-
1
-
-
70350449411
-
Advances in the genetics of glioblastoma: are we reaching critical mass?
-
Purow B, Schiff D, (2009) Advances in the genetics of glioblastoma: are we reaching critical mass? Nat Rev Neurol 5: 419-426.
-
(2009)
Nat Rev Neurol
, vol.5
, pp. 419-426
-
-
Purow, B.1
Schiff, D.2
-
2
-
-
0034231449
-
Comparative genetic patterns of glioblastoma multiforme: potential diagnostic tool for tumor classification
-
Wiltshire RN, Rasheed BK, Friedman HS, Friedman AH, Bigner SH, (2000) Comparative genetic patterns of glioblastoma multiforme: potential diagnostic tool for tumor classification. Neuro Oncol 2: 164-173.
-
(2000)
Neuro Oncol
, vol.2
, pp. 164-173
-
-
Wiltshire, R.N.1
Rasheed, B.K.2
Friedman, H.S.3
Friedman, A.H.4
Bigner, S.H.5
-
3
-
-
20144389740
-
Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma
-
Nigro JM, Misra A, Zhang L, Smirnov I, Colman H, et al. (2005) Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. Cancer Res 65: 1678-1686.
-
(2005)
Cancer Res
, vol.65
, pp. 1678-1686
-
-
Nigro, J.M.1
Misra, A.2
Zhang, L.3
Smirnov, I.4
Colman, H.5
-
4
-
-
54549108740
-
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
-
Cancer Genome Atlas Research Network
-
Cancer Genome Atlas Research Network (2008) Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455: 1061-1068.
-
(2008)
Nature
, vol.455
, pp. 1061-1068
-
-
-
5
-
-
0037656514
-
Identification of molecular subtypes of glioblastoma by gene expression profiling
-
Mischel PS, Shai R, Shi T, Horvath S, Lu KV, et al. (2003) Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene 22: 2361-2673.
-
(2003)
Oncogene
, vol.22
, pp. 2361-2673
-
-
Mischel, P.S.1
Shai, R.2
Shi, T.3
Horvath, S.4
Lu, K.V.5
-
6
-
-
73649123907
-
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
-
Verhaak RG, Hoadley KA, Purdom E, Wang V, Qi Y, et al. (2010) Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell 17: 98-110.
-
(2010)
Cancer Cell
, vol.17
, pp. 98-110
-
-
Verhaak, R.G.1
Hoadley, K.A.2
Purdom, E.3
Wang, V.4
Qi, Y.5
-
7
-
-
75749115909
-
A multigene predictor of outcome in glioblastoma
-
Colman H, Zhang L, Sulman EP, McDonald JM, Shooshtari NL, et al. (2010) A multigene predictor of outcome in glioblastoma. Neuro Oncol 12: 49-57.
-
(2010)
Neuro Oncol
, vol.12
, pp. 49-57
-
-
Colman, H.1
Zhang, L.2
Sulman, E.P.3
McDonald, J.M.4
Shooshtari, N.L.5
-
8
-
-
77952108366
-
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
-
Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, et al. (2010) Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell 17: 510-522.
-
(2010)
Cancer Cell
, vol.17
, pp. 510-522
-
-
Noushmehr, H.1
Weisenberger, D.J.2
Diefes, K.3
Phillips, H.S.4
Pujara, K.5
-
9
-
-
0027294649
-
Recursive partitioning analysis of prognostic factors in three Radiation Therapy Oncology Group malignant glioma trials
-
Curran WJ Jr, Scott CB, Horton J, Nelson JS, Weinstein AS, et al. (1993) Recursive partitioning analysis of prognostic factors in three Radiation Therapy Oncology Group malignant glioma trials. J Natl Cancer Inst 85: 704-710.
-
(1993)
J Natl Cancer Inst
, vol.85
, pp. 704-710
-
-
Curran Jr., W.J.1
Scott, C.B.2
Horton, J.3
Nelson, J.S.4
Weinstein, A.S.5
-
10
-
-
37449003812
-
Nomograms for predicting survival of patients with newly diagnosed glioblastoma: prognostic factor analysis of EORTC and NCIC trial 26981-22981/CE.3
-
Gorlia T, van den Bent MJ, Hegi ME, Mirimanoff RO, Weller M, et al. (2008) Nomograms for predicting survival of patients with newly diagnosed glioblastoma: prognostic factor analysis of EORTC and NCIC trial 26981-22981/CE.3. Lancet Oncol 9: 29-38.
