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Volumn , Issue , 2011, Pages 1743-1750

RNA structure characterization from chemical mapping experiments

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL MAPPING; CLOSED FORM; EXPERIMENTAL APPROACHES; HIGH-THROUGHPUT; MAXIMUM LIKELIHOOD ESTIMATE; ML ESTIMATION; NEW MODEL; OPEN PROBLEMS; RNA SECONDARY STRUCTURES; RNA STRUCTURES; SEQUENCE DATA;

EID: 84856092623     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/Allerton.2011.6120379     Document Type: Conference Paper
Times cited : (33)

References (20)
  • 1
    • 60149103676 scopus 로고    scopus 로고
    • The centrality of RNA
    • Feb.
    • P. A. Sharp, "The centrality of RNA," Cell, vol. 136, pp. 577-580, Feb. 2009.
    • (2009) Cell , vol.136 , pp. 577-580
    • Sharp, P.A.1
  • 2
    • 79957840356 scopus 로고    scopus 로고
    • Long noncoding RNAs and human disease
    • June
    • O. Wapinski and H. Y. Chang, "Long noncoding RNAs and human disease," Trends Cell Biol., vol. 21, pp. 354-361, June 2011.
    • (2011) Trends Cell Biol. , vol.21 , pp. 354-361
    • Wapinski, O.1    Chang, H.Y.2
  • 4
    • 77955787630 scopus 로고    scopus 로고
    • Advances in RNA structure analysis by chemical probing
    • June
    • K. M. Weeks, "Advances in RNA structure analysis by chemical probing," Curr. Op. Struct. Biol., vol. 20, pp. 295-304, June 2010.
    • (2010) Curr. Op. Struct. Biol. , vol.20 , pp. 295-304
    • Weeks, K.M.1
  • 5
    • 79959304412 scopus 로고    scopus 로고
    • Sharing and archiving nucleic acid structure mapping data
    • June
    • P. Rocca-Serra et al., "Sharing and archiving nucleic acid structure mapping data," RNA, vol. 17, pp. 1204-1212, June 2011.
    • (2011) RNA , vol.17 , pp. 1204-1212
    • Rocca-Serra, P.1
  • 7
    • 77957139491 scopus 로고    scopus 로고
    • SHAPE-directed RNA secondary structure prediction
    • Oct.
    • J. T. Low and K. M. Weeks, "SHAPE-directed RNA secondary structure prediction," Methods, vol. 52, pp. 150-158, Oct. 2010.
    • (2010) Methods , vol.52 , pp. 150-158
    • Low, J.T.1    Weeks, K.M.2
  • 8
    • 33947720028 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
    • Nov.
    • K. A. Wilkinson, E. J. Merino, and K. M. Weeks, "Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution," Nat. Protoc., vol. 1, pp. 1610-1616, Nov. 2006.
    • (2006) Nat. Protoc. , vol.1 , pp. 1610-1616
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3
  • 9
    • 79960571755 scopus 로고    scopus 로고
    • Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
    • July
    • J. B. Lucks et al., "Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)," Proc. Natl. Acad. Sci. USA, vol. 108, pp. 11063-11068, July 2011.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 11063-11068
    • Lucks, J.B.1
  • 10
    • 79960581588 scopus 로고    scopus 로고
    • Modeling and automation of sequencing-based characterization of RNA structure
    • July
    • S. Aviran et al., "Modeling and automation of sequencing-based characterization of RNA structure," Proc. Natl. Acad. Sci. USA, vol. 108, pp. 11069-11074, July 2011.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 11069-11074
    • Aviran, S.1
  • 11
    • 0000568233 scopus 로고    scopus 로고
    • On the comparison of multinomial and Poisson log-linear models
    • Jan.
    • J. B. Lang, "On the comparison of multinomial and Poisson log-linear models," J. Royal Stat. Soc. B 58:253-266, Jan. 1996.
    • (1996) J. Royal Stat. Soc. B , vol.58 , pp. 253-266
    • Lang, J.B.1
  • 12
    • 52949152433 scopus 로고    scopus 로고
    • ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
    • Oct.
    • S. M. Vasa, N. Guex, K. A. Wilkinson, K. M. Weeks, and M. C. Giddings, "ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis," RNA, vol. 14, pp. 1979-1990, Oct. 2008.
    • (2008) RNA , vol.14 , pp. 1979-1990
    • Vasa, S.M.1    Guex, N.2    Wilkinson, K.A.3    Weeks, K.M.4    Giddings, M.C.5
  • 15
    • 80052729501 scopus 로고    scopus 로고
    • Understanding the errors of SHAPE-directed RNA structure modeling
    • in press
    • W. Kladwang W, C. C. VanLang, P. Cordero, and R. Das, "Understanding the errors of SHAPE-directed RNA structure modeling,"Biochemistry, in press.
    • Biochemistry
    • Kladwang W, W.1    VanLang, C.C.2    Cordero, P.3    Das, R.4
  • 16
    • 46349099944 scopus 로고    scopus 로고
    • High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis
    • May
    • S. Mitra, I. V. Shcherbakova, R. B. Altman, M. Brenowitz, and A. Laederach, "High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis," Nucl. Acid Res., vol. 36, pp. e63:1-10, May 2008.
    • (2008) Nucl. Acid Res. , vol.36
    • Mitra, S.1    Shcherbakova, I.V.2    Altman, R.B.3    Brenowitz, M.4    Laederach, A.5
  • 17
    • 79959458096 scopus 로고    scopus 로고
    • HiTRACE: High-throughput robust analysis for capillary electrophoresis
    • June
    • S. Yoon et al., "HiTRACE: High-throughput robust analysis for capillary electrophoresis," Bioinformatics, vol. 27, pp. 17981805, June 2011.
    • (2011) Bioinformatics , vol.27 , pp. 17981805
    • Yoon, S.1
  • 18
    • 77955834766 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease
    • July
    • K. A. Steen., A. Malhotra A, and K. M. Weeks, "Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease," J. Am. Chem. Soc., vol. 132, pp. 9940-9943, July 2010.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 9940-9943
    • Steen, K.A.1    A, A.M.2    Weeks, K.M.3
  • 19
    • 40849123031 scopus 로고    scopus 로고
    • High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
    • Apr.
    • K. A. Wilkinson et al., "High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states," PLoS Biol., vol. 6, pp. e96:883-899, Apr. 2008.
    • (2008) PLoS Biol. , vol.6
    • Wilkinson, K.A.1
  • 20
    • 68449092202 scopus 로고    scopus 로고
    • Architecture and secondary structure of an entire HIV-1 RNA genome
    • Aug.
    • J. M. Watts et al., "Architecture and secondary structure of an entire HIV-1 RNA genome," Nature, vol. 460, pp. 711-716, Aug. 2009.
    • (2009) Nature , vol.460 , pp. 711-716
    • Watts, J.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.