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Volumn 6, Issue 2, 2012, Pages 352-362

Phylogeny and fitness of Vibrio fischeri from the light organs of Euprymna scolopes in two Oahu, Hawaii populations

Author keywords

biogeography; intraspecific; mutualism; phylogenetics; symbiosis

Indexed keywords

ADULT; BACTERIUM; BAY; CEPHALOPOD; COLONIZATION; DNA FINGERPRINTING; EVOLUTIONARY BIOLOGY; EXPERIMENTAL STUDY; FITNESS; HORIZONTAL TRANSMISSION; HOST-SYMBIONT INTERACTION; MUTUALISM; PHYLOGENETICS; PHYLOGENY; RECONSTRUCTION; SEAWATER; SURVIVAL; TAXONOMY; ZOOGEOGRAPHY;

EID: 84855978901     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2011.92     Document Type: Article
Times cited : (48)

References (47)
  • 2
    • 0025341353 scopus 로고
    • Depressed light emission by symbiotic Vibrio fischeri of the sepiolid squid Euprymna scolopes
    • Boettcher KJ, Ruby EG. (1990). Depressed light emission by symbiotic Vibrio fischeri of the sepiolid squid Euprymna scolopes. J Bacteriol 172: 3701-3706. (Pubitemid 20213346)
    • (1990) Journal of Bacteriology , vol.172 , Issue.7 , pp. 3701-3706
    • Boettcher, K.J.1    Ruby, E.G.2
  • 3
    • 79953283136 scopus 로고    scopus 로고
    • Contribution of rapid evolution of the luxR-luxI intergenic region to the diverse bioluminescence output of Vibrio fischeri strains isolated from different environments
    • Bose JL, Wollenberg MS, Colton DM, Mandel MJ, Septer AN, Dunn AK et al. (2011). Contribution of rapid evolution of the luxR-luxI intergenic region to the diverse bioluminescence output of Vibrio fischeri strains isolated from different environments. Appl Environ Microbiol 77: 2445-2457.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2445-2457
    • Bose, J.L.1    Wollenberg, M.S.2    Colton, D.M.3    Mandel, M.J.4    Septer, A.N.5    Dunn, A.K.6
  • 4
    • 79955758518 scopus 로고    scopus 로고
    • Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria
    • Cafaro MJ, Poulsen M, Little AE, Price SL, Gerardo NM, Wong B et al. (2010). Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria. Proc Biol Sci 278: 1814-1822.
    • (2010) Proc Biol Sci , vol.278 , pp. 1814-1822
    • Cafaro, M.J.1    Poulsen, M.2    Little, A.E.3    Price, S.L.4    Gerardo, N.M.5    Wong, B.6
  • 5
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • DOI 10.1534/genetics.106.063305
    • Didelot X, Falush D. (2007). Inference of bacterial microevolution using multilocus sequence data. Genetics 175: 1251-1266. (Pubitemid 46798228)
    • (2007) Genetics , vol.175 , Issue.3 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 6
    • 34848912651 scopus 로고    scopus 로고
    • Phylogenetic analysis of host-symbiont specificity and codivergence in bioluminescent symbioses
    • DOI 10.1111/j.1096-0031.2007.00157.x
    • Dunlap PV, Ast JC, Kimura H, Fukui A, Yoshino T, Endo H. (2007). Phylogenetic analysis of host-symbiont specificity and codivergence in bioluminescent symbioses. Cladistics 23: 507-532. (Pubitemid 47512278)
    • (2007) Cladistics , vol.23 , Issue.5 , pp. 507-532
    • Dunlap, P.V.1    Ast, J.C.2    Kimura, S.3    Fukui, A.4    Yoshino, T.5    Endo, H.6
  • 7
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • Dykhuizen DE, Green L. (1991). Recombination in Escherichia coli and the definition of biological species. J Bacteriol 173: 7257-7268.
    • (1991) J Bacteriol , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 8
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • Edgar RC. (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797. (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 9
    • 84972492387 scopus 로고
    • Inference from iterative simulation using multiple sequences
    • Gelman A, Rubin DB. (1992). Inference from iterative simulation using multiple sequences. Stat Sci 7: 457-472.
