-
1
-
-
66549102207
-
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation
-
Antonopolos DA, et al. 2009. Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect. Immun. 77:2367-2375.
-
(2009)
Infect. Immun.
, vol.77
, pp. 2367-2375
-
-
Antonopolos, D.A.1
-
2
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection
-
doi:10.1038/msb4100050.
-
Baba T, et al. 2006. Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection. Mol. Syst. Biol. doi:10.1038/msb4100050.
-
(2006)
Mol. Syst. Biol.
-
-
Baba, T.1
-
3
-
-
0002739483
-
Derivations and genotypes of some mutant derivatives of Escherichia coli K-12
-
Neidhardt FC, et al (ed), ASM Press, Washington, DC
-
Bachmann BJ. 1996. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, p 2460-2488. In Neidhardt FC, et al (ed), Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, DC.
-
(1996)
Escherichia coli and Salmonella: cellular and molecular biology
, pp. 2460-2488
-
-
Bachmann, B.J.1
-
4
-
-
34547443884
-
Evidence for a signaling axis by which intestinal phosphate rapidly modulates renal phosphate reabsorption
-
Berndt T, et al. 2007. Evidence for a signaling axis by which intestinal phosphate rapidly modulates renal phosphate reabsorption. Proc. Natl. Acad. Sci. U. S. A. 104:11085-11090.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 11085-11090
-
-
Berndt, T.1
-
5
-
-
84925641917
-
The life of commensal Escherichia coli in the mammalian intestine
-
29 December, posting date. Chapter 8.3.1.2, Bock A, et al (ed), ASMPress, Washington, DC. doi:10.1128/ecosal.8.3.1.2
-
Conway T, Krogfelt KA, Cohen PS. 29 December 2004, posting date. Chapter 8.3.1.2, The life of commensal Escherichia coli in the mammalian intestine. In Bock A, et al (ed), EcoSal-Escherichia coli and Salmonella: cellular and molecular biology.ASMPress, Washington, DC. doi:10.1128/ecosal.8.3.1.2.
-
(2004)
EcoSal-Escherichia coli and Salmonella: cellular and molecular biology
-
-
Conway, T.1
Krogfelt, K.A.2
Cohen, P.S.3
-
6
-
-
0028363850
-
Control of the LexA regulon by pH: evidence for a reversible inactivation of the LexA repressor during the growth cycle of Escherichia coli
-
Dri A-M, Moreau PL. 1994. Control of the LexA regulon by pH: evidence for a reversible inactivation of the LexA repressor during the growth cycle of Escherichia coli. Mol. Microbiol. 12:621-629.
-
(1994)
Mol. Microbiol.
, vol.12
, pp. 621-629
-
-
Dri, A.-M.1
Moreau, P.L.2
-
7
-
-
34250208802
-
Genome-wide screening of genes affecting glycogen metabolism in Escherichia coli K-12
-
Eydallin G, et al. 2007. Genome-wide screening of genes affecting glycogen metabolism in Escherichia coli K-12. FEBS Lett. 581:2947-2953.
-
(2007)
FEBS Lett.
, vol.581
, pp. 2947-2953
-
-
Eydallin, G.1
-
8
-
-
42449118998
-
The spread of a beneficial mutation in experimental bacterial populations: the influence of the environment and genotype on the fixation of rpoS mutations
-
Ferenci T. 2008. The spread of a beneficial mutation in experimental bacterial populations: the influence of the environment and genotype on the fixation of rpoS mutations. Heredity 100:446-452.
-
(2008)
Heredity
, vol.100
, pp. 446-452
-
-
Ferenci, T.1
-
9
-
-
38949184271
-
Differential regulation of high-affinity phosphate transport systems of Mycobacterium smegmatis: identification of PhnF, a repressor of the phnDCE operon
-
Gebhard S, Cook GM. 2008. Differential regulation of high-affinity phosphate transport systems of Mycobacterium smegmatis: identification of PhnF, a repressor of the phnDCE operon. J. Bacteriol. 190:1335-1343.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1335-1343
-
-
Gebhard, S.1
Cook, G.M.2
-
10
-
-
0032815524
-
Role of Escherichia coli RpoS, LexA and H-NS global regulators in metabolism and survival under aerobic, phosphate-starvation conditions
-
Gérard F, Dri A-M, Moreau PL. 1999. Role of Escherichia coli RpoS, LexA and H-NS global regulators in metabolism and survival under aerobic, phosphate-starvation conditions. Microbiology 145:1547-1562.
-
(1999)
Microbiology
, vol.145
, pp. 1547-1562
-
-
Gérard, F.1
Dri, A.-M.2
Moreau, P.L.3
-
11
-
-
49449097288
-
Fur-dependent detoxification of organic acids by rpoS mutants during prolonged incubation under aerobic, phosphate starvation conditions
-
Guillemet ML, Moreau PL. 2008. Fur-dependent detoxification of organic acids by rpoS mutants during prolonged incubation under aerobic, phosphate starvation conditions. J. Bacteriol. 190:5567-5575.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 5567-5575
-
-
Guillemet, M.L.1
Moreau, P.L.2
-
12
-
-
0036399823
-
How host-microbial interaction shape the nutrient environment of the mammalian intestine
-
Hooper LV, Midtvedt T, Gordon JI. 2002. How host-microbial interaction shape the nutrient environment of the mammalian intestine. Annu. Rev. Nutr. 22:283-307.
