-
1
-
-
0036792398
-
The history and future of the fluorescence activated cell sorter and flow cytometry: A view from stanford
-
Herzenberg LA, Parks D, Sahaf B, Perez O, Roederer M, Herzenberg LA. The history and future of the fluorescence activated cell sorter and flow cytometry: A view from stanford. Clin Chem 2002;48:1819-1827.
-
(2002)
Clin Chem
, vol.48
, pp. 1819-1827
-
-
Herzenberg, L.A.1
Parks, D.2
Sahaf, B.3
Perez, O.4
Roederer, M.5
Herzenberg, L.A.6
-
2
-
-
3242683662
-
Single cell profiling of potentiated phospho-protein networks in cancer cells
-
DOI 10.1016/j.cell.2004.06.028, PII S0092867404006282
-
Irish JM, Hovland R, Krutzik PO, Perez OD, Bruserud O, Gjertsen BT, Nolan GP. Single cell profiling of potentiated phospho-protein networks in cancer cells. Cell 2004;118:217-228. (Pubitemid 38962577)
-
(2004)
Cell
, vol.118
, Issue.2
, pp. 217-228
-
-
Irish, J.M.1
Hovland, R.2
Krutzik, P.O.3
Perez, O.D.4
Bruserud, O.5
Gjertsen, B.T.6
Nolan, G.P.7
-
3
-
-
41149096579
-
T-cell quality in memory and protection: Implications for vaccine design
-
Seder RA, Darrah PA, Roederer M. T-cell quality in memory and protection: Implications for vaccine design. Nat Rev Immunol 2008;8:247-258.
-
(2008)
Nat Rev Immunol
, vol.8
, pp. 247-258
-
-
Seder, R.A.1
Darrah, P.A.2
Roederer, M.3
-
4
-
-
35349015916
-
Evaluation of a green laser pointer for flow cytometry
-
DOI 10.1002/cyto.a.20454
-
Habbersett RC, Naivar MA, Woods TA, Goddard GA, Graves SW. Evaluation of a green laser pointer for flow cytometry. Cytometry A 2007;71A:809-817. (Pubitemid 47606737)
-
(2007)
Cytometry Part a
, vol.71
, Issue.10
, pp. 809-817
-
-
Habbersett, R.C.1
Naivar, M.A.2
Woods, T.A.3
Goddard, G.R.4
Graves, S.W.5
-
5
-
-
0034699507
-
A practical approach to multicolor flow cytometry for immunophenotyping
-
DOI 10.1016/S0022-1759(00)00229-5, PII S0022175900002295
-
Baumgarth N, Roederer M. A practical approach to multicolor flow cytometry for immunophenotyping. J Immunol Methods 2000;243:77-97. (Pubitemid 30734595)
-
(2000)
Journal of Immunological Methods
, vol.243
, Issue.1-2
, pp. 77-97
-
-
Baumgarth, N.1
Roederer, M.2
-
6
-
-
27144472931
-
Flow cytometry smaller and better
-
Bonetta L. Flow cytometry smaller and better. Nat Methods 2005;2:785-795.
-
(2005)
Nat Methods
, vol.2
, pp. 785-795
-
-
Bonetta, L.1
-
7
-
-
51449090127
-
Analysis of flow cytometry data using an automatic processing tool
-
Jeffries D, Zaidi I, de Jong B, Holland MJ, Miles DJC. Analysis of flow cytometry data using an automatic processing tool. Cytometry A 2008;73A:857-867.
-
(2008)
Cytometry A
, vol.73 A
, pp. 857-867
-
-
Jeffries, D.1
Zaidi, I.2
De Jong, B.3
Holland, M.J.4
Miles, D.J.C.5
-
8
-
-
20044395674
-
-
January Bioconductor Project Working Papers. Working Paper 1 Accessed 05/24/09
-
Gentleman R, Carey VJ, Bates DJ, Bolstad BM, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Guenther S, Smith C, Smyth GK, Tierney L, Yang YH, Zhang J. Bioconductor: Open software development for computational biology and bioinformatics" (January 2004). Bioconductor Project Working Papers. Working Paper 1. http://www.bepress.com/bioconductor/paper1. Accessed 05/24/09.
-
(2004)
Bioconductor: Open Software Development for Computational Biology and Bioinformatics
-
-
Gentleman, R.1
Carey, V.J.2
Bates, D.J.3
Bolstad, B.M.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Guenther, S.20
Smith, C.21
Smyth, G.K.22
Tierney, L.23
Yang, Y.H.24
Zhang, J.25
more..
