Axis formation in Arabidopsis - transcription factors tell their side of the story

Current Opinion in Plant Biology

Volumn 15, Issue 1, 2012, Pages 4-9

  Jeong, Sangho ^a   Volny, Matthew ^b   Lukowitz, Wolfgang ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b University of Georgia   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; TRANSCRIPTION FACTOR;

ARABIDOPSIS; BIOLOGICAL MODEL; GENETICS; METABOLISM; MORPHOGENESIS; PRENATAL DEVELOPMENT; REVIEW; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; BODY PATTERNING; MODELS, BIOLOGICAL; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS;

ARABIDOPSIS; EMBRYOPHYTA;

EID: 84856214567     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbi.2011.10.007     Document Type: Review

References (49)

1. Jeong S., Bayer M., Lukowitz W. Taking the very first steps: from polarity to axial domains in the early Arabidopsis embryo. J Exp Bot 2010, 62:1687-1697.
2. Peris C.I., Rademacher E.H., Weijers D. Green beginnings - pattern formation in the early plant embryo. Curr Top Dev Biol 2010, 91:1-27.
3. Faure J.E., Rotman N., Fortune P., Dumas C. Fertilization in Arabidopsis thaliana wild type: developmental stages and time course. Plant J 2002, 30:481-488.
4. Ueda M., Zhang Z., Laux T. Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development. Dev Cell 2011, 20:264-270.
5. Breuninger H., Rikirsch E., Hermann M., Ueda M., Laux T. Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo. Dev Cell 2008, 14:867-876.
6. Haecker A., Gross-Hardt R., Geiges B., Sarkar A., Breuninger H., Herrmann M., Laux T. Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development 2004, 131:657-668.
7. Wu X., Chory J., Weigel D. Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. Dev Biol 2007, 309:306-316.
8. Matsumoto N., Okada K. A homeobox gene, PRESSED FLOWER, regulates lateral axis-dependent development of Arabidopsis flowers. Genes Dev 2001, 15:3355-3364.
9. Sarkar A.K., Luijten M., Miyashima S., Lenhard M., Hashimoto T., Nakajima K., Scheres B., Heidstra R., Laux T. Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature 2007, 446:811-814.
10. Lukowitz W., Roeder A., Parmenter D., Somerville C. A MAPKK kinase gene regulates extra-embryonic cell fate in Arabidopsis. Cell 2004, 116:109-119.
11. Wang H., Ngwenyama N., Liu Y., Walker J.C., Zhang S. Stomatal development and patterning are regulated by environmentally responsive mitogen-activated protein kinases in Arabidopsis. Plant Cell 2007, 19:63-73.
12. Jeong S., Palmer T.M., Lukowitz W. The RWP-RK factor GROUNDED promotes embryonic polarity by facilitating YODA MAP kinase signaling. Curr Biol 2011, 21:1268-1276.
13. Waki T., Hiki T., Watanabe R., Hashimoto T., Nakajima K. The Arabidopsis RWP-RK protein RKD4 triggers gene expression and pattern formation in early embryogenesis. Curr Biol 2011, 21:1277-1281.
14. Mao G., Meng X., Liu Y., Zheng Z., Chen Z., Zhang S. Phosphorylation of a WRKY transcription factor by two pathogen-responsive MAPKs drives phytoalexin biosynthesis in Arabidopsis. Plant Cell 2011, 23:1639-1653.
15. Bayer M., Nawy T., Giglione C., Galli M., Meinnel T., Lukowitz W. Paternal control of embryonic patterning in Arabidopsis thaliana. Science 2009, 323:1485-1488.
16. Aida M., Beis D., Heidstra R., Willemsen V., Blilou I., Galinha C., Nussaume L., Noh Y.S., Amasino R., Scheres B. The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell 2004, 119:109-120.
17. Nawy T., Bayer M., Mravec J., Friml J., Birnbaum K.D., Lukowitz W. The GATA factor HANABA TARANU is required to position the proembryo boundary in the early Arabidopsis embryo. Dev Cell 2010, 19:103-113.
18. Long J.A., Ohno C., Smith Z.R., Meyerowitz E.M. TOPLESS regulates apical embryonic fate in Arabidopsis. Science 2006, 312:1520-1523.
19. Smith Z.R., Long J.A. Control of Arabidopsis apical-basal embryo polarity by antagonistic transcription factors. Nature 2010, 464:423-426.
20. McConnell J.R., Emery J., Eshed Y., Bao N., Bowman J., Barton M.K. Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 2001, 411:709-713.
21. Grigg S.P., Galinha C., Kornet N., Canales C., Scheres B., Tsiantis M. Repression of apical homeobox genes is required for embryonic root development in Arabidopsis. Curr Biol 2009, 19:1485-1490.
22. Moller B., Weijers D. Auxin control of embryo patterning. Cold Spring Harb Perspect Biol 2009, 1:a001545.
23. Friml J., Vieten A., Sauer M., Weijers D., Schwarz H., Hamann T., Offringa R., Jurgens G. Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 2003, 426:147-153.
24. Steinmann T., Geldner N., Grebe M., Mangold S., Jackson C.L., Paris S., Galweiler L., Palme K., Jurgens G. Coordinated polar localization of auxin efflux carrier PIN1 by GNOM ARF GEF. Science 1999, 286:316-318.