-
(2002)
Annu. Rev. Nutr.
, vol.22
, pp. 283-307
-
-
Hooper, L.V.1
Midtvedt, T.2
Gordon, J.I.3
-
13
-
-
77949915670
-
Global regulation by the seven-component Pi signaling system
-
Hsieh H-J, Wanner BL. 2010. Global regulation by the seven-component Pi signaling system. Curr. Opin. Microbiol. 13:198-203.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 198-203
-
-
Hsieh, H.-J.1
Wanner, B.L.2
-
14
-
-
4444325284
-
Reversible phase variation in the phnE gene, which is required for phosphonates metabolism in Escherichia coli
-
Iqbal S, Parker G, Davidson H, Moslehi-Rahmani E, Robson RL. 2004. Reversible phase variation in the phnE gene, which is required for phosphonates metabolism in Escherichia coli. J. Bacteriol. 186:6118-6123.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6118-6123
-
-
Iqbal, S.1
Parker, G.2
Davidson, H.3
Moslehi-Rahmani, E.4
Robson, R.L.5
-
15
-
-
79960983742
-
Five phosphonate operon gene products as components of a multi-subunit complex of the carbon-phosphorus lyase pathway
-
Jochimsen BJ, et al. 2011. Five phosphonate operon gene products as components of a multi-subunit complex of the carbon-phosphorus lyase pathway. Proc. Natl. Acad. Sci. U. S. A. 108:11393-11398.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 11393-11398
-
-
Jochimsen, B.J.1
-
16
-
-
34848843063
-
Respiration of Escherichia coli in the mouse intestine
-
Jones SA, et al. 2007. Respiration of Escherichia coli in the mouse intestine. Infect. Immun. 75:4891-4899.
-
(2007)
Infect. Immun.
, vol.75
, pp. 4891-4899
-
-
Jones, S.A.1
-
17
-
-
0025730336
-
Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli
-
Makino K, Kim SK, Shinagawa H, Amemura M, Nakata A. 1991. Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli. J. Bacteriol. 173:2665-2672.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 2665-2672
-
-
Makino, K.1
Kim, S.K.2
Shinagawa, H.3
Amemura, M.4
Nakata, A.5
-
18
-
-
0026067796
-
Involvement of the Escherichia coli phn (psiD) gene cluster in assimilation of phosphorus in the form of phosphonates, phosphite, Pi esters, and Pi
-
Metcalf WW, Wanner BL. 1991. Involvement of the Escherichia coli phn (psiD) gene cluster in assimilation of phosphorus in the form of phosphonates, phosphite, Pi esters, and Pi. J. Bacteriol. 173:587-600.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 587-600
-
-
Metcalf, W.W.1
Wanner, B.L.2
-
19
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller JH. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1972)
Experiments in molecular genetics
-
-
Miller, J.H.1
-
20
-
-
6044232024
-
Diversion of the metabolic flux from pyruvate dehydrogenase to pyruvate oxidase decreases oxidative stress during glucose metabolism in nongrowing Escherichia coli cells incubated under aerobic, phosphate starvation conditions
-
Moreau PL. 2004. Diversion of the metabolic flux from pyruvate dehydrogenase to pyruvate oxidase decreases oxidative stress during glucose metabolism in nongrowing Escherichia coli cells incubated under aerobic, phosphate starvation conditions. J. Bacteriol. 186:7364-7368.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7364-7368
-
-
Moreau, P.L.1
-
21
-
-
33947136225
-
The lysine decarboxylase CadA protects Escherichia coli starved of phosphate against fermentation acids
-
Moreau PL. 2007. The lysine decarboxylase CadA protects Escherichia coli starved of phosphate against fermentation acids. J. Bacteriol. 189:2249-2261.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2249-2261
-
-
Moreau, P.L.1
-
22
-
-
0035113637
-
Non-growing Escherichia coli cells starved for glucose or phosphate use different mechanisms to survive oxidative stress
-
Moreau PL, Gérard F, Lutz NW, Cozzone P. 2001. Non-growing Escherichia coli cells starved for glucose or phosphate use different mechanisms to survive oxidative stress. Mol. Microbiol. 39:1048-1060.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 1048-1060
-
-
Moreau, P.L.1
Gérard, F.2
Lutz, N.W.3
Cozzone, P.4
-
23
-
-
9244230099
-
Stationary-phase physiology
-
Nyström T. 2004. Stationary-phase physiology. Annu. Rev. Microbiol. 58:161-181.
-
(2004)
Annu. Rev. Microbiol.
, vol.58
, pp. 161-181
-
-
Nyström, T.1
-
24
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO. 2007. Development of the human infant intestinal microbiota. PLoS Biol. 5:e177.
-
(2007)
PLoS Biol.