-
10
-
-
57149094101
-
-
New York, NY: Springer
-
Hahne F, Huber W, Gentleman R, Falcon S. Bioconductor Case Studies, Use R Series. New York, NY: Springer; 2008.
-
(2008)
Bioconductor Case Studies, Use R Series
-
-
Hahne, F.1
Huber, W.2
Gentleman, R.3
Falcon, S.4
-
11
-
-
33749546272
-
Statistical methods and software for the analysis of highthroughput reverse genetic assays using flow cytometry readouts
-
DOI 10.1186/gb-2006-7-8-r77
-
Hahne F, Arlt D, Sauermann M, Majety M, Poustka A, Wiemann S, Huber W. Statistical methods and software for the analysis of high-throughput reverse genetic assays using flow cytometry readouts. Genome Biol 2006;7:R77. (Pubitemid 44530041)
-
(2006)
Genome Biology
, vol.7
, Issue.8
-
-
Hahne, F.1
Arlt, D.2
Sauermann, M.3
Majety, M.4
Poustka, A.5
Wiemann, S.6
Huber, W.7
-
12
-
-
34250695049
-
Data quality assessment of ungated flow cytometry data in high throughput experiments
-
DOI 10.1002/cyto.a.20396
-
Le Meur N, Rossini A, Gasparetto M, Smith C, Brinkman RR, Gentleman R. Data quality assessment of ungated flow cytometry data in high throughput experiments. Cytometry A 2007;71A:393-403. (Pubitemid 46953182)
-
(2007)
Cytometry Part a
, vol.71
, Issue.6
, pp. 393-403
-
-
Le Meur, N.1
Rossini, A.2
Gasparetto, M.3
Smith, C.4
Brinkman, R.R.5
Gentleman, R.6
-
13
-
-
40749111960
-
Using flowviz to visualize flow cytometry data
-
Sarkar D, Le Meur N, Gentleman R. Using flowviz to visualize flow cytometry data. Bioinformatics 2008;24:878-879.
-
(2008)
Bioinformatics
, vol.24
, pp. 878-879
-
-
Sarkar, D.1
Le Meur, N.2
Gentleman, R.3
-
14
-
-
34147207728
-
Statistical analyses and reproducible research
-
Gentleman R, Lang DT. Statistical analyses and reproducible research. J Comput Graph Stat 2007;16:1-23.
-
(2007)
J Comput Graph Stat
, vol.16
, pp. 1-23
-
-
Gentleman, R.1
Lang, D.T.2
-
15
-
-
33745211703
-
Interpreting flow cytometry data: A guide for the perplexed
-
Herzenberg LA, Tung J, Moore WA, Herzenberg LA, Parks DR. Interpreting flow cytometry data: A guide for the perplexed. Nat Immunol 2006;7:681-685.
-
(2006)
Nat Immunol
, vol.7
, pp. 681-685
-
-
Herzenberg, L.A.1
Tung, J.2
Moore, W.A.3
Herzenberg, L.A.4
Parks, D.R.5
-
16
-
-
0031008918
-
Proposed new data file standard for flow cytometry, version FCS 3.0
-
DOI 10.1002/(SICI)1097-0320(19970601)28:2<118::AID-CYTO3>3.0.CO;2-B
-
Seamer LC, Bagwell CB, Barden L, Redelman D, Salzman GC, Wood JC, Murphy RF. Proposed new data file standard for flow cytometry, version fcs 3.0. Cytometry 1997;28:118-122. (Pubitemid 27237139)
-
(1997)
Cytometry
, vol.28
, Issue.2
, pp. 118-122
-
-
Seamer, L.C.1
Bagwell, C.B.2
Barden, L.3
Redelman, D.4
Salzman, G.C.5
Wood, J.C.S.6
Murphy, R.F.7
-
17
-
-
85047699080
-
A new "logicle" display method avoids deceptive effects of logarithmic scaling for low signals and compensated data
-
Parks DR, Roederer M, Moore WA. A new "logicle" display method avoids deceptive effects of logarithmic scaling for low signals and compensated data. Cytometry A 2006;69A:541-551.