25. Hardtke C.S., Berleth T. The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J 1998, 17:1405-1411.
26. Hardtke C.S., Ckurshumova W., Vidaurre D.P., Singh S.A., Stamatiou G., Tiwari S.B., Hagen G., Guilfoyle T.J., Berleth T. Overlapping and non-redundant functions of the Arabidopsis auxin response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4. Development 2004, 131:1089-1100.
27. Hamann T., Benkova E., Baurle I., Kientz M., Jurgens G. The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning. Genes Dev 2002, 16:1610-1615.
28. Hamann T., Mayer U., Jurgens G. The auxin-insensitive bodenlos mutation affects primary root formation and apical-basal patterning in the Arabidopsis embryo. Development 1999, 126:1387-1395.
29. Ploense S.E., Wu M.F., Nagpal P., Reed J.W. A gain-of-function mutation in IAA18 alters Arabidopsis embryonic apical patterning. Development 2009, 136:1509-1517.
30. Weijers D., Schlereth A., Ehrismann J.S., Schwank G., Kientz M., Jurgens G. Auxin triggers transient local signaling for cell specification in Arabidopsis embryogenesis. Dev Cell 2006, 10:265-270.
31. Bureau M., Rast M.I., Illmer J., Simon R. JAGGED LATERAL ORGAN (JLO) controls auxin dependent patterning during development of the Arabidopsis embryo and root. Plant Mol Biol 2010, 74:479-491.
32. Aida M., Vernoux T., Furutani M., Traas J., Tasaka M. Roles of PIN-FORMED1 and MONOPTEROS in pattern formation of the apical region of the Arabidopsis embryo. Development 2002, 129:3965-3974.
33. Furutani M., Vernoux T., Traas J., Kato T., Tasaka M., Aida M. PIN-FORMED1 and PINOID regulate boundary formation and cotyledon development in Arabidopsis embryogenesis. Development 2004, 131:5021-5030.
34. Chandler J.W., Cole M., Jacobs B., Comelli P., Werr W. Genetic integration of DORNROSCHEN and DORNROSCHEN-LIKE reveals hierarchical interactions in auxin signalling and patterning of the Arabidopsis apical embryo. Plant Mol Biol 2011, 75:223-236.
35. Takeda S., Aida M. Establishment of the embryonic shoot apical meristem in Arabidopsis thaliana. J Plant Res 2011, 124:211-219.
36. Huang F., Zago M.K., Abas L., van Marion A., Galvan-Ampudia C.S., Offringa R. Phosphorylation of conserved PIN motifs directs Arabidopsis PIN1 polarity and auxin transport. Plant Cell 2010, 22:1129-1142.
37. Michniewicz M., Zago M.K., Abas L., Weijers D., Schweighofer A., Meskiene I., Heisler M.G., Ohno C., Zhang J., Huang F., et al. Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux. Cell 2007, 130:1044-1056.
38. Christensen S.K., Dagenais N., Chory J., Weigel D. Regulation of auxin response by the protein kinase PINOID. Cell 2000, 100:469-478.
39. Friml J., Yang X., Michniewicz M., Weijers D., Quint A., Tietz O., Benjamins R., Ouwerkerk P.B., Ljung K., Sandberg G., et al. A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux. Science 2004, 306:862-865.
40. Cheng Y., Qin G., Dai X., Zhao Y. NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A 2008, 105:21017-21022.
41. Wolters H., Anders N., Geldner N., Gavidia R., Jurgens G. Coordination of apical and basal embryo development revealed by tissue-specific GNOM functions. Development 2011, 138:117-126.
42. Schlereth A., Moller B., Liu W., Kientz M., Flipse J., Rademacher E.H., Schmid M., Jurgens G., Weijers D. MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor. Nature 2010, 464:913-916.
43. Autran D., Baroux C., Raissig M.T., Lenormand T., Wittig M., Grob S., Steimer A., Barann M., Klostermeier U.C., Leblanc O., et al. Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis. Cell 2011, 145:707-719.
44. Le B.H., Cheng C., Bui A.Q., Wagmaister J.A., Henry K.F., Pelletier J., Kwong L., Belmonte M., Kirkbride R., Horvath S., et al. Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors. Proc Natl Acad Sci U S A 2010, 107:8063-8070.
45. Nodine M.D., Bartel D.P. MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis. Genes Dev 2010, 24:2678-2692.
46. Spencer M.W., Casson S.A., Lindsey K. Transcriptional profiling of the Arabidopsis embryo. Plant Physiol 2007, 143:924-940.
47. Xiang D., Venglat P., Tibiche C., Yang H., Risseeuw E., Cao Y., Babic V., Cloutier M., Keller W., Wang E., et al. Genome-wide analysis reveals gene expression and metabolic network dynamics during embryo development in Arabidopsis. Plant Physiol 2011, 156:346-356.
48. Geldner N. Cell polarity in plants: a PARspective on PINs. Curr Opin Plant Biol 2009, 12:42-48.
49. Nodine M.D., Bryan A.C., Racolta A., Jerosky K.V., Tax F.E. A few standing for many: embryo receptor-like kinases. Trends Plant Sci 2011, 16:211-217.