-
1
-
-
33749150995
-
Mycobacterial transcriptional signals: Requirements for recognition by RNA polymerase and optimal transcriptional activity
-
Agarwal, N., and A. K. Tyagi. 2006. Mycobacterial transcriptional signals: requirements for recognition by RNA polymerase and optimal transcriptional activity. Nucleic Acids Res. 34:4245-4257.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4245-4257
-
-
Agarwal, N.1
Tyagi, A.K.2
-
2
-
-
0038664315
-
HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold
-
Aravind, L., and V. Anantharaman. 2003. HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold. FEMS Microbiol. Lett. 222:17-23.
-
(2003)
FEMS Microbiol. Lett
, vol.222
, pp. 17-23
-
-
Aravind, L.1
Anantharaman, V.2
-
3
-
-
0029744179
-
A phosphate transport system is required for symbiotic nitrogen fixation by Rhizobium meliloti
-
Bardin, S., S. Dan, M. Osteras, and T. M. Finan. 1996. A phosphate transport system is required for symbiotic nitrogen fixation by Rhizobium meliloti. J. Bacteriol. 178:4540-4547.
-
(1996)
J. Bacteriol
, vol.178
, pp. 4540-4547
-
-
Bardin, S.1
Dan, S.2
Osteras, M.3
Finan, T.M.4
-
4
-
-
0032420333
-
JPred: A consensus secondary structure prediction server
-
Cuff, J. A., M. E. Clamp, A. S. Siddiqui, M. Finlay, and G. J. Barton. 1998. JPred: a consensus secondary structure prediction server. Bioinformatics 14:892-893.
-
(1998)
Bioinformatics
, vol.14
, pp. 892-893
-
-
Cuff, J.A.1
Clamp, M.E.2
Siddiqui, A.S.3
Finlay, M.4
Barton, G.J.5
-
5
-
-
33750953585
-
The Phn system of Mycobacterium smegmatis: A second high-affinity ABC-transporter for phosphate
-
Gebhard, S., S. L. Tran, and G. M. Cook. 2006. The Phn system of Mycobacterium smegmatis: a second high-affinity ABC-transporter for phosphate. Microbiology 152:3453-3465.
-
(2006)
Microbiology
, vol.152
, pp. 3453-3465
-
-
Gebhard, S.1
Tran, S.L.2
Cook, G.M.3
-
6
-
-
34547618274
-
-
Glover, R. T., J. Kriakov, S. J. Garforth, A. D. Baughn, and W. R. Jacobs, Jr. 2007. The two-component regulatory system senX3-regX3 regulates phosphate-dependent gene expression in Mycobacterium smegmatis. J. Bacteriol. 189:5495-5503.
-
Glover, R. T., J. Kriakov, S. J. Garforth, A. D. Baughn, and W. R. Jacobs, Jr. 2007. The two-component regulatory system senX3-regX3 regulates phosphate-dependent gene expression in Mycobacterium smegmatis. J. Bacteriol. 189:5495-5503.
-
-
-
-
7
-
-
0030064660
-
A novel method for the isolation of mycobacterial DNA
-
Gonzalez-y-Merchand, J. A., I. Estrada-Garcia, M. J. Colston, and R. A. Cox. 1996. A novel method for the isolation of mycobacterial DNA. FEMS Microbiol. Lett. 135:71-77.
-
(1996)
FEMS Microbiol. Lett
, vol.135
, pp. 71-77
-
-
Gonzalez-y-Merchand, J.A.1
Estrada-Garcia, I.2
Colston, M.J.3
Cox, R.A.4
-
8
-
-
33744473327
-
Structural characterization of GntR/HutC family signaling domain
-
Gorelik, M., V. V. Lunin, T. Skarina, and A. Savchenko. 2006. Structural characterization of GntR/HutC family signaling domain. Protein Sci. 15: 1506-1511.