    • (1992) Stat Sci , vol.7 , pp. 457-472
    • Gelman, A.1    Rubin, D.B.2
  • 10
    • 34548727434 scopus 로고    scopus 로고
    • The importance of culturing bacterioplankton in the 'omics' age
    • DOI 10.1038/nrmicro1752, PII NRMICRO1752
    • Giovannoni S, Stingl U. (2007). The importance of culturing bacterioplankton in the 'omics' age. Nat Rev Microbiol 5: 820-826. (Pubitemid 47423770)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.10 , pp. 820-826
    • Giovannoni, S.1    Stingl, U.2
  • 11
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O. (2010). SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224.
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 13
    • 3042637206 scopus 로고    scopus 로고
    • Using consensus networks to visualize contradictory evidence for species phylogeny
    • DOI 10.1093/molbev/msh145
    • Holland BR, Huber KT, Moulton V, Lockhart PJ. (2004). Using consensus networks to visualize contradictory evidence for species phylogeny. Mol Biol Evol 21: 1459-1461. (Pubitemid 38823749)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.7 , pp. 1459-1461
    • Holland, B.R.1    Huber, K.T.2    Moulton, V.3    Lockhart, P.J.4
  • 14
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • DOI 10.1093/molbev/msj030
    • Huson DH, Bryant D. (2006). Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267. (Pubitemid 43100040)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 15
    • 34547565445 scopus 로고    scopus 로고
    • Spatial and temporal distribution of the Vibrionaceae in coastal waters of Hawaii, Australia, and France
    • DOI 10.1007/s00248-006-9204-z
    • Jones BW, Maruyama A, Ouverney CC, Nishiguchi MK. (2007). Spatial and temporal distribution of the Vibrionaceae in coastal waters of Hawaii, Australia, and France. Microb Ecol 54: 314-323. (Pubitemid 47197905)
    • (2007) Microbial Ecology , vol.54 , Issue.2 , pp. 314-323
    • Jones, B.W.1    Maruyama, A.2    Ouverney, C.C.3    Nishiguchi, M.K.4
  • 16
    • 0036379120 scopus 로고    scopus 로고
    • Two genetically distinct populations of bobtail squid, Euprymna scolopes, exist on the island of Oahu
    • Kimbell JR, McFall-Ngai MJ, Roderick GK. (2002). Two genetically distinct populations of bobtail squid, Euprymna scolopes, exist on the island of Oahu. Pac Science 56: 347-355.
    • (2002) Pac Science , vol.56 , pp. 347-355
    • Kimbell, J.R.1    McFall-Ngai, M.J.2    Roderick, G.K.3
  • 18
    • 0028878001 scopus 로고
    • Symbiotic role of the viable but nonculturable state of Vibrio fischeri in Hawaiian coastal seawater
    • Lee K, Ruby EG. (1995). Symbiotic role of the viable but nonculturable state of Vibrio fischeri in Hawaiian coastal seawater. Appl Environ Microbiol 61: 278-283.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 278-283
    • Lee, K.1    Ruby, E.G.2
  • 19
    • 0026550863 scopus 로고
    • Detection of the light organ symbiont, Vibrio fischeri, in Hawaiian seawater by using lux gene probes
    • Lee KH, Ruby EG. (1992). Detection of the light organ symbiont, Vibrio fischeri, in Hawaiian seawater by using lux gene probes. Appl Environ Microbiol 58: 942-947.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 942-947
    • Lee, K.H.1    Ruby, E.G.2
  • 21
    • 0028585707 scopus 로고
    • Effect of the squid host on the abundance and distribution of symbiotic Vibrio fischeri in nature
    • Lee KH, Ruby EG. (1994). Effect of the squid host on the abundance and distribution of symbiotic Vibrio fischeri in nature. Appl Environ Microbiol 60: 1565-1571. (Pubitemid 24144815)
    • (1994) Applied and Environmental Microbiology , vol.60 , Issue.5 , pp. 1565-1571
    • Lee, K.-H.1    Ruby, E.G.2
  • 22
    • 62249192807 scopus 로고    scopus 로고
    • A single regulatory gene is sufficient to alter bacterial host range
    • Mandel MJ, Wollenberg MS, Stabb EV, Visick KL, Ruby EG. (2009). A single regulatory gene is sufficient to alter bacterial host range. Nature 458: 215-218.
