-
1
-
-
23344451687
-
Structure, function, and evolution of transient and obligate protein-protein interactions
-
J. Mintseris and Z. Weng, "Structure, function, and evolution of transient and obligate protein-protein interactions," Proc Natl Acad Sci, USA, vol. 102, no. 31, pp. 10 930-10 935, 2005.
-
(2005)
Proc Natl Acad Sci, USA
, vol.102
, Issue.31
, pp. 10930-10935
-
-
Mintseris, J.1
Weng, Z.2
-
2
-
-
33644639293
-
Noxclass: Prediction of protein-protein interaction types
-
doi:10.1186/1471-2105-7-27
-
H. Zhu, F. Domingues, I. Sommer, and T. Lengauer, "Noxclass: Prediction of protein-protein interaction types," BMC Bioinformatics, vol. 7, no. 27, 2006, doi:10.1186/1471-2105-7-27.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.27
-
-
Zhu, H.1
Domingues, F.2
Sommer, I.3
Lengauer, T.4
-
3
-
-
0041312697
-
Diversity of protein-protein interactions
-
I. Nooren and J. Thornton, "Diversity of protein-protein interactions," EMBO Journal, vol. 22, no. 14, pp. 3846-3892, 2003.
-
(2003)
EMBO Journal
, vol.22
, Issue.14
, pp. 3846-3892
-
-
Nooren, I.1
Thornton, J.2
-
4
-
-
0030028728
-
Principles of protein-protein interactions
-
S. Jones and J. M. Thornton, "Principles of protein-protein interactions," Proc. Natl Acad. Sci, USA, vol. 93, no. 1, pp. 13-20, 1996.
-
(1996)
Proc. Natl Acad. Sci, USA
, vol.93
, Issue.1
, pp. 13-20
-
-
Jones, S.1
Thornton, J.M.2
-
5
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
DOI 10.1006/jmbi.1998.2439
-
L. LoConte, C. Chothia, and J. Janin, "The atomic structure of protein-protein recognition sites," J Mol Biol, vol. 285, no. 5, pp. 2177-2198, 1999. (Pubitemid 29078179)
-
(1999)
Journal of Molecular Biology
, vol.285
, Issue.5
, pp. 2177-2198
-
-
Conte, L.L.1
Chothia, C.2
Janin, J.3
-
6
-
-
77955214740
-
Comparing interfacial dynamics in protein-protein complexes: An elastic network approach
-
doi: 10.1186/1472-6807-10-26
-
O. K. A. Zen, C. Micheletti and R. Nussinov, "Comparing interfacial dynamics in protein-protein complexes: an elastic network approach," BMC Structural Biology, vol. 10, no. 26, 2010, doi: 10.1186/1472-6807-10-26.
-
(2010)
BMC Structural Biology
, vol.10
, Issue.26
-
-
Zen, O.K.A.1
Micheletti, C.2
Nussinov, R.3
-
7
-
-
0028332007
-
A role for surface hydrophobicity in protein-protein recognition
-
J. Young, "A role for surface hydrophobicity in protein protein recognition," Protein Sci, vol. 3, pp. 717-729, 1994. (Pubitemid 24139897)
-
(1994)
Protein Science
, vol.3
, Issue.5
, pp. 717-729
-
-
Young, L.1
Jernigan, R.L.2
Covell, D.G.3
-
8
-
-
0035342450
-
Residue frequencies and pairing preferences at protein-protein interfaces
-
F. Glaser, D. M. Steinberg, I. A. Vakser, and N. Ben- Tal, "Residue frequencies and pairing preferences at protein-protein interfaces," Proteins, vol. 43, no. 2, pp. 89-102, 2001.
-
(2001)
Proteins
, vol.43
, Issue.2
, pp. 89-102
-
-
Glaser, F.1
Steinberg, D.M.2
Vakser, I.A.3
Ben-Tal, N.4
-
9
-
-
24044457630
-
Amino acid architecture and the distribution of polar atoms on the surfaces of proteins
-
DOI 10.1002/bip.20295
-
H. Shanahan and J. Thornton, "Amino acid architecture and the distribution of polar atoms on the surfaces of proteins,"Biopolymers, vol. 78, no. 6, pp. 318-328, 2005. (Pubitemid 41225228)
-
(2005)
Biopolymers
, vol.78
, Issue.6
, pp. 318-328
-
-
Shanahan, H.P.1
Thornton, J.M.2
-
10
-
-
0027772959
-
Shape complementarity at protein/protein interfaces
-
M. C. Lawrence and P. M. Colman, "Shape complementarity at protein/protein interfaces," J. Mol Biol, vol. 234, no. 4, pp.946-950, 1993.
