메뉴 건너뛰기




Volumn 13, Issue 1, 2012, Pages

Centromere-associated repeat arrays on Trypanosoma brucei chromosomes are much more extensive than predicted

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL CHROMOSOME; CENTROMERE; CHROMOSOME 1; CHROMOSOME 5; CHROMOSOME 7; CHROMOSOME SEGREGATION; CHROMOSOME SIZE; CHROMOSOME STRUCTURE; CONTROLLED STUDY; EPIGENETICS; GENETIC HETEROGENEITY; GENETIC VARIABILITY; NONHUMAN; RESTRICTION MAPPING; SEQUENCE HOMOLOGY; TRYPANOSOMA BRUCEI; DNA MICROARRAY; GENETICS; GENOME; TANDEM REPEAT;

EID: 84855901677     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-29     Document Type: Article
Times cited : (21)

References (44)
  • 1
    • 0031443670 scopus 로고    scopus 로고
    • Molecular structure of a functional Drosophila centromere
    • 10.1016/S0092-8674(00)80491-2, 3209480, 9428523
    • Sun X, Wahlstrom J, Karpen G. Molecular structure of a functional Drosophila centromere. Cell 1997, 91:1007-1019. 10.1016/S0092-8674(00)80491-2, 3209480, 9428523.
    • (1997) Cell , vol.91 , pp. 1007-1019
    • Sun, X.1    Wahlstrom, J.2    Karpen, G.3
  • 2
    • 0035432975 scopus 로고    scopus 로고
    • Determining centromere identity: cyclical stories and forking paths
    • 10.1038/35084512, 11483983
    • Sullivan BA, Blower MD, Karpen GH. Determining centromere identity: cyclical stories and forking paths. Nat Rev Genet 2001, 2:584-596. 10.1038/35084512, 11483983.
    • (2001) Nat Rev Genet , vol.2 , pp. 584-596
    • Sullivan, B.A.1    Blower, M.D.2    Karpen, G.H.3
  • 3
    • 33847030761 scopus 로고    scopus 로고
    • Plant centromere organization: a dynamic structure with conserved functions
    • 10.1016/j.tig.2007.01.004, 17275131
    • Ma J, Wing RA, Bennetzen JL, Jackson SA. Plant centromere organization: a dynamic structure with conserved functions. Trends Genet 2007, 23:134-139. 10.1016/j.tig.2007.01.004, 17275131.
    • (2007) Trends Genet , vol.23 , pp. 134-139
    • Ma, J.1    Wing, R.A.2    Bennetzen, J.L.3    Jackson, S.A.4
  • 4
    • 0035812788 scopus 로고    scopus 로고
    • Genomic and genetic definition of a functional human centromere
    • 10.1126/science.1065042, 11588252
    • Schueler MG, Higgins AW, Rudd MK, Gustashaw K, Willard HF. Genomic and genetic definition of a functional human centromere. Science 2001, 294:109-115. 10.1126/science.1065042, 11588252.
    • (2001) Science , vol.294 , pp. 109-115
    • Schueler, M.G.1    Higgins, A.W.2    Rudd, M.K.3    Gustashaw, K.4    Willard, H.F.5
  • 5
    • 7444271429 scopus 로고    scopus 로고
    • Evolutionary dynamics of transposable elements at the centromere
    • 10.1016/j.tig.2004.09.011, 15522456
    • Wong LH, Choo KH. Evolutionary dynamics of transposable elements at the centromere. Trends Genet 2004, 20:611-616. 10.1016/j.tig.2004.09.011, 15522456.
    • (2004) Trends Genet , vol.20 , pp. 611-616
    • Wong, L.H.1    Choo, K.H.2
  • 6
    • 0035839066 scopus 로고    scopus 로고
    • The centromere paradox: Stable inheritance with rapidly evolving DNA
    • 10.1126/science.1062939, 11498581
    • Henikoff S, Ahmad K, Malik HS. The centromere paradox: Stable inheritance with rapidly evolving DNA. Science 2001, 293:1098-1102. 10.1126/science.1062939, 11498581.
    • (2001) Science , vol.293 , pp. 1098-1102
    • Henikoff, S.1    Ahmad, K.2    Malik, H.S.3
  • 7
    • 0036889219 scopus 로고    scopus 로고
    • Conflict begets complexity: the evolution of centromeres
    • 10.1016/S0959-437X(02)00351-9, 12433586
    • Malik HS, Henikoff S. Conflict begets complexity: the evolution of centromeres. Curr Opin Genet Dev 2002, 12:711-718. 10.1016/S0959-437X(02)00351-9, 12433586.
    • (2002) Curr Opin Genet Dev , vol.12 , pp. 711-718
    • Malik, H.S.1    Henikoff, S.2
  • 8
    • 77955290513 scopus 로고    scopus 로고
    • Centromere identity: a challenge to be faced
    • 10.1007/s00438-010-0553-4, 20585957
    • Mehta GD, Agarwal MP, Ghosh SK. Centromere identity: a challenge to be faced. Mol Genet Genomics 2010, 284:75-94. 10.1007/s00438-010-0553-4, 20585957.
    • (2010) Mol Genet Genomics , vol.284 , pp. 75-94
    • Mehta, G.D.1    Agarwal, M.P.2    Ghosh, S.K.3
  • 9
    • 44449100870 scopus 로고    scopus 로고
    • Epigenetic control of centromere behaviour
    • 10.1146/annurev.genet.41.110306.130127, 17711387
    • Ekwall K. Epigenetic control of centromere behaviour. Annu Rev Genet 2007, 41:63-81. 10.1146/annurev.genet.41.110306.130127, 17711387.
    • (2007) Annu Rev Genet , vol.41 , pp. 63-81
    • Ekwall, K.1
  • 10
    • 0027305680 scopus 로고
    • Centromeres of the fission yeast Schizosaccharomyces pombe are highly variable genetic loci
    • 360078, 8336703
    • Steiner NC, Hahnenberger KM, Clarke L. Centromeres of the fission yeast Schizosaccharomyces pombe are highly variable genetic loci. Mol Cell Biol 1993, 13:4578-4587. 360078, 8336703.
    • (1993) Mol Cell Biol , vol.13 , pp. 4578-4587
    • Steiner, N.C.1    Hahnenberger, K.M.2    Clarke, L.3
  • 11
    • 16644385308 scopus 로고    scopus 로고
    • Kinetochore and heterochromatin domains of the fission yeast centromere
    • Pidoux AL, Allshire RC. Kinetochore and heterochromatin domains of the fission yeast centromere. Chrom Res 2004, 12:521-534.
    • (2004) Chrom Res , vol.12 , pp. 521-534
    • Pidoux, A.L.1    Allshire, R.C.2
  • 12
    • 4444223267 scopus 로고    scopus 로고
    • "Holo"er than thou: Chromosome segregation and kinetochore function in C. elegens
    • Maddox PS, Oegema K, Desai A, Cheeseman IM. "