    • (2009) Nature , vol.458 , pp. 215-218
    • Mandel, M.J.1    Wollenberg, M.S.2    Stabb, E.V.3    Visick, K.L.4    Ruby, E.G.5
  • 23
    • 77958193585 scopus 로고    scopus 로고
    • Models and approaches to dissect host- symbiont specificity
    • Mandel MJ. (2010). Models and approaches to dissect host- symbiont specificity. Trends Microbiol 18: 504-511.
    • (2010) Trends Microbiol , vol.18 , pp. 504-511
    • Mandel, M.J.1
  • 24
    • 79955084765 scopus 로고    scopus 로고
    • Phylogenetic and cophylogenetic relationships of entomopathogenic nematodes (Heterorhabditis: Rhabditida) and their symbiotic bacteria (Photorhabdus: Enterobacteriaceae)
    • Maneesakorn P, An R, Daneshvar H, Taylor K, Bai X, Adams BJ et al. (2011). Phylogenetic and cophylogenetic relationships of entomopathogenic nematodes (Heterorhabditis: Rhabditida) and their symbiotic bacteria (Photorhabdus: Enterobacteriaceae). Mol Phylogenet Evol 59: 271-280.
    • (2011) Mol Phylogenet Evol , vol.59 , pp. 271-280
    • Maneesakorn, P.1    An, R.2    Daneshvar, H.3    Taylor, K.4    Bai, X.5    Adams, B.J.6
  • 25
    • 70249110818 scopus 로고    scopus 로고
    • Coevolution in Rhizobium- legume symbiosiš
    • Martínez-Romero E. (2009). Coevolution in Rhizobium- legume symbiosiš DNA Cell Biol 28: 361-370.
    • (2009) DNA Cell Biol , vol.28 , pp. 361-370
    • Martínez-Romero, E.1
  • 26
    • 0026357239 scopus 로고
    • Symbiont recognition and subsequent morphogenesis as early events in an animal-bacterial mutualism
    • McFall-Ngai MJ, Ruby EG. (1991). Symbiont recognition and subsequent morphogenesis as early events in an animal-bacterial mutualism. Science 254: 1491-1494. (Pubitemid 21917485)
    • (1991) Science , vol.254 , Issue.5037 , pp. 1491-1494
    • Mcfall-Ngai, M.J.1    Ruby, E.G.2
  • 27
    • 77955553995 scopus 로고    scopus 로고
    • Placement of attine ant-associated Pseudonocardia in a global Pseudonocardia phylogeny (Pseudonocardiaceae, Actinomycetales): A test of two symbiont-association models
    • Mueller UG, Ishak H, Lee JC, Sen R, Gutell RR. (2010). Placement of attine ant-associated Pseudonocardia in a global Pseudonocardia phylogeny (Pseudonocardiaceae, Actinomycetales): A test of two symbiont-association models. Antonie Van Leeuwenhoek 98: 195-212.
    • (2010) Antonie Van Leeuwenhoek , vol.98 , pp. 195-212
    • Mueller, U.G.1    Ishak, H.2    Lee, J.C.3    Sen, R.4    Gutell, R.R.5
  • 28
    • 0031715683 scopus 로고    scopus 로고
    • Competitive dominance among strains of luminous bacteria provides an unusual form of evidence for parallel evolution in sepiolid squid-vibrio symbioses
    • Nishiguchi MK, Ruby EG, McFall-Ngai MJ. (1998). Competitive dominance among strains of luminous bacteria provides an unusual form of evidence for parallel evolution in Sepiolid squid-Vibrio symbioses. Appl Environ Microbiol 64: 3209-3213. (Pubitemid 28411437)
    • (1998) Applied and Environmental Microbiology , vol.64 , Issue.9 , pp. 3209-3213
    • Nishiguchi, M.K.1    Ruby, E.G.2    McFall-Ngai, M.J.3
  • 29
    • 85047687623 scopus 로고    scopus 로고
    • Host-symbiont recognition in the environmentally transmitted sepiolid squid-vibrio mutualism
    • DOI 10.1007/s00248-002-0002-y
    • Nishiguchi MK. (2002). Host-symbiont recognition in the environmentally transmitted sepiolid squid-Vibrio mutualism. Microb Ecol 44: 10-18. (Pubitemid 36941082)
    • (2002) Microbial Ecology , vol.44 , Issue.1 , pp. 10-18
    • Nishiguchi, M.K.1
  • 30
    • 0036897674 scopus 로고    scopus 로고
    • Statistical properties of new neutrality tests against population growth
    • Ramos-Onsins SE, Rozas J. (2002). Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19: 2092-2100. (Pubitemid 35440445)
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.12 , pp. 2092-2100
    • Ramos-Onsins, S.E.1    Rozas, J.2
  • 31
    • 79951480123 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing: Vienna, Austria
    • R Development Core Team (2010). R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing: Vienna, Austria.
    • (2010) R: A Language and Environment for Statistical Computing
  • 33
    • 0042631342 scopus 로고    scopus 로고
    • Symbiodinium sp. associations in the gorgonian Pseudopterogorgia elisabethae in the Bahamas: High levels of genetic variability and population structure in symbiotic dinoflagellates
    • DOI 10.1007/s00227-003-1065-0
    • Santos SR, Gutiérrez-Rodríguez C, Lasker HR, Coffroth MA. (2003). Symbiodinium sp. associations in the gorgonian Pseudopterogorgia elisabethae in the Bahamas: High levels of genetic variability and population structure in symbiotic dinoflagellates. Marine Biol 143: 111-120. (Pubitemid 36967328)
    • (2003) Marine Biology , vol.143 , Issue.1 , pp. 111-120
    • Santos, S.R.1    Gutierrez-Rodriguez, C.2    Lasker, H.R.3    Coffroth, M.A.4
  • 34
    • 77955551789 scopus 로고    scopus 로고
    • Breaking the language barrier: Experimental evolution of non-native Vibrio fischeri in squid tailors luminescence to the host
    • Schuster BM, Perry LA, Cooper VS, Whistler CA. (2010). Breaking the language barrier: Experimental evolution of non-native Vibrio fischeri in squid tailors luminescence to the host. Symbiosis 51: 85-96.
    • (2010) Symbiosis , vol.51 , pp. 85-96
    • Schuster, B.M.1    Perry, L.A.2    Cooper, V.S.3    Whistler, C.A.4
  • 35
    • 4444232572 scopus 로고    scopus 로고
    • When mutualists are pathogens: An experimental study of the symbioses between Steinernema (entomopathogenic nematodes) and Xenorhabdus (bacteria)
    • DOI 10.1111/j.1420-9101.2004.00748.x
    • Sicard M, Ferdy JB, Pages S, Le Brun N, Godelle B, Boemare N et al. (2004). When mutualists are pathogens: An experimental study of the symbioses between Steinernema (entomopathogenic nematodes) and Xenorhabdus (bacteria). J Evol Biol 17: 985-993. (Pubitemid 39175166)
    • (2004) Journal of Evolutionary Biology , vol.17 , Issue.5 , pp. 985-993
    • Sicard, M.1    Ferdy, J.-B.2    Pages, S.3    Le Brun, N.4    Godelle, B.5    Boemare, N.6    Moulia, C.7
  • 36
    • 0029099781 scopus 로고
    • Properties of statistical tests of neutrality for DNA polymorphism data
    • Simonsen KL, Churchill GA, Aquadro CF. (1995). Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141: 413-429.
    • (1995) Genetics , vol.141 , pp. 413-429
    • Simonsen, K.L.1    Churchill, G.A.2    Aquadro, C.F.3
  • 37
    • 0037312939 scopus 로고    scopus 로고
    • Contribution of pilA to competitive colonization of the squid Euprymna scolopes by Vibrio fischeri
    • DOI 10.1128/AEM.69.2.820-826.2003
    • Stabb EV, Ruby EG. (2003). Contribution of pilA to competitive colonization of the squid Euprymna scolopes by Vibrio fischeri. Appl Environ Microbiol 69: 820-826. (Pubitemid 36204807)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.2 , pp. 820-826
    • Stabb, E.V.1    Ruby, E.G.2
  • 38
    • 79952635026 scopus 로고    scopus 로고
    • Is the V. fischeri-E. scolopes symbiosis a defensive mutualism?
