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Volumn 81 A, Issue 2, 2012, Pages 120-129

An automated analysis of highly complex flow cytometry-based proteomic data

Author keywords

Bioinformatics; Data analysis; Flow cytometry; Protein array

Indexed keywords

BCR ABL PROTEIN; IMATINIB; MICROSPHERE; PIPERAZINE DERIVATIVE; PROTEOME; PYRIMIDINE DERIVATIVE; TUMOR PROTEIN;

EID: 84856223071     PISSN: 15524922     EISSN: 15524930     Source Type: Journal    
DOI: 10.1002/cyto.a.22011     Document Type: Article
Times cited : (13)

References (42)
  • 1
    • 55449095864 scopus 로고    scopus 로고
    • A chromatic explosion: The development and future of multiparameter flow cytometry
    • Chattopadhyay PK, Hogerkorp CM, Roederer M. A chromatic explosion: The development and future of multiparameter flow cytometry. Immunology 2008; 125: 441-449.
    • (2008) Immunology , vol.125 , pp. 441-449
    • Chattopadhyay, P.K.1    Hogerkorp, C.M.2    Roederer, M.3
  • 2
    • 72849117498 scopus 로고    scopus 로고
    • Multiplex microsphere-based flow cytometric platforms for protein analysis and their application in clinical proteomics-From assays to results
    • Hsu HY, Joos TO, Koga H. Multiplex microsphere-based flow cytometric platforms for protein analysis and their application in clinical proteomics-From assays to results. Electrophoresis 2009; 30: 4008-4019.
    • (2009) Electrophoresis , vol.30 , pp. 4008-4019
    • Hsu, H.Y.1    Joos, T.O.2    Koga, H.3
  • 3
    • 77954250303 scopus 로고    scopus 로고
    • Data analysis in flow cytometry: The future just started
    • Lugli E, Roederer M, Cossarizza A. Data analysis in flow cytometry: The future just started. Cytometry A 2010; 77A: 705-713.
    • (2010) Cytometry A , vol.77 , pp. 705-713
    • Lugli, E.1    Roederer, M.2    Cossarizza, A.3
  • 4
    • 71049151682 scopus 로고    scopus 로고
    • Profiling of polychromatic flow cytometry data on B-cells reveals patients' clusters in common variable immunodeficiency
    • Kalina T, Stuchly J, Janda A, Hrusak O, Ruzickova S, Sediva A, Litzman J, Vlkova M. Profiling of polychromatic flow cytometry data on B-cells reveals patients' clusters in common variable immunodeficiency. Cytometry A 2009; 75A: 902-909.
    • (2009) Cytometry A , vol.75 , pp. 902-909
    • Kalina, T.1    Stuchly, J.2    Janda, A.3    Hrusak, O.4    Ruzickova, S.5    Sediva, A.6    Litzman, J.7    Vlkova, M.8
  • 5
    • 33745214264 scopus 로고    scopus 로고
    • A new automated flow cytometry data analysis approach for the diagnostic screening of neoplastic B-cell disorders in peripheral blood samples with absolute lymphocytosis
    • Costa ES, Arroyo ME, Pedreira CE, Garcia-Marcos MA, Tabernero MD, Almeida J, Orfao A. A new automated flow cytometry data analysis approach for the diagnostic screening of neoplastic B-cell disorders in peripheral blood samples with absolute lymphocytosis. Leukemia 2006; 20: 1221-1230.
    • (2006) Leukemia , vol.20 , pp. 1221-1230
    • Costa, E.S.1    Arroyo, M.E.2    Pedreira, C.E.3    Garcia-Marcos, M.A.4    Tabernero, M.D.5    Almeida, J.6    Orfao, A.7
  • 6
    • 78149465908 scopus 로고    scopus 로고
    • Automated pattern-guided principal component analysis vs. expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: A step forward in the standardization of clinical immunophenotyping
    • Costa ES, Pedreira CE, Barrena S, Lecrevisse Q, Flores J, Quijano S, Almeida J, del Carmen Garcia-Macias M, Bottcher S, Van Dongen JJ, et al. Automated pattern-guided principal component analysis vs. expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: A step forward in the standardization of clinical immunophenotyping. Leukemia 2010; 24: 1927-1933.