-
(2008)
Lancet Oncol
, vol.9
, pp. 29-38
-
-
Gorlia, T.1
van den Bent, M.J.2
Hegi, M.E.3
Mirimanoff, R.O.4
Weller, M.5
-
11
-
-
0004236492
-
-
Baltimore, Johns Hopkins University Press, third edition
-
Golub GH, Van Loan CF, (1996) Matrix Computations Baltimore Johns Hopkins University Press, third edition.
-
(1996)
Matrix Computations
-
-
Golub, G.H.1
Van Loan, C.F.2
-
12
-
-
0037452966
-
Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms
-
Alter O, Brown PO, Botstein D, (2003) Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms. Proc Natl Acad Sci USA 100: 3351-3356.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 3351-3356
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
13
-
-
84055207495
-
A higher-order generalized singular value decomposition for comparison of global mRNA expression from multiple organisms
-
Ponnapalli SP, Saunders MA, Van Loan CF, Alter O, (2011) A higher-order generalized singular value decomposition for comparison of global mRNA expression from multiple organisms. PLoS ONE 6: e28072.
-
(2011)
PLoS ONE
, vol.6
-
-
Ponnapalli, S.P.1
Saunders, M.A.2
Van Loan, C.F.3
Alter, O.4
-
14
-
-
84862927794
-
Known and novel copy number alterations in GBM and their patterns of co-occurrence are revealed by GSVD comparison of array CGH data from patient-matched normal and tumor TCGA samples
-
(November 2-6, 2010, Washington, DC)
-
Lee CH, Alter O, (2010) Known and novel copy number alterations in GBM and their patterns of co-occurrence are revealed by GSVD comparison of array CGH data from patient-matched normal and tumor TCGA samples. In: 60th Annual American Society of Human Genetics (ASHG) Meeting (November 2-6, 2010, Washington, DC).
-
(2010)
60th Annual American Society of Human Genetics (ASHG) Meeting
-
-
Lee, C.H.1
Alter, O.2
-
15
-
-
84862965728
-
Glioblastoma multiforme prognosis by using a patient's array CGH tumor profile and a generalized SVD-computed global pattern of copy-number alterations
-
(April 25-29, 2011, Dalian, China)
-
Alpert BO, Sankaranarayanan P, Lee CH, Alter O, (2011) Glioblastoma multiforme prognosis by using a patient's array CGH tumor profile and a generalized SVD-computed global pattern of copy-number alterations. In: 2nd DNA and Genome World Day (April 25-29, 2011, Dalian, China).
-
(2011)
2nd DNA and Genome World Day
-
-
Alpert, B.O.1
Sankaranarayanan, P.2
Lee, C.H.3
Alter, O.4
-
16
-
-
0037070754
-
Molecular characterisation of soft tissue tumours: a gene expression study
-
Nielsen TO, West RB, Linn SC, Alter O, Knowling MA, et al. (2002) Molecular characterisation of soft tissue tumours: a gene expression study. Lancet 359: 1301-1307.
-
(2002)
Lancet
, vol.359
, pp. 1301-1307
-
-
Nielsen, T.O.1
West, R.B.2
Linn, S.C.3
Alter, O.4
Knowling, M.A.5
-
17
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM, (1999) Systematic determination of genetic network architecture. Nat Genet 22: 281-285.
-
(1999)
Nat Genet
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
18
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, et al. (2002) The human genome browser at UCSC. Genome Res 12: 996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
-
19
-
-
78651320424
-
The UCSC Genome Browser database: update 2011
-
Fujita PA, Rhead B, Zweig AS, Hinrichs AS, Karolchik D, et al. (2011) The UCSC Genome Browser database: update 2011. Nucleic Acids Res 39: D876-D882.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Fujita, P.A.1
Rhead, B.2
Zweig, A.S.3
Hinrichs, A.S.4
Karolchik, D.5
-
20
-
-
3543105225
-
Circular binary segmentation for the analysis of array-based DNA copy number data
-
Olshen AB, Venkatraman ES, Lucito R, Wigler M, (2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5: 557-572.
-
(2004)
Biostatistics
, vol.5
, pp. 557-572
-
-
Olshen, A.B.1
Venkatraman, E.S.2
Lucito, R.3
Wigler, M.4
-
21
-
-
34147104969
-
A faster circular binary segmentation algorithm for the analysis of array CGH data
-
Venkatraman ES, Olshen AB, (2007) A faster circular binary segmentation algorithm for the analysis of array CGH data. Bioinformatics 23: 657-663.
-
(2007)
Bioinformatics
, vol.23
, pp. 657-663
-
-
Venkatraman, E.S.1
Olshen, A.B.2
-
22
-
-
14944343419
-
Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: implications for the interpretation of genomic amplifications
-
Heidenblad M, Lindgren D, Veltman JA, Jonson T, Mahlamäki EH, et al. (2005) Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: implications for the interpretation of genomic amplifications. Oncogene 24: 1794-1801.
