley caryopses: A cDNA array analysis. Molecular Genetics and Genomics, 266, 758-767. (Pubitemid 34045298)
38. Catoni, M., Miozzi, L., Fiorilli, V., Lanfranco, L., & Accotto, G. P. (2009). Comparative analysis of expression profiles in shoots and roots of tomato systemically infected by tomato spotted wilt virus reveals organ-specific transcriptional responses. Molecular Plant-Microbe Interactions, 22, 1504-1513.
39. Zellerhoff, N., Himmelbach, A., Dong, W., Bieri, S., Schaffrath, U., & Schweizer, P. (2010). Nonhost resistance of barley to different fungal pathogens is associated with largely distinct, quantitative transcriptional responses. Plant Physiology, 152, 2053-2066.
40. Zhou, Y. L., Xu, M. R., Zhao, M. F., Xie, X. W., Zhu, L. H., Fu, B. Y., et al. (2010). Genome-wide gene responses in a transgenic rice line carrying the maize resistance gene Rxo1 to the rice bacterial streak pathogen, Xanthomonas oryzae pv. oryzicola. BMC Genomics., 11, 78-88.
41. Senthil, G., Liu, H., Puram, V. G., Clark, A., Stromberg, A., & Goodin, M. M. (2005). Specific and common changes in Nicotiana benthamiana gene expression in response to infection by enveloped viruses. Journal of General Virology, 86, 2615-2625. (Pubitemid 41167610)
42. Aranda, M. A., Escaler, M., Wang, D., & Maule, A. J. (1996). Induction of HSP70 and polyubiquitin expression associated with plant virus replication. Proceedings of the National Academy of Sciences of the United States of America, 93, 15289-15293. (Pubitemid 27009593)
43. Aranda, M., & Maule, A. (1998). Virus-induced host gene shutoff in animals and plants. Virology, 243, 261-267. (Pubitemid 28384142)
44. Whitham, S. A., Quan, S., Chang, H. S., Cooper, B., Estes, B., Zhu, T., et al. (2003). Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants. The Plant Journal, 33, 271-283. (Pubitemid 36178006)
45. Qanungo, K. R., Shaji, D., Mathur, M., & Banerjee, A. K. (2004). Two RNA polymerase complexes from vesicular stomatitis virus-infected cells that carry out transcription and replication of genome RNA. Proceedings of the National Academy of Sciences of the United States of America, 101, 5952-5957. (Pubitemid 38520509)
46. Carr, T., Wang, Y., Huang, Z., Yeakley, J. M., Fan, J. B., & Whitham, S. (2006). Tobamovirus infection is independent of HSP101 mRNA induction and protein expression. Virus Research, 121, 33-41. (Pubitemid 43994210)
47. Chen, W., Provart, N., Glazebrook, J., Katagiri, F., Chang, H. S., Eulgem, T., et al. (2002). Expression profile matrix of Arabidopsis transcription factor genes implies their putative functions in response to environmental stresses. Plant Cell., 14, 559-574. (Pubitemid 34305625)
48. Huang, Z., Yeakley, J. M., Garcia, E. W., Holdridge, J. D., Fan, J. B., & Whitham, S. A. (2005). Salicylic acid-dependent expression of host genes in compatible Arabidopsis-virus interactions. Plant Physiology, 137, 1147-1159. (Pubitemid 43138184)
49. Itaya, A., Matsuda, Y., Gonzales, R. A., Nelson, R. S., & Ding, B. (2002). Potato spindle tuber viroid strains of different pathogenicity induces and suppresses expression of common and unique genes in infected tomato. Molecular Plant-Microbe Interactions, 15, 990-999. (Pubitemid 35211752)
50. Huitema, E., Vleeshouwers, V., Francis, D., & Kamoun, S. (2003). Active defence responses associated with non-host resistance of Arabidopsis thaliana to the oomycete pathogen Phytophthora infestans. Molecular Plant Pathology, 4, 487-500. (Pubitemid 37417866)
51. Tao, Y., Xie, Z., Chen, W., Glazebrook, J., Chang, H., Han, B., et al. (2003). Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell., 15, 317-330. (Pubitemid 36229989)
52. Golem, S., & Culver, J. (2003). Tobacco mosaic virus induced alterations in the gene expression profile of Arabidopsis thaliana. Molecular Plant-Microbe Interactions, 16, 681-688. (Pubitemid 36914670)
53. Zimmerli, L., Stein, M., Lipka, V., Schulze-Lefert, P., & Somerville, S. (2004). Host and non-host pathogens elicit different jasmonate/ethylene responses in Arabidopsis. The Plant Journal, 40, 633-646. (Pubitemid 39623239)
54. Marathe, R., Guan, Z., Anandalakshmi, R., Zhao, H., & DineshKumar, S. (2004). Study of Arabidopsis thaliana resistome in response to cucumber mosaic virus infection using whole genome microarray. Plant Molecular Biology, 55, 501-520. (Pubitemid 40653980)