    • In: White JF, Torres MS (eds), CRC Press: New York City
    • Stabb EV, Millikan DS. (2009). Is the V. fischeri-E. scolopes symbiosis a defensive mutualism?. In: White JF, Torres MS (eds) Defensive Mutualism in Microbial Symbiosis. CRC Press: New York City, pp 85-98.
    • (2009) Defensive Mutualism in Microbial Symbiosis , pp. 85-98
    • Stabb, E.V.1    Millikan, D.S.2
  • 40
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • Tajima F. (1989). The effect of change in population size on DNA polymorphism. Genetics 123: 597-601.
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 41
    • 0033037217 scopus 로고    scopus 로고
    • Evolutionary trade-offs under conditions of resource abundance and scarcity: Experiments with bacteria
    • Velicer GJ, Lenski RE. (1999). Evolutionary trade-offs under conditions of resource abundance and scarcity: Experiments with bacteria. Ecology 80: 1168-1179. (Pubitemid 29279921)
    • (1999) Ecology , vol.80 , Issue.4 , pp. 1168-1179
    • Velicer, G.J.1    Lenski, R.E.2
  • 42
    • 33751234924 scopus 로고    scopus 로고
    • Vibrio fischeri and its host: it takes two to tango
    • DOI 10.1016/j.mib.2006.10.001, PII S1369527406001536, Growth and Development
    • Visick KL, Ruby EG. (2006). Vibrio fischeri and its host: It takes two to tango. Curr Opin Microbiol 9: 632-638. (Pubitemid 44791984)
    • (2006) Current Opinion in Microbiology , vol.9 , Issue.6 , pp. 632-638
    • Visick, K.L.1    Ruby, E.G.2
  • 43
    • 33646586986 scopus 로고    scopus 로고
    • Genetic population structure of the soil bacterium Myxococcus xanthus at the centimeter scale
    • DOI 10.1128/AEM.72.5.3615-3625.2006
    • Vos M, Velicer GJ. (2006). Genetic population structure of the soil bacterium Myxococcus xanthus at the centimeter scale. Appl Environ Microbiol 72: 3615-3625. (Pubitemid 43728018)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.5 , pp. 3615-3625
    • Vos, M.1    Velicer, G.J.2
  • 44
    • 58549084151 scopus 로고    scopus 로고
    • A comparison of homologous recombination rates in bacteria and archaea
    • Vos M, Didelot X. (2009). A comparison of homologous recombination rates in bacteria and archaea. ISME J 3: 199-208.
    • (2009) ISME J. , vol.3 , pp. 199-208
    • Vos, M.1    Didelot, X.2
  • 45
    • 0024789746 scopus 로고
    • Development of symbiotic bacterial bioluminescence in a nearshore cephalopod, Euprymna scolopes
    • Wei SL, Young RE. (1989). Development of symbiotic bioluminescence in a nearshore cephalopod, Euprymna scolopes. Marine Biol 103: 541-546. (Pubitemid 20046271)
    • (1989) Marine Biology , vol.103 , Issue.4 , pp. 541-546
    • Wei, S.L.1    Young, R.E.2
  • 46
    • 76649111757 scopus 로고    scopus 로고
    • Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis
    • Wier AM, Nyholm SV, Mandel MJ, Massengo-Tiasse RP, Schaefer AL, Koroleva I et al. (2010). Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis. Proc Natl Acad Sci USA 107: 2259-2264.
    • (2010) Proc Natl Acad Sci US.A. , vol.107 , pp. 2259-2264
    • Wier, A.M.1    Nyholm, S.V.2    Mandel, M.J.3    Massengo-Tiasse, R.P.4    Schaefer, A.L.5    Koroleva, I.6
  • 47
    • 58149346180 scopus 로고    scopus 로고
    • Population structure of Vibrio fischeri within the light organs of Euprymna scolopes squid from two Oahu (Hawaii) populations
    • Wollenberg MS, Ruby EG. (2009). Population structure of Vibrio fischeri within the light organs of Euprymna scolopes squid from two Oahu (Hawaii) populations. Appl Environ Microbiol 75: 193-202.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 193-202
    • Wollenberg, M.S.1    Ruby, E.G.2


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