-
(2006)
Cytometry A
, vol.69 A
, pp. 541-551
-
-
Parks, D.R.1
Roederer, M.2
Moore, W.A.3
-
18
-
-
14644444573
-
Hyperlog-a flexible log-like transform for negative, zero, and positive valued data
-
Bagwell CB. Hyperlog-a flexible log-like transform for negative, zero, and positive valued data. Cytometry A 2005;64A:34-42.
-
(2005)
Cytometry A
, vol.64 A
, pp. 34-42
-
-
Bagwell, C.B.1
-
19
-
-
67651026432
-
A mathematical simple alternative to the logarithmic transform for flow cytometric fluorescence data displays
-
Available at
-
Battye FL. A mathematical simple alternative to the logarithmic transform for flow cytometric fluorescence data displays. 2005 ISAC Samuel A. Latt Conference, Queensland, Australia. Available at: http://www.wehi.edu.au/ cytometry/Abstracts/ AFCG05B.html, 2005.
-
(2005)
2005 ISAC Samuel A. Latt Conference, Queensland, Australia
-
-
Battye, F.L.1
-
20
-
-
0043237580
-
On nonparametric discrimination using density differences
-
Hall P, Wand MP. On nonparametric discrimination using density differences. Biometrika 1988;75:541-547.
-
(1988)
Biometrika
, vol.75
, pp. 541-547
-
-
Hall, P.1
Wand, M.P.2
-
21
-
-
0001268552
-
A reliable data-based bandwidth selection method for kernel density estimation
-
Sheather SJ, Jones MC. A reliable data-based bandwidth selection method for kernel density estimation. J R Stat Soc Ser B 1991;53:683-690.
-
(1991)
J R Stat Soc Ser B
, vol.53
, pp. 683-690
-
-
Sheather, S.J.1
Jones, M.C.2
-
22
-
-
44849085131
-
Modulating temporal control of NF-(B activation: Implications for therapeutic and assay selection)
-
Klinke DJ, Ustyugova IV, Brundage KM, Barnett JB. Modulating temporal control of NF-(B activation: Implications for therapeutic and assay selection). Biophys J 2008;94:4249-4259.
-
(2008)
Biophys J
, vol.94
, pp. 4249-4259
-
-
Klinke, D.J.1
Ustyugova, I.V.2
Brundage, K.M.3
Barnett, J.B.4
-
23
-
-
0015981263
-
Mathematical analysis of DNA distributions derived from flow microfluorometry
-
Dean PN, Jett JH. Mathematical analysis of DNA distributions derived from flow microfluorometry. J Cell Biol 1974;60:523-527.
-
(1974)
J Cell Biol
, vol.60
, pp. 523-527
-
-
Dean, P.N.1
Jett, J.H.2
-
24
-
-
34548312216
-
Mixture-model classification in DNA content analysis
-
DOI 10.1002/cyto.a.20443
-
Wang H, Huang S. Mixture-model classification in DNA content analysis. Cytometry A 2007;71A:716-723. (Pubitemid 47347769)
-
(2007)
Cytometry Part a
, vol.71
, Issue.9
, pp. 716-723
-
-
Wang, H.1
Huang, S.2
-
26
-
-
34248139722
-
Subject classification obtained by cluster analysis and principal component analysis applied to flow cytometric data
-
DOI 10.1002/cyto.a.20387
-
Lugli E, Pinti M, Nasi M, Troiano L, Ferraresi R, Mussi C, Salvioli G, Patsekin V, Robinson JP, Durante C, Cocchi M, Cossarizza A. Subject classification obtained by cluster analysis and principal component analysis applied to flow cytometric data. Cytometry A 2007;71A:334-344. (Pubitemid 46717329)
-
(2007)
Cytometry Part a
, vol.71
, Issue.5
, pp. 334-344
-
-
Lugli, E.1
Pinti, M.2
Nasi, M.3
Troiano, L.4
Ferraresi, R.5
Mussi, C.6
Salvioli, G.7
Patsekin, V.8
Robinson, J.P.9
Durante, C.10
Cocchi, M.11
Cossarizza, A.12
-
27
-
-
0742306126
-
Enhanced Model-Based Clustering, Density Estimation, and Discriminant Analysis Software: MCLUST
-
Fraley C, Raftery AE. Enhanced model-based clustering, density estimation, and discriminant analysis software: MCLUST. J Classification 2003;20:263-286. (Pubitemid 38157158)
-
(2003)
Journal of Classification
, vol.20
, Issue.2
, pp. 263-286
-
-
Fraley, C.1
Raftery, A.E.2
|