55. Couldridge, C., Newbury, H. J., Ford-Lloyd, B., Bale, J., & Pritchard, J. (2007). Exploring plant responses to aphid feeding using a full Arabidopsis microarray reveals a small number of genes with significantly altered expression. Bulletin of Entomological Research, 97, 523-532. (Pubitemid 47530761)
56. Kusnierczyk, A., Winge, P., Jørstad, T. S., Troczynska, J., Rossiter, J. T., & Bones, A. M. (2008). Towards global understanding of plant defense against aphids - timing and dynamics of early Arabidopsis defense responses to cabbage aphid (Brevicoryne brassicae) attack. Plant, Cell & Environment, 31, 1097-1115. (Pubitemid 351962194)
57. Babu, M., Griffiths, J. S., Huang, T., & Wang, A. (2008). Altered gene expression changes in Arabidopsis leaf tissues and protoplasts in response to plum pox virus infection. BMC Genomics., 9, 325. (Pubitemid 352025241)
58. Luo, M., Dang, P., Bausher, M., Holbrook, C., Lee, R., Lynch, R., et al. (2005). Identification of transcripts involved in resistance responses to leaf spot disease caused by Cercosporidium personatum in peanut (Arachis hypogaea). Phytopathology, 95, 381-387. (Pubitemid 40398899)
59. Zhao, J., Wang, J., An, L., Doerge, R. W., Chen, Z. J., Grau, C. R., et al. (2007). Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus. Planta., 227, 13-24. (Pubitemid 350222820)
60. Schenk, P. M., Thomas-Hall, S., Nguyen, A. V., Manners, J. M., Kazan, K., & Spangenberg, G. (2008). Identification of plant defense genes in canola using Arabidopsis cDNA microarrays. Plant Biology, 10, 539-547.
61. Moy, P., Qutob, D., Chapman, B., Atkinson, I., & Gijzen, M. (2004). Patterns of gene expression upon infection of soybean plants by Phytophthora sojae. Molecular Plant-Microbe Interactions, 17, 1051-1062. (Pubitemid 39247056)
62. Zou, J., Rodriguez-Zas, S., Li, M. A. M., Zhu, J., Gonzalez, D., Vodkin, L., et al. (2005). Expression profiling soybean response to Pseudomonas syringae reveals new defense-related genes and rapid HR-specific downregulation of photosynthesis. Molecular Plant-Microbe Interactions, 8, 1161-1174. (Pubitemid 41484239)
63. van de Mortel, M., Recknor, J. C., Graham, M. A., Nettleton, D., Dittman, J. D., Nelson, R. T., et al. (2007). Distinct biphasic mRNA changes in response to Asian soybean rust infection. Molecular Plant-Microbe Interactions, 20, 887-999. (Pubitemid 47105722)
64. Babu, M., Gagarinova, A. G., Brandle, J. E., & Wang, A. (2008). Association of the transcriptional response of soybean plants with soybean mosaic virus systemic infection. Journal of General Virology, 89, 1069-1080.
65. Bilgin, D. D., Aldea, M., O'Neill, B. F., Benitez, M., Li, M., Clough, S. J., et al. (2008). Elevated ozone alters soybean-virus interaction. Molecular Plant-Microbe Interactions, 21, 1297-1308.
66. 3 alter resistance of soybean (Glycine max) to Japanese beetles (Popillia japonica). Plant, Cell & Environment, 31, 419-434. (Pubitemid 351388651)
67. Brechenmacher, L., Kim, M.-Y., Benitez, M., Li, M., Joshi, T., Calla, B., et al. (2008). Transcription profiling of soybean nodulation by Bradyrhizobium japonicum. Molecular Plant-Microbe Interactions, 21, 631-645. (Pubitemid 351679742)
68. Li, Y., Zou, J., Li, M., Bilgin, D. D., Vodkin, L. O., Hartman, G. L., et al. (2008). Soybean defense responses to the soybean aphid. New Phytologist, 179, 185-195. (Pubitemid 351783174)
69. Zierold, U., Scholz, U., & Schweizer, P. (2005). Transcriptome analysis of mlo-mediated resistance in the epidermis of barley. Molecular Plant Pathology, 6, 139-151. (Pubitemid 40554780)
70. McGrann, G. R. D., Townsend, B. J., Antoniw, J. F., Asher, M. J. C., & Mutasa-Gottgens, E. S. (2009). Barley elicits a similar early basal defense response during host and non-host interactions with Polymyxa root parasites. European Journal of Plant Pathology, 123, 5-15.
71. Delp, G., Gradin, T., Ahman, I., & Jonsson, L. M. V. (2009). Microarray analysis of the interaction between the aphid Rhopalosiphum padi and host plants reveals both differences and similarities between susceptible and partially resistant barley lines. Mol Genet Genomics., 281, 233-248.