-
(1993)
J. Mol Biol
, vol.234
, Issue.4
, pp. 946-950
-
-
Lawrence, M.C.1
Colman, P.M.2
-
11
-
-
0242299207
-
Atomic Contact Vectors in Protein-Protein Recognition
-
DOI 10.1002/prot.10432
-
J. Mintseris and Z. Weng, "Atomic contact vectors in protein-protein recognition," PROTEINS: Structure, Function and Genetics, vol. 53, pp. 629-639, 2003. (Pubitemid 37352176)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.53
, Issue.3
, pp. 629-639
-
-
Mintseris, J.1
Weng, Z.2
-
12
-
-
79952418821
-
Protein-protein interaction prediction using desolvation energies and interface properties
-
L. Rueda, S. Banerjee, M. M. Aziz, and M. Raza, "Protein-protein interaction prediction using desolvation energies and interface properties." Proceedings of the 2nd. IEEE International Conference on Bioinformatics & Biomedicine (BIBM 2010), pp. 17-22, 2010.
-
(2010)
Proceedings of the 2nd. IEEE International Conference on Bioinformatics & Biomedicine (BIBM 2010)
, pp. 17-22
-
-
Rueda, L.1
Banerjee, S.2
Aziz, M.M.3
Raza, M.4
-
13
-
-
78049477853
-
Biological protein-protein interaction prediction using binding free energies and linear dimensionality reduction
-
L. Rueda, C. Garate, Banerjee, and M. M. Aziz, "Biological protein-protein interaction prediction using binding free energies and linear dimensionality reduction." Proceedings of the 5th. IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2010), pp. 383-394, 2010.
-
(2010)
Proceedings of the 5th. IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2010)
, pp. 383-394
-
-
Rueda, L.1
Garate, C.2
Banerjee3
Aziz, M.M.4
-
14
-
-
80053014109
-
Prediction of biological protein-protein interactions using atom-type and amino acid properties
-
in press
-
M. M. Aziz, M. Maleki, L. Rueda, M. Raza, and S. Banerjee, "Prediction of biological protein-protein interactions using atom-type and amino acid properties," Proteomics 2011 (in press).
-
(2011)
Proteomics
-
-
Aziz, M.M.1
Maleki, M.2
Rueda, L.3
Raza, M.4
Banerjee, S.5
-
15
-
-
24944549109
-
Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different
-
S. De, O. Krishnadev, N. Srinivasan, and N. Rekha, "Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different." BMC Structural Biology, vol. 5, no. 15, 2005.
-
(2005)
BMC Structural Biology
, vol.5
, Issue.15
-
-
De, S.1
Krishnadev, O.2
Srinivasan, N.3
Rekha, N.4
-
16
-
-
77954644930
-
Structural features and evolution of protein-protein interactions
-
J. V. Eichborn, S. Gnther, and R. Preissner, "Structural features and evolution of protein-protein interactions." Intenational Conference of Genome Informatics., vol. 22, pp. 1-10, 2010.
-
(2010)
Intenational Conference of Genome Informatics
, vol.22
, pp. 1-10
-
-
Eichborn, J.V.1
Gnther, S.2
Preissner, R.3
-
18
-
-
79959196463
-
Methods of forward feature selection based on the aggregation of classifiers generated by single attribute
-
L. Luo, L. Ye, M. Luo, D. Huang, H. Peng, and F. Yang, "Methods of forward feature selection based on the aggregation of classifiers generated by single attribute." Comput Biol Med., vol. 41, no. 7, pp. 435-41, 2011.
-
(2011)
Comput Biol Med
, vol.41
, Issue.7
, pp. 435-441
-
-
Luo, L.1
Ye, L.2
Luo, M.3
Huang, D.4
Peng, H.5
Yang, F.6
-
19
-
-
51649118105
-
Incremental forward feature selection with application to microarray gene expression data
-
Y. Lee, C. Chang, and C. Chao, "Incremental forward feature selection with application to microarray gene expression data." Journal of biopharmaceutical statistics, vol. 18, no. 5, pp. 827-840, 2008.
-
(2008)
Journal of Biopharmaceutical Statistics
, vol.18
, Issue.5
, pp. 827-840
-
-
Lee, Y.1
Chang, C.2
Chao, C.3
-
20
-
-
17644384367
-
Minimum redundancy feature selection from microarray gene expression data
-
DOI 10.1142/S0219720005001004, PII S0219720005001004
-
C. Ding and H. Peng, "Minimum redundancy feature selection from microarray gene expression data." Journal of Bioinformatics and Computational Biology., vol. 3, no. 2, pp. 185-205, 2005. (Pubitemid 40561382)
-
(2005)
Journal of Bioinformatics and Computational Biology
, vol.3
, Issue.2
, pp. 185-205
-
-
Ding, C.1
Peng, H.2
-
21
-
-
78649884719
-
Prediction of tyrosine sulfation with mrmr feature selection and analysis
-
S. Niu, T. Huang, K. Feng, Y. Cai, and Y. Li, "Prediction of tyrosine sulfation with mrmr feature selection and analysis."J Proteome Res, vol. 9, no. 12, pp. 6490-6497, 2010.
