-
1
-
-
33745156134
-
An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs
-
DOI 10.1093/nar/gkl396
-
Y. Xing, T. Yu, Y. N. Wu, M. Roy, J. Kim, and C. Lee, "An expectation-maximization algorithm for probabilistic reconstruction of full-length isoforms from splice graphs," Nucleic Acids Research, vol. 34, no. 10, pp. 3150-3160, 2006. (Pubitemid 44540440)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.10
, pp. 3150-3160
-
-
Xing, Y.1
Yu, T.2
Wu, Y.N.3
Roy, M.4
Kim, J.5
Lee, C.6
-
2
-
-
43549091611
-
Space: An algorithm to predict and quantify alternatively spliced isoforms using microarrays genome biology
-
M. A. Anton, D. Gorostiaga, E. Guruceaga, V. Segura, P. Carmona-Saez, A. Pascual-Montano, R. Pio, L. M. Montuenga, and A. Rubio, "Space: an algorithm to predict and quantify alternatively spliced isoforms using microarrays genome biology," Genome Biology, vol. 9, no. 2, p. R46, 2008.
-
(2008)
Genome Biology
, vol.9
, Issue.2
-
-
Anton, M.A.1
Gorostiaga, D.2
Guruceaga, E.3
Segura, V.4
Carmona-Saez, P.5
Pascual-Montano, A.6
Pio, R.7
Montuenga, L.M.8
Rubio, A.9
-
3
-
-
64549119707
-
Statistical inferences for isoform expression in rna-seq
-
H. Jiang and W. H. Wong, "Statistical inferences for isoform expression in rna-seq," Bioinformatics, vol. 25, no. 8, pp. 1026-1032, 2009.
-
(2009)
Bioinformatics
, vol.25
, Issue.8
, pp. 1026-1032
-
-
Jiang, H.1
Wong, W.H.2
-
4
-
-
78650004236
-
Isoform abundance inference provides a more accurate estimation of gene expression levels in rna-seq
-
X. Wang, Z. Wu, and X. Zhang, "Isoform abundance inference provides a more accurate estimation of gene expression levels in rna-seq," Journal of Bioinformatics and Computational Biology, vol. 8, no. Suppl 1, pp. 177-192, 2010.
-
(2010)
Journal of Bioinformatics and Computational Biology
, vol.8
, Issue.SUPPL. 1
, pp. 177-192
-
-
Wang, X.1
Wu, Z.2
Zhang, X.3
-
5
-
-
77949507153
-
Rna-seq gene expression estimation with read mapping uncertainty
-
B. Li, V. Ruotti, R. M. Stewart, J. A. Thomson, and C. N. Dewey, "Rna-seq gene expression estimation with read mapping uncertainty," Bioinformatics, vol. 26, no. 4, p. 493500, 2010.
-
(2010)
Bioinformatics
, vol.26
, Issue.4
, pp. 493500
-
-
Li, B.1
Ruotti, V.2
Stewart, R.M.3
Thomson, J.A.4
Dewey, C.N.5
-
6
-
-
77952123055
-
Transcript assembly and quantification by rna-seq reveals unannotated transcripts and isoform switching during cell differentiation
-
C. Trapnell, B. A. Williams, G. Pertea, A. Mortazavi, G. Kwan, M. J. van Baren, S. L. Salzberg, B. J. Wold, and L. Pachter, "Transcript assembly and quantification by rna-seq reveals unannotated transcripts and isoform switching during cell differentiation," Nature Biotechnology, vol. 28, no. 5, pp. 511-515, 2010.
-
(2010)
Nature Biotechnology
, vol.28
, Issue.5
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
7
-
-
79955082292
-
Estimation of alternative splicing isoform frequencies from rna-seq data
-
M. Nicolae, S. Mangul, I. Mandoiu, and A. Zelikovsky, "Estimation of alternative splicing isoform frequencies from rna-seq data," Algorithms Mol Biol., vol. 6, no. 1, p. 9, 2011.
-
(2011)
Algorithms Mol Biol
, vol.6
, Issue.1
, pp. 9
-
-
Nicolae, M.1
Mangul, S.2
Mandoiu, I.3
Zelikovsky, A.4
-
8
-
-
79956015003
-
Isoform-level microrna-155 target prediction using rnaseq
-
N. Deng, A. Puetter, K. Zhang, K. Johnson, Z. Zhao, C. Taylor, E. K. Flemington, and D. Zhu, "Isoform-level microrna-155 target prediction using rnaseq," Nucleic Acids Research, vol. 39, no. 9, p. e61, 2011.
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.9
-
-
Deng, N.1
Puetter, A.2
Zhang, K.3
Johnson, K.4
Zhao, Z.5
Taylor, C.6
Flemington, E.K.7
Zhu, D.8
-
9
-
-
77954302477
-
Rquant.web: A tool for rnaseq- Based transcript quantitation
-
R. Bohnert and G. Ratsch, "rquant.web: a tool for rnaseq- based transcript quantitation," Nucleic Acids Research, vol. 38, no. suppl 2, pp. W348-W351, 2010.
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.SUPPL. 2
-
-
Bohnert, R.1
Ratsch, G.2
-
11
-
-
78651289575
-
Sammate: A gui tool for processing short read alignments in sam/bam format
-
G. Xu, N. Deng, Z. Zhao, T. Judeh, E. Flemington, and D. Zhu, "Sammate: a gui tool for processing short read alignments in sam/bam format," Source Code Biol Med., vol. 6, no. 1, p. 2, 2011.
-
(2011)
Source Code Biol Med
, vol.6
, Issue.1
, pp. 2
-
-
Xu, G.1
Deng, N.2
Zhao, Z.3
Judeh, T.4
Flemington, E.5
Zhu, D.6
|