-
(2006)
Protein Sci
, vol.15
, pp. 1506-1511
-
-
Gorelik, M.1
Lunin, V.V.2
Skarina, T.3
Savchenko, A.4
-
9
-
-
38949105095
-
-
Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
-
Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
-
-
-
-
10
-
-
0026038362
-
Plasmid transformation of Escherichia coli and other bacteria
-
Hanahan, D., J. Jessee, and F. R. Bloom. 1991. Plasmid transformation of Escherichia coli and other bacteria. Methods Enzymol. 204:63-113.
-
(1991)
Methods Enzymol
, vol.204
, pp. 63-113
-
-
Hanahan, D.1
Jessee, J.2
Bloom, F.R.3
-
11
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho, S. N., H. D. Hunt, R. M. Horton, J. K. Pullen, and L. R. Pease. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51-59.
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
12
-
-
33745906951
-
DevA, a GntR-like transcriptional regulator required for development in Streptomyces coelicolor
-
Hoskisson, P. A., S. Rigali, K. Fowler, K. C. Findlay, and M. J. Buttner. 2006. DevA, a GntR-like transcriptional regulator required for development in Streptomyces coelicolor. J. Bacteriol. 188:5014-5023.
-
(2006)
J. Bacteriol
, vol.188
, pp. 5014-5023
-
-
Hoskisson, P.A.1
Rigali, S.2
Fowler, K.3
Findlay, K.C.4
Buttner, M.J.5
-
13
-
-
0003185716
-
Complex phosphate regulation by sequential switches in Bacillus subtilis
-
J. A. Hoch and T. J. Silhavy ed, American Society for Microbiology, Washington, DC
-
Hulett, F. M. 1995. Complex phosphate regulation by sequential switches in Bacillus subtilis, p. 298-302. In J. A. Hoch and T. J. Silhavy (ed.), Two-component signal transduction. American Society for Microbiology, Washington, DC.
-
(1995)
Two-component signal transduction
, pp. 298-302
-
-
Hulett, F.M.1
-
14
-
-
6944252215
-
The complete genomic sequence of Nocardia farcinica IFM 10152
-
Ishikawa, J., A. Yamashita, Y. Mikami, Y. Hoshino, H. Kurita, K. Hotta, T. Shiba, and M. Hattori. 2004. The complete genomic sequence of Nocardia farcinica IFM 10152. Proc. Natl. Acad. Sci. USA 101:14925-14930.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 14925-14930
-
-
Ishikawa, J.1
Yamashita, A.2
Mikami, Y.3
Hoshino, Y.4
Kurita, H.5
Hotta, K.6
Shiba, T.7
Hattori, M.8
-
15
-
-
0042532056
-
-
Kriakov, J., S. Lee, and W. R. Jacobs, Jr. 2003. Identification of a regulated alkaline phosphatase, a cell surface-associated lipoprotein, in Mycobacterium smegmatis. J. Bacteriol. 185:4983-4991.
-
Kriakov, J., S. Lee, and W. R. Jacobs, Jr. 2003. Identification of a regulated alkaline phosphatase, a cell surface-associated lipoprotein, in Mycobacterium smegmatis. J. Bacteriol. 185:4983-4991.
-
-
-
-
16
-
-
0026323938
-
Site-specific integration of mycobacteriophage L5: Integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guerin
-
Lee, M. H., L. Pascopella, W. R. Jacobs, Jr., and G. F. Hatfull. 1991. Site-specific integration of mycobacteriophage L5: integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guerin. Proc. Natl. Acad. Sci. USA 88:3111-3115.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 3111-3115
-
-
Lee, M.H.1
Pascopella, L.2
Jacobs Jr., W.R.3
Hatfull, G.F.4
-
17
-
-
8244238391
-
Three different putative phosphate transport receptors are encoded by the Mycobacterium tuberculosis genome and are present at the surface of Mycobacterium bovis BCG
-
Lefèvre, P., M. Braibant, L. de Wit, M. Kalai, D. Roeper, J. Grotzinger, J. P. Delville, P. Peirs, J. Ooms, K. Huygen, and J. Content. 1997. Three different putative phosphate transport receptors are encoded by the Mycobacterium tuberculosis genome and are present at the surface of Mycobacterium bovis BCG. J. Bacteriol. 179:2900-2906.