-
(2010)
J Proteome Res
, vol.9
, Issue.12
, pp. 6490-6497
-
-
Niu, S.1
Huang, T.2
Feng, K.3
Cai, Y.4
Li, Y.5
-
22
-
-
84862649597
-
Prediction of lysine ubiquitination with mrmr feature selection and analysis
-
Y. Cai, T. Huang, L. Hu, X. Shi, L. Xie, and Y. Li, "Prediction of lysine ubiquitination with mrmr feature selection and analysis." Amino Acids, 2011.
-
(2011)
Amino Acids
-
-
Cai, Y.1
Huang, T.2
Hu, L.3
Shi, X.4
Xie, L.5
Li, Y.6
-
23
-
-
60349114820
-
Prediction of proteinprotein interactions based on pseaa composition and hybrid feature selection
-
L. Liu, Y. D. Cai, W. C. Lu, C. Peng, and B. Niub, "Prediction of proteinprotein interactions based on pseaa composition and hybrid feature selection." Biochemical and Biophysical Research Communications, vol. 380, no. 2, pp. 318-322, 2009.
-
(2009)
Biochemical and Biophysical Research Communications
, vol.380
, Issue.2
, pp. 318-322
-
-
Liu, L.1
Cai, Y.D.2
Lu, W.C.3
Peng, C.4
Niub, B.5
-
24
-
-
78650171810
-
Prediction of interactiveness of proteins and nucleic acids based on feature selections
-
Y. Yuan, x. Shi, X. Li, W. Lu, Y. Cai, L. Gu, L. Liu, M. Li, X. Kong, and M. Xing, "Prediction of interactiveness of proteins and nucleic acids based on feature selections." Mol Divers., vol. 14, no. 4, pp. 627-33, 2009.
-
(2009)
Mol Divers
, vol.14
, Issue.4
, pp. 627-633
-
-
Yuan, Y.1
Shi, X.2
Li, X.3
Lu, W.4
Cai, Y.5
Gu, L.6
Liu, L.7
Li, M.8
Kong, X.9
Xing, M.10
-
25
-
-
77950538864
-
Svm-rfe with mrmr filter for gene selection
-
P. Mundra and J. Rajapakse, "Svm-rfe with mrmr filter for gene selection." IEEE Transactions on Nanobioscience, vol. 9, no. 1, pp. 31-37, 2010.
-
(2010)
IEEE Transactions on Nanobioscience
, vol.9
, Issue.1
, pp. 31-37
-
-
Mundra, P.1
Rajapakse, J.2
-
27
-
-
18844462557
-
FastContact: Rapid estimate of contact and binding free energies
-
DOI 10.1093/bioinformatics/bti322
-
C. Camacho and C. Zhang, "FastContact: rapid estimate of contact and binding free energies," Bioinformatics, vol. 21, no. 10, pp. 2534-2536, 2005. (Pubitemid 40731617)
-
(2005)
Bioinformatics
, vol.21
, Issue.10
, pp. 2534-2536
-
-
Camacho, C.J.1
Zhang, C.2
-
28
-
-
0031552370
-
Determination of atomic desolvation energies from the structures of crystallized proteins
-
DOI 10.1006/jmbi.1996.0859
-
C. Zhang, G. Vasmatzis, J. L.Cornette, and C. DeLisi, "Determination of atomic desolvation energies from the structures of crystallized proteins," J. Mol. Biol., vol. 267, pp. 707-726, 1997. (Pubitemid 27170692)
-
(1997)
Journal of Molecular Biology
, vol.267
, Issue.3
, pp. 707-726
-
-
Zhang, C.1
Vasmatzis, G.2
Cornette, J.L.3
DeLisi, C.4
-
29
-
-
0033954256
-
The Protein Data Bank
-
H. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. Bhat, H. Weissig, I. Shindyalov, and P. Bourne, "The Protein Data Bank," Nucleic Acids Research, vol. 28, pp. 235-242, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.7
Bourne, P.8
-
30
-
-
45849107211
-
Linear Dimensionality Reduction by Maximizing the Chernoff Distance in the Transformed Space
-
L. Rueda and M. Herrera, "Linear Dimensionality Reduction by Maximizing the Chernoff Distance in the Transformed Space," Pattern Recognition, vol. 41, no. 10, pp. 3138-3152, 2008.
-
(2008)
Pattern Recognition
, vol.41
, Issue.10
, pp. 3138-3152
-
-
Rueda, L.1
Herrera, M.2
-
31
-
-
24344458137
-
Feature selection based on mutual information: Criteria of Max-Dependency, Max-Relevance, and Min-Redundancy
-
DOI 10.1109/TPAMI.2005.159
-
H. Peng, F. Long, and C. Ding, "Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. " IEEE Transactions on Pattern Analysis and Machine Intelligence., vol. 27, no. 8, pp. 1226-1238, 2005. (Pubitemid 41245053)
-
(2005)
IEEE Transactions on Pattern Analysis and Machine Intelligence
, vol.27
, Issue.8
, pp. 1226-1238
-
-
Peng, H.1
Long, F.2
Ding, C.3
|