-
(2005)
Oncogene
, vol.24
, pp. 1794-1801
-
-
Heidenblad, M.1
Lindgren, D.2
Veltman, J.A.3
Jonson, T.4
Mahlamäki, E.H.5
-
23
-
-
33745700217
-
Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number
-
Wang Q, Diskin S, Rappaport E, Attiyeh E, Mosse Y, et al. (2006) Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number. Cancer Res 66: 6050-6062.
-
(2006)
Cancer Res
, vol.66
, pp. 6050-6062
-
-
Wang, Q.1
Diskin, S.2
Rappaport, E.3
Attiyeh, E.4
Mosse, Y.5
-
25
-
-
0033570172
-
Mammalian homologues of the plant Tousled gene code for cell-cycle-regulated kinases with maximal activities linked to ongoing DNA replication
-
Silljé HH, Takahashi K, Tanaka K, Van Houwe G, Nigg EA, (1999) Mammalian homologues of the plant Tousled gene code for cell-cycle-regulated kinases with maximal activities linked to ongoing DNA replication. EMBO J 18: 5691-5702.
-
(1999)
EMBO J
, vol.18
, pp. 5691-5702
-
-
Silljé, H.H.1
Takahashi, K.2
Tanaka, K.3
Van Houwe, G.4
Nigg, E.A.5
-
26
-
-
34249709906
-
Gene expression profiles of prostate cancer reveal involvement of multiple molecular pathways in the metastatic process
-
Chandran UR, Ma C, Dhir R, Bisceglia M, Lyons-Weiler M, et al. (2007) Gene expression profiles of prostate cancer reveal involvement of multiple molecular pathways in the metastatic process. BMC Cancer 7: 64.
-
(2007)
BMC Cancer
, vol.7
, pp. 64
-
-
Chandran, U.R.1
Ma, C.2
Dhir, R.3
Bisceglia, M.4
Lyons-Weiler, M.5
-
27
-
-
61649096408
-
Expression profile of CREB knockdown in myeloid leukemia cells
-
Pellegrini M, Cheng JC, Voutila J, Judelson D, Taylor J, et al. (2008) Expression profile of CREB knockdown in myeloid leukemia cells. BMC Cancer 8: 264.
-
(2008)
BMC Cancer
, vol.8
, pp. 264
-
-
Pellegrini, M.1
Cheng, J.C.2
Voutila, J.3
Judelson, D.4
Taylor, J.5
-
28
-
-
33646000280
-
Gene expression profiles discriminate between pathological complete response and resistance to neoadjuvant FEC100 in breast cancer
-
Millour M, Charbonnel C, Magrangeas F, Minvielle S, Campion L, et al. (2006) Gene expression profiles discriminate between pathological complete response and resistance to neoadjuvant FEC100 in breast cancer. Cancer Genomics Proteomics 3: 89-95.
-
(2006)
Cancer Genomics Proteomics
, vol.3
, pp. 89-95
-
-
Millour, M.1
Charbonnel, C.2
Magrangeas, F.3
Minvielle, S.4
Campion, L.5
-
29
-
-
0038037230
-
Genome-wide-array-based comparative genomic hybridization reveals genetic homogeneity and frequent copy number increases encompassing CCNE1 in fallopian tube carcinoma
-
Snijders AM, Nowee ME, Fridlyand J, Piek JM, Dorsman JC, et al. (2003) Genome-wide-array-based comparative genomic hybridization reveals genetic homogeneity and frequent copy number increases encompassing CCNE1 in fallopian tube carcinoma. Oncogene 22: 4281-4286.
-
(2003)
Oncogene
, vol.22
, pp. 4281-4286
-
-
Snijders, A.M.1
Nowee, M.E.2
Fridlyand, J.3
Piek, J.M.4
Dorsman, J.C.5
-
30
-
-
78049380554
-
The patterns and dynamics of genomic instability in metastatic pancreatic cancer
-
Campbell PJ, Yachida S, Mudie LJ, Stephens PJ, Pleasance ED, et al. (2010) The patterns and dynamics of genomic instability in metastatic pancreatic cancer. Nature 467: 1109-1113.
-
(2010)
Nature
, vol.467
, pp. 1109-1113
-
-
Campbell, P.J.1
Yachida, S.2
Mudie, L.J.3
Stephens, P.J.4
Pleasance, E.D.5
-
31
-
-
78649751900
-
Amplicon-dependent CCNE1 expression is critical for clonogenic survival after cisplatin treatment and is correlated with 20q11 gain in ovarian cancer
-
Etemadmoghadam D, George J, Cowin PA, Cullinane C, Kansara M, et al. (2010) Amplicon-dependent CCNE1 expression is critical for clonogenic survival after cisplatin treatment and is correlated with 20q11 gain in ovarian cancer. PLoS ONE 5: e15498.