-
(1997)
J. Bacteriol
, vol.179
, pp. 2900-2906
-
-
Lefèvre, P.1
Braibant, M.2
de Wit, L.3
Kalai, M.4
Roeper, D.5
Grotzinger, J.6
Delville, J.P.7
Peirs, P.8
Ooms, J.9
Huygen, K.10
Content, J.11
-
18
-
-
3242887157
-
CD-search: Protein domain annotations on the fly
-
Marchler-Bauer, A., and S. H. Bryant. 2004. CD-search: protein domain annotations on the fly. Nucleic Acids Res. 32:W327-W331.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
19
-
-
0027244956
-
Nonpolar mutagenesis of the ipa genes defines IpaB, IpaC, and IpaD as effectors of Shigella flexneri entry into epithelial cells
-
Ménard, R., P. J. Sansonetti, and C. Parsot. 1993. Nonpolar mutagenesis of the ipa genes defines IpaB, IpaC, and IpaD as effectors of Shigella flexneri entry into epithelial cells. J. Bacteriol. 175:5899-5906.
-
(1993)
J. Bacteriol
, vol.175
, pp. 5899-5906
-
-
Ménard, R.1
Sansonetti, P.J.2
Parsot, C.3
-
21
-
-
0027262172
-
Mutational analysis of an Escherichia coli fourteen-gene operon for phosphonate degradation, using TnphoA′ elements
-
Metcalf, W. W., and B. L. Wanner. 1993. Mutational analysis of an Escherichia coli fourteen-gene operon for phosphonate degradation, using TnphoA′ elements. J. Bacteriol. 175:3430-3442.
-
(1993)
J. Bacteriol
, vol.175
, pp. 3430-3442
-
-
Metcalf, W.W.1
Wanner, B.L.2
-
22
-
-
0031740750
-
Molecular genetic analysis of phosphite and hypophosphite oxidation by Pseudomonas stutzeri WM88
-
Metcalf, W. W., and R. S. Wolfe. 1998. Molecular genetic analysis of phosphite and hypophosphite oxidation by Pseudomonas stutzeri WM88. J. Bacteriol. 180:5547-5558.
-
(1998)
J. Bacteriol
, vol.180
, pp. 5547-5558
-
-
Metcalf, W.W.1
Wolfe, R.S.2
-
23
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1972)
Experiments in molecular genetics
-
-
Miller, J.H.1
-
25
-
-
20144371065
-
Mycobacterium tuberculosis with disruption in genes encoding the phosphate binding proteins PstS1 and PstS2 is deficient in phosphate uptake and demonstrates reduced in vivo virulence
-
Peirs, P., P. Lefèvre, S. Boarbi, X. M. Wang, O. Denis, M. Braibant, K. Pethe, C. Locht, K. Huygen, and J. Content. 2005. Mycobacterium tuberculosis with disruption in genes encoding the phosphate binding proteins PstS1 and PstS2 is deficient in phosphate uptake and demonstrates reduced in vivo virulence. Infect. Immun. 73:1898-1902.
-
(2005)
Infect. Immun
, vol.73
, pp. 1898-1902
-
-
Peirs, P.1
Lefèvre, P.2
Boarbi, S.3
Wang, X.M.4
Denis, O.5
Braibant, M.6
Pethe, K.7
Locht, C.8
Huygen, K.9
Content, J.10
-
26
-
-
0030961089
-
Efficient allelic exchange and transposon mutagenesis in Mycobacterium tuberculosis
-
Pelicic, V., M. Jackson, J. M. Reyrat, W. R. Jacobs, Jr., B. Gicquel, and C. Guilhot. 1997. Efficient allelic exchange and transposon mutagenesis in Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. USA 94:10955-10960.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 10955-10960
-
-
Pelicic, V.1
Jackson, M.2
Reyrat, J.M.3
Jacobs Jr., W.R.4
Gicquel, B.5
Guilhot, C.6
-
27
-
-
0037066712
-
-
Rigali, S., A. Derouaux, F. Giannotta, and J. Dusart. 2002. Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies. J. Biol. Chem. 277:12507-12515.