72. Chen, X., Niks, R. E., Hedley, R. E., Morris, J., Druka, A., Marcel, T. C., et al. (2010). Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley. BMC Genomics., 11, 629.
73. Wichmann, F., Asp, T., Widmer, F., & Kolliker, R. (2011). Transcriptional responses of Italian ryegrass during interaction with Xanthomonas translucens pv. graminis reveal novel candidate genes for bacterial wilt resistance. Theoretical and Applied Genetics, 122, 567-579.
74. Zhao, Y., Thilmony, R., Bender, C., Schaller, A., He, S., & Howe, G. (2003). Virulence systems of Pseudomonas syringae pv. tomato promotes bacterial speck disease in tomato by targeting the jasmonate signaling pathway. The Plant Journal, 36, 485-499. (Pubitemid 37457936)
75. Gibly, A., Bonshtien, A., Balaji, V., Debbie, P., Martin, G., & Sessa, G. (2004). Identification and expression profiling of tomato genes differentially regulated during a resistance response to Xanthomonas campestris pv. vesicatoria. Molecular Plant-Microbe Interactions, 17, 1212-1222. (Pubitemid 39428878)
76. Lopez, C., Soto, M., Restrepo, S., Piegu, B., Cooke, R., Delseny, M., et al. (2005). Gene expression profile in response to Xanthomonas axonopodis pv. manihotis infection in cassava using a cDNA microarray. Plant Molecular Biology, 57, 393-410. (Pubitemid 40572920)
77. Schmidt, D. D., Voelckel, C., Hartl, M., Schmidt, S., & Baldwin, I. T. (2005). Specificity in ecological interactions: Attack from the same lepidopteran herbivore results in species-specific transcriptional responses in two solanaceous host plants. Plant Physiology, 138, 1763-1773. (Pubitemid 43142118)
78. Voelckel, C., & Baldwin, I. T. (2004). Herbivore-induced plant vaccination. Part II. Array-studies reveal the transience of herbivorespecific transcriptional imprints and a distinct imprint from stress combinations. The Plant Journal, 38, 650-663. (Pubitemid 38693380)
79. Ralph, S. G., Yueh, H., Friedmann, M., Aeschliman, D., Zeznik, J. A., Nelson, C. C., et al. (2006). Conifer defence against insects: Microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-scale changes of the host transcriptome. Plant, Cell & Environment, 29, 1545-1570. (Pubitemid 44356591)
80. Ralph, S., Oddy, C., Cooper, D., Yueh, H., Jancsik, S., Kolosov, N., et al. (2006). Genomics of hybrid poplar (Populus trichocarpa × deltoides) interacting with forest tent caterpillars (Malacosoma disstria): Normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences in poplar. Molecular Ecology, 15, 1275-1297.
81. Rinaldi, C., Kohler, A., Frey, P., Duchaussoy, F., Ningre, N., Couloux, A., et al. (2007). Transcript profiling of poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina. Plant Physiology, 144, 347-366. (Pubitemid 46941638)
82. Restrepo, S., Myers, K., Pozo, Od., Martin, G., Hart, A., Buell, C., et al. (2005). Gene profiling of a compatible interaction between Phytotphthora infestans and Solanum tuberosum suggests a role for carbonic anhydrase. Molecular Plant-Microbe Interactions, 18, 913-922. (Pubitemid 41170156)
83. Lawrence, S. D., Novak, N. G., Ju, C. J.-T., & Cooke, J. E. K. (2008). Potato, Solanum tuberosum, defense against colorado potato beetle, Leptinotarsa decemlineata (Say): Microarray gene expression profiling of potato by colorado potato beetle regurgitant treatment of wounded leaves. Journal of Chemical Ecology, 34, 1013-1025.
84. NTN elicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation. Molecular Plant Pathology, 10, 263-275.
85. Bruggmann, R., Abderhalden, O., Reymond, P., & Dudler, R. (2005). Analysis of epidermis- and mesophyll-specific transcript accumulation in powdery mildew-inoculated wheat leave. Plant Molecular Biology, 58, 247-267. (Pubitemid 41130748)
86. Figueiredo, A., Fortes, A. M., Ferreira, S., Sebastiana, M., Choi, Y. H., Sousa, L., et al. (2008). Transcriptional and metabolic profiling of grape (Vitis vinifera L.) leaves unravel possible innate resistance against pathogenic fungi. Journal of Experimental Botany, 59, 3371-3381.
87. Brazma, A., Parkinson, H., Sarkans, U., Shojatalab, M., Vilo, J., Abeygunawardena, N., et al. (2003). ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Research, 31, 68-71. (Pubitemid 36150335)
88. Baginsky, S., Hennig, L., Zimmermann, P., & Gruissem, W. (2010). Gene expression analysis, proteomics, and network discovery. Plant Physiology, 152, 402-410.