-
(2010)
PLoS ONE
, vol.5
-
-
Etemadmoghadam, D.1
George, J.2
Cowin, P.A.3
Cullinane, C.4
Kansara, M.5
-
32
-
-
0025808021
-
Cloning of cDNAs for cellular proteins that bind to the retinoblastoma gene product
-
Defeo-Jones D, Huang PS, Jones RE, Haskell KM, Vuocolo GA, et al. (1991) Cloning of cDNAs for cellular proteins that bind to the retinoblastoma gene product. Nature 352: 251-254.
-
(1991)
Nature
, vol.352
, pp. 251-254
-
-
Defeo-Jones, D.1
Huang, P.S.2
Jones, R.E.3
Haskell, K.M.4
Vuocolo, G.A.5
-
33
-
-
77950809059
-
A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations
-
Sharma SV, Lee DY, Li B, Quinlan MP, Takahashi F, et al. (2010) A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations. Cell 141: 69-80.
-
(2010)
Cell
, vol.141
, pp. 69-80
-
-
Sharma, S.V.1
Lee, D.Y.2
Li, B.3
Quinlan, M.P.4
Takahashi, F.5
-
34
-
-
12344273726
-
The blood-brain barrier: bottleneck in brain drug development
-
Pardridge WM, (2005) The blood-brain barrier: bottleneck in brain drug development. NeuroRx 2: 3-14.
-
(2005)
NeuroRx
, vol.2
, pp. 3-14
-
-
Pardridge, W.M.1
-
35
-
-
36048975790
-
Identification of a neuron-specific human gene, KIAA1110, that is a guanine nucleotide exchange factor for ARF1
-
Hattori Y, Ohta S, Hamada K, Yamada-Okabe H, Kanemura Y, et al. (2007) Identification of a neuron-specific human gene, KIAA1110, that is a guanine nucleotide exchange factor for ARF1. Biochem Biophys Res Commun 364: 737-742.
-
(2007)
Biochem Biophys Res Commun
, vol.364
, pp. 737-742
-
-
Hattori, Y.1
Ohta, S.2
Hamada, K.3
Yamada-Okabe, H.4
Kanemura, Y.5
-
36
-
-
33845382806
-
Nonparametric estimation from incomplete observations
-
Kaplan EL, Meier P, (1958) Nonparametric estimation from incomplete observations. J Amer Statist Assn 53: 457-481.
-
(1958)
J Amer Statist Assn
, vol.53
, pp. 457-481
-
-
Kaplan, E.L.1
Meier, P.2
-
37
-
-
0000336139
-
Regression models and life-tables
-
Cox DR, (1972) Regression models and life-tables. J Roy Statist Soc B 34: 187-220.
-
(1972)
J Roy Statist Soc B
, vol.34
, pp. 187-220
-
-
Cox, D.R.1
-
38
-
-
0025031812
-
No adjustments are needed for multiple comparisons
-
Rothman KJ, (1990) No adjustments are needed for multiple comparisons. Epidemiology 1: 43-46.
-
(1990)
Epidemiology
, vol.1
, pp. 43-46
-
-
Rothman, K.J.1
-
39
-
-
33750808399
-
Discovery of principles of nature from mathematical modeling of DNA microarray data
-
Alter O, (2006) Discovery of principles of nature from mathematical modeling of DNA microarray data. Proc Natl Acad Sci USA 103: 16063-16064.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 16063-16064
-
-
Alter, O.1
-
40
-
-
73149099424
-
Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression
-
Omberg L, Meyerson JR, Kobayashi K, Drury LS, Diffley JF, et al. (2009) Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression. Mol Syst Biol 5: 312.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 312
-
-
Omberg, L.1
Meyerson, J.R.2
Kobayashi, K.3
Drury, L.S.4
Diffley, J.F.5
-
41
-
-
9344230857
-
Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription
-
Alter O, Golub GH, (2004) Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription. Proc Natl Acad Sci USA 101: 16577-16582.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 16577-16582
-
-
Alter, O.1
Golub, G.H.2
-
42
-
-
36749028922
-
A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies
-
Omberg L, Golub GH, Alter O, (2007) A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies. Proc Natl Acad Sci USA 104: 18371-18376.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 18371-18376
-
-
Omberg, L.1
Golub, G.H.2
Alter, O.3
|