-
Rigali, S., A. Derouaux, F. Giannotta, and J. Dusart. 2002. Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies. J. Biol. Chem. 277:12507-12515.
-
-
-
-
28
-
-
3242674438
-
Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships
-
Rigali, S., M. Schlicht, P. Hoskisson, H. Nothaft, M. Merzbacher, B. Joris, and F. Titgemeyer. 2004. Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships. Nucleic Acids Res. 32:3418-3426.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3418-3426
-
-
Rigali, S.1
Schlicht, M.2
Hoskisson, P.3
Nothaft, H.4
Merzbacher, M.5
Joris, B.6
Titgemeyer, F.7
-
29
-
-
33947415761
-
Identification of mycobacterial σ factor binding sites by chromatin immunoprecipitation assays
-
Rodrigue, S., J. Brodeur, P. E. Jacques, A. L. Gervais, R. Brzezinski, and L. Gaudreau. 2007. Identification of mycobacterial σ factor binding sites by chromatin immunoprecipitation assays. J. Bacteriol. 189:1505-1513.
-
(2007)
J. Bacteriol
, vol.189
, pp. 1505-1513
-
-
Rodrigue, S.1
Brodeur, J.2
Jacques, P.E.3
Gervais, A.L.4
Brzezinski, R.5
Gaudreau, L.6
-
30
-
-
0031872416
-
A developmentally regulated gene encoding a repressor-like protein is essential for sporulation in Streptomyces coelicolor A3(2)
-
Ryding, N. J., G. H. Kelemen, C. A. Whatling, K. Flardh, M. J. Buttner, and K. F. Chater. 1998. A developmentally regulated gene encoding a repressor-like protein is essential for sporulation in Streptomyces coelicolor A3(2). Mol. Microbiol. 29:343-357.
-
(1998)
Mol. Microbiol
, vol.29
, pp. 343-357
-
-
Ryding, N.J.1
Kelemen, G.H.2
Whatling, C.A.3
Flardh, K.4
Buttner, M.J.5
Chater, K.F.6
-
31
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: A laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
32
-
-
0025081151
-
-
Snapper, S. B., R. E. Melton, S. Mustafa, T. Kieser, and W. R. Jacobs, Jr. 1990. Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol. Microbiol. 4:1911-1919.
-
Snapper, S. B., R. E. Melton, S. Mustafa, T. Kieser, and W. R. Jacobs, Jr. 1990. Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol. Microbiol. 4:1911-1919.
-
-
-
-
33
-
-
19944370498
-
Binding of PhoP to promoters of phosphate-regulated genes in Streptomyces coelicolor: Identification of PHO boxes
-
Sola-Landa, A., A. Rodriguez-Garcia, E. Franco-Dominguez, and J. F. Martin. 2005. Binding of PhoP to promoters of phosphate-regulated genes in Streptomyces coelicolor: identification of PHO boxes. Mol. Microbiol. 56: 1373-1385.
-
(2005)
Mol. Microbiol
, vol.56
, pp. 1373-1385
-
-
Sola-Landa, A.1
Rodriguez-Garcia, A.2
Franco-Dominguez, E.3
Martin, J.F.4
-
34
-
-
0028079877
-
Escherichia coli-mycobacteria shuttle vectors for operon and gene fusions to lacZ: The pJEM series
-
Timm, J., E. M. Lim, and B. Gicquel. 1994. Escherichia coli-mycobacteria shuttle vectors for operon and gene fusions to lacZ: the pJEM series. J. Bacteriol. 176:6749-6753.