, vol.5
-
-
Palmer, C.1
Bik, E.M.2
DiGiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
25
-
-
53849104729
-
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
-
Rasko DA, et al. 2008. The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J. Bacteriol. 190:6881-6893.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 6881-6893
-
-
Rasko, D.A.1
-
26
-
-
33745712494
-
Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates
-
Rizk SS, Cuneo MJ, Hellinga HW. 2006. Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates. Prot. Sci. 15:1745-1751.
-
(2006)
Prot. Sci.
, vol.15
, pp. 1745-1751
-
-
Rizk, S.S.1
Cuneo, M.J.2
Hellinga, H.W.3
-
27
-
-
1842471052
-
The multifactorial influences of RpoS, Mlc and cAMP on ptsG expression under glucose-limited and anaerobic conditions
-
Seeto S, Notley-McRobb L, Ferenci T. 2004. The multifactorial influences of RpoS, Mlc and cAMP on ptsG expression under glucose-limited and anaerobic conditions. Res. Microbiol. 155:211-215.
-
(2004)
Res. Microbiol.
, vol.155
, pp. 211-215
-
-
Seeto, S.1
Notley-McRobb, L.2
Ferenci, T.3
-
28
-
-
0041335300
-
Physiological studies of Escherichia coli strain MG1655: growth defects and apparent cross-regulation of gene expression
-
Soupene E, et al. 2003. Physiological studies of Escherichia coli strain MG1655: growth defects and apparent cross-regulation of gene expression. J. Bacteriol. 185:5611-5626.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5611-5626
-
-
Soupene, E.1
-
29
-
-
36348992043
-
s levels and rpoS polymorphisms in different Escherichia coli strains
-
s levels and rpoS polymorphisms in different Escherichia coli strains. Arch. Microbiol. 189:43-47.
-
(2008)
Arch. Microbiol.
, vol.189
, pp. 43-47
-
-
Spira, B.1
Ferenci, T.2
-
30
-
-
77955577539
-
Requirement of purine and pyrimidine synthesis for colonization of the mouse intestine by Escherichia coli
-
Vogel-Scheel J, Alpert C, Engst W, Loh G, Blaut M. 2010. Requirement of purine and pyrimidine synthesis for colonization of the mouse intestine by Escherichia coli. Appl. Environ. Microbiol. 76:5181-5187.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 5181-5187
-
-
Vogel-Scheel, J.1
Alpert, C.2
Engst, W.3
Loh, G.4
Blaut, M.5
-
31
-
-
77958493094
-
Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation
-
Wang L, et al. 2010. Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation. Genome Biol. Evol. 2:478-487.
-
(2010)
Genome Biol. Evol.
, vol.2
, pp. 478-487
-
-
Wang, L.1
-
32
-
-
0003338719
-
Phosphorus assimilation and control of the phosphate regulon
-
Neidhardt FC, et al (ed), ASM Press, Washington, DC
-
Wanner BL. 1996. Phosphorus assimilation and control of the phosphate regulon, p 1357-1381. In Neidhardt FC, et al (ed), Escherichia coli and Salmonella: cellular and molecular biology. ASM Press, Washington, DC.
-
(1996)
Escherichia coli and Salmonella: cellular and molecular biology
, pp. 1357-138
-
-
Wanner, B.L.1
-
33
-
-
0025238784
-
Mapping and molecular cloning of the phn (psiD) locus for phosphonate utilization in Escherichia coli
-
Wanner BL, Boline JA. 1990. Mapping and molecular cloning of the phn (psiD) locus for phosphonate utilization in Escherichia coli. J. Bacteriol. 172:1186-1196.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 1186-1196
-
-
Wanner, B.L.1
Boline, J.A.2
-
34
-
-
14244256556
-
s-dependent genes, promoters, and sigma factor selectivity
-
s-dependent genes, promoters, and sigma factor selectivity. J. Bacteriol. 187:1591-1603.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1591-1603
-
-
Weber, H.1
Polen, T.2
Heuveling, J.3
Wendisch, V.F.4
Hengge, R.5
-
35
-
-
35848942616
-
Microbial metabolism of reduced phosphorus compounds
-
White AK, Metcalf WW. 2007. Microbial metabolism of reduced phosphorus compounds. Annu. Rev. Microbiol. 61:379-400.
-
(2007)
Annu. Rev. Microbiol.
, vol.61
, pp. 379-400
-
-
White, A.K.1
Metcalf, W.W.2
-
37
-
-
1542513850
-
Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota
-
Young VB, Schmidt TM. 2004. Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota. J. Clin. Microbiol. 42:1203-1206.
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 1203-1206
-
-
Young, V.B.1
Schmidt, T.M.2
-
38
-
-
0027510647
-
Microbial competition: Escherichia coli mutants that take over stationary phase cultures
-
Zambrano MM, Siegele DA, Almiron M, Tormo A, Kolter R. 1993. Microbial competition: Escherichia coli mutants that take over stationary phase cultures. Science 259:1757-1760.
-
(1993)
Science
, vol.259
, pp. 1757-1760
-
-
Zambrano, M.M.1
Siegele, D.A.2
Almiron, M.3
Tormo, A.4
Kolter, R.5
|