    • (2010) Leukemia , vol.24 , pp. 1927-1933
    • Costa, E.S.1    Pedreira, C.E.2    Barrena, S.3    Lecrevisse, Q.4    Flores, J.5    Quijano, S.6    Almeida, J.7    del Carmen Garcia-Macias, M.8    Bottcher, S.9    Van Dongen, J.J.10
  • 7
    • 56749104572 scopus 로고    scopus 로고
    • A probabilistic approach for the evaluation of minimal residual disease by multiparameter flow cytometry in leukemic B-cell chronic lymphoproliferative disorders
    • Pedreira CE, Costa ES, Almeida J, Fernandez C, Quijano S, Flores J, Barrena S, Lecrevisse Q, Van Dongen JJ, Orfao A. A probabilistic approach for the evaluation of minimal residual disease by multiparameter flow cytometry in leukemic B-cell chronic lymphoproliferative disorders. Cytometry A 2008; 73A: 1141-1150.
    • (2008) Cytometry A , vol.73 , pp. 1141-1150
    • Pedreira, C.E.1    Costa, E.S.2    Almeida, J.3    Fernandez, C.4    Quijano, S.5    Flores, J.6    Barrena, S.7    Lecrevisse, Q.8    Van Dongen, J.J.9    Orfao, A.10
  • 12
    • 78149469721 scopus 로고    scopus 로고
    • The proximal signaling network of the BCR-ABL1 oncogene shows a modular organization
    • Titz B, Low T, Komisopoulou E, Chen SS, Rubbi L, Graeber TG. The proximal signaling network of the BCR-ABL1 oncogene shows a modular organization. Oncogene 2010; 29: 5895-5910.
    • (2010) Oncogene , vol.29 , pp. 5895-5910
    • Titz, B.1    Low, T.2    Komisopoulou, E.3    Chen, S.S.4    Rubbi, L.5    Graeber, T.G.6
  • 13
    • 78149396772 scopus 로고    scopus 로고
    • Global proteome quantification for discovering imatinib-induced perturbation of multiple biological pathways in K562 human chronic myeloid leukemia cells
    • Xiong L, Zhang J, Yuan B, Dong X, Jiang X, Wang Y. Global proteome quantification for discovering imatinib-induced perturbation of multiple biological pathways in K562 human chronic myeloid leukemia cells. J Proteome Res 2010; 9: 6007-6015.
    • (2010) J Proteome Res , vol.9 , pp. 6007-6015
    • Xiong, L.1    Zhang, J.2    Yuan, B.3    Dong, X.4    Jiang, X.5    Wang, Y.6
  • 14
    • 34447101358 scopus 로고    scopus 로고
    • Antibody arrays-An emerging tool in cancer proteomics
    • Kopf E, Zharhary D. Antibody arrays-An emerging tool in cancer proteomics. Int J Biochem Cell Biol 2007; 39: 1305-17.
    • (2007) Int J Biochem Cell Biol , vol.39 , pp. 1305-1317
    • Kopf, E.1    Zharhary, D.2
  • 17
    • 81855164054 scopus 로고    scopus 로고
    • Antibody-array analysis of labelled proteomes: How should we control specificity?
    • in press) doi:10.1016/j.nbt.2011.07.008.
    • Holm A, Wu W, Lund-Johansen F. Antibody-array analysis of labelled proteomes: How should we control specificity? N Biotechnol 2011, (in press) doi:10.1016/j.nbt.2011.07.008.
    • (2011) N Biotechnol
    • Holm, A.1    Wu, W.2    Lund-Johansen, F.3
  • 18
    • 0036493694 scopus 로고    scopus 로고
    • Leading prognostic relevance of the BCR-ABL translocation in adult acute B-lineage lymphoblastic leukemia: A prospective study of the German Multicenter Trial Group and confirmed polymerase chain reaction analysis
    • Gleissner B, Gokbuget N, Bartram CR, Janssen B, Rieder H, Janssen JW, Fonatsch C, Heyll A, Voliotis D, Beck J, et al. Leading prognostic relevance of the BCR-ABL translocation in adult acute B-lineage lymphoblastic leukemia: A prospective study of the German Multicenter Trial Group and confirmed polymerase chain reaction analysis. Blood 2002; 99: 1536-1543.
    • (2002) Blood , vol.99 , pp. 1536-1543
    • Gleissner, B.1    Gokbuget, N.2    Bartram, C.R.3    Janssen, B.4    Rieder, H.5    Janssen, J.W.6    Fonatsch, C.7    Heyll, A.8    Voliotis, D.9    Beck, J.10
  • 19
    • 0141528828 scopus 로고    scopus 로고
    • Chronic myeloid leukemia-Advances in biology and new approaches to treatment
    • Goldman JM, Melo JV. Chronic myeloid leukemia-Advances in biology and new approaches to treatment. N Engl J Med 2003; 349: 1451-1464.
    • (2003) N Engl J Med , vol.349 , pp. 1451-1464
    • Goldman, J.M.1    Melo, J.V.2
  • 20
    • 0023611356 scopus 로고
    • Clinical and biologic hallmarks of the Philadelphia chromosome in childhood acute lymphoblastic leukemia
    • Ribeiro RC, Abromowitch M, Raimondi SC, Murphy SB, Behm F, Williams DL. Clinical and biologic hallmarks of the Philadelphia chromosome in childhood acute lymphoblastic leukemia. Blood 1987; 70: 948-953.
    • (1987) Blood , vol.70 , pp. 948-953
    • Ribeiro, R.C.1    Abromowitch, M.2    Raimondi, S.C.3    Murphy, S.B.4    Behm, F.5    Williams, D.L.6
  • 21
    • 0032913704 scopus 로고    scopus 로고
    • Leukemia cell lines: In vitro models for the study of Philadelphia chromosome-positive leukemia
    • Drexler HG, MacLeod RA, Uphoff CC. Leukemia cell lines: In vitro models for the study of Philadelphia chromosome-positive leukemia. Leuk Res 1999; 23: 207-215.
    • (1999) Leuk Res , vol.23 , pp. 207-215
    • Drexler, H.G.1    MacLeod, R.A.2    Uphoff, C.C.3
  • 23
    • 77954482764 scopus 로고    scopus 로고
    • Aberrantly expressed CEACAM6 is involved in the signaling leading to apoptosis of acute lymphoblastic leukemia cells
    • e1.
    • Kanderova V, Hrusak O, Kalina T. Aberrantly expressed CEACAM6 is involved in the signaling leading to apoptosis of acute lymphoblastic leukemia cells. Exp Hematol 2010; 38: 653-660 e1.
    • (2010) Exp Hematol , vol.38 , pp. 653-660
    • Kanderova, V.1    Hrusak, O.2    Kalina, T.3
  • 25
    • 0037045589 scopus 로고    scopus 로고
    • Relation between resistance of Philadelphia-chromosome-positive acute lymphoblastic leukaemia to the tyrosine kinase inhibitor STI571 and gene-expression profiles: A gene-expression study
    • Hofmann WK, de Vos S, Elashoff D, Gschaidmeier H, Hoelzer D, Koeffler HP, Ottmann OG. Relation between resistance of Philadelphia-chromosome-positive acute lymphoblastic leukaemia to the tyrosine kinase inhibitor STI571 and gene-expression profiles: A gene-expression study. Lancet 2002; 359: 481-486.
    • (2002) Lancet , vol.359 , pp. 481-486
    • Hofmann, W.K.1    de Vos, S.2    Elashoff, D.3    Gschaidmeier, H.4    Hoelzer, D.5    Koeffler, H.P.6    Ottmann, O.G.7
  • 26
    • 0035800507 scopus 로고    scopus 로고
    • Clinical resistance to STI-571 cancer therapy caused by BCR-ABL gene mutation or amplification
    • Gorre ME, Mohammed M, Ellwood K, Hsu N, Paquette R, Rao PN, Sawyers CL. Clinical resistance to STI-571 cancer therapy caused by BCR-ABL gene mutation or amplification. Science 2001; 293: 876-880.
    • (2001) Science , vol.293 , pp. 876-880
    • Gorre, M.E.1    Mohammed, M.2    Ellwood, K.3    Hsu, N.4    Paquette, R.5    Rao, P.N.6    Sawyers, C.L.7
  • 27
    • 0037045583 scopus 로고    scopus 로고
    • BCR-ABL gene mutations in relation to clinical resistance of Philadelphia-chromosome-positive leukaemia to STI571: A prospective study
    • von Bubnoff N, Schneller F, Peschel C, Duyster J. BCR-ABL gene mutations in relation to clinical resistance of Philadelphia-chromosome-positive leukaemia to STI571: A prospective study. Lancet 2002; 359: 487-491.
    • (2002) Lancet , vol.359 , pp. 487-491
    • von Bubnoff, N.1    Schneller, F.2    Peschel, C.3    Duyster, J.4
  • 30
    • 84856220667 scopus 로고    scopus 로고
    • Matrix: Sparse and Dense Matrix Classes and Methods. Version 0.999375-50.
    • Douglas B, Martin M. Matrix: Sparse and Dense Matrix Classes and Methods. Version 0.999375-50. 2011,
    • (2011)
    • Douglas, B.1    Martin, M.2
  • 31
    • 84889745384 scopus 로고    scopus 로고
    • The igraph software package for complex network research. InterJournal 2006; Complex Systems: 1695.
    • Csardi G, Nepusz T. The igraph software package for complex network research. InterJournal 2006; Complex Systems: 1695.
    • Csardi, G.1    Nepusz, T.2
  • 32
    • 84856230006 scopus 로고    scopus 로고
    • rggobi: Interface Between R and GGobi. R Package Version 2.1.14.
    • Lang DT, Swayne D, Wickham H, Lawrence M. rggobi: Interface Between R and GGobi. R Package Version 2.1.14. 2009,
    • (2009)
    • Lang, D.T.1    Swayne, D.2    Wickham, H.3    Lawrence, M.4
  • 33
    • 37249026668 scopus 로고    scopus 로고
    • Reshaping data with the reshape package
    • Wickham H. Reshaping data with the reshape package. J Stat Software 2007; 21:1-20
    • (2007) J Stat Software , vol.21 , pp. 1-20
    • Wickham, H.1
  • 36
    • 33745787972 scopus 로고    scopus 로고
    • Multiplexed and microparticle-based analyses: Quantitative tools for the large-scale analysis of biological systems
    • Nolan JP, Mandy F. Multiplexed and microparticle-based analyses: Quantitative tools for the large-scale analysis of biological systems. Cytometry A 2006; 69A: 318-325.
    • (2006) Cytometry A , vol.69 , pp. 318-325
    • Nolan, J.P.1    Mandy, F.2
  • 37
    • 74049138270 scopus 로고    scopus 로고
    • Prospects for the automation of analysis and interpretation of flow cytometric data
    • Davey HM. Prospects for the automation of analysis and interpretation of flow cytometric data. Cytometry A 2010; 77A: 3-5.
    • (2010) Cytometry A , vol.77 , pp. 3-5
    • Davey, H.M.1
  • 38
    • 62349137000 scopus 로고    scopus 로고
    • Analysis of clinical flow cytometric immunophenotyping data by clustering on statistical manifolds: Treating flow cytometry data as high-dimensional objects
    • Finn WG, Carter KM, Raich R, Stoolman LM, Hero AO. Analysis of clinical flow cytometric immunophenotyping data by clustering on statistical manifolds: Treating flow cytometry data as high-dimensional objects. Cytometry B Clin Cytom 2008; 76B: 1-7.
    • (2008) Cytometry B Clin Cytom , vol.76 , pp. 1-7
    • Finn, W.G.1    Carter, K.M.2    Raich, R.3    Stoolman, L.M.4    Hero, A.O.5
  • 39
    • 67651042932 scopus 로고    scopus 로고
    • Scalable analysis of flow cytometry data using R/bioconductor
    • Klinke DJII, Brundage KM. Scalable analysis of flow cytometry data using R/bioconductor. Cytometry A 2009; 75A: 699-706.
    • (2009) Cytometry A , vol.75 , pp. 699-706
    • Klinke II, D.J.1    Brundage, K.M.2
  • 41
    • 0035469895 scopus 로고    scopus 로고
    • Adhesion to fibronectin selectively protects Bcr-Abl+ cells from DNA damage-induced apoptosis
    • van der Kuip H, Goetz AW, Miething C, Duyster J, Aulitzky WE. Adhesion to fibronectin selectively protects Bcr-Abl+ cells from DNA damage-induced apoptosis. Blood 2001; 98: 1532-1541.
    • (2001) Blood , vol.98 , pp. 1532-1541
    • van der Kuip, H.1    Goetz, A.W.2    Miething, C.3    Duyster, J.4    Aulitzky, W.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.