-
(1994)
J. Bacteriol
, vol.176
, pp. 6749-6753
-
-
Timm, J.1
Lim, E.M.2
Gicquel, B.3
-
35
-
-
0034982194
-
Molecular analysis of Mycobacterium tuberculosis phosphate specific transport system in Mycobacterium smegmatis. Characterization of recombinant 38 kDa (PstS-1)
-
Torres, A., M. D. Juarez, R. Cervantes, and C. Espitia. 2001. Molecular analysis of Mycobacterium tuberculosis phosphate specific transport system in Mycobacterium smegmatis. Characterization of recombinant 38 kDa (PstS-1). Microb. Pathog. 30:289-297.
-
(2001)
Microb. Pathog
, vol.30
, pp. 289-297
-
-
Torres, A.1
Juarez, M.D.2
Cervantes, R.3
Espitia, C.4
-
36
-
-
15844364568
-
Mutants of Mycobacterium smegmatis unable to grow at acidic pH in the presence of the protonophore carbonyl cyanide m-chlorophenylhydrazone
-
Tran, S. L., M. Rao, C. Simmers, S. Gebhard, K. Olsson, and G. M. Cook. 2005. Mutants of Mycobacterium smegmatis unable to grow at acidic pH in the presence of the protonophore carbonyl cyanide m-chlorophenylhydrazone. Microbiology 151:665-672.
-
(2005)
Microbiology
, vol.151
, pp. 665-672
-
-
Tran, S.L.1
Rao, M.2
Simmers, C.3
Gebhard, S.4
Olsson, K.5
Cook, G.M.6
-
37
-
-
0030722964
-
Phosphate transport in prokaryotes: Molecules, mediators and mechanisms
-
van Veen, H. W. 1997. Phosphate transport in prokaryotes: molecules, mediators and mechanisms. Antonie van Leeuwenhoek 72:299-315.
-
(1997)
Antonie van Leeuwenhoek
, vol.72
, pp. 299-315
-
-
van Veen, H.W.1
-
38
-
-
35748947762
-
GntR family of regulators in Mycobacterium smegmatis: A sequence and structure based characterization
-
Vindal, V., K. Suma, and A. Ranjan. 2007. GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization. BMC Genomics 8:289.
-
(2007)
BMC Genomics
, vol.8
, pp. 289
-
-
Vindal, V.1
Suma, K.2
Ranjan, A.3
-
39
-
-
38949088590
-
-
Wanner, B. L. 1996. Phosphorus assimilation and control of the phosphate regulon, p. 1357-1381. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., 1. ASM Press, Washington, DC.
-
Wanner, B. L. 1996. Phosphorus assimilation and control of the phosphate regulon, p. 1357-1381. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 1. ASM Press, Washington, DC.
-
-
-
-
40
-
-
3042815976
-
Two C-P lyase operons in Pseudomonas stutzeri and their roles in the oxidation of phosphonates, phosphite, and hypophosphite
-
White, A. K., and W. W. Metcalf. 2004. Two C-P lyase operons in Pseudomonas stutzeri and their roles in the oxidation of phosphonates, phosphite, and hypophosphite. J. Bacteriol. 186:4730-4739.
-
(2004)
J. Bacteriol
, vol.186
, pp. 4730-4739
-
-
White, A.K.1
Metcalf, W.W.2
-
41
-
-
31344431823
-
Regulation and properties of PstSCAB, a high-affinity, high-velocity phosphate transport system of Sinorhizobium meliloti
-
Yuan, Z. C., R. Zaheer, and T. M. Finan. 2006. Regulation and properties of PstSCAB, a high-affinity, high-velocity phosphate transport system of Sinorhizobium meliloti. J. Bacteriol. 188:1089-1102.
-
(2006)
J. Bacteriol
, vol.188
, pp. 1089-1102
-
-
Yuan, Z.C.1
Zaheer, R.2
Finan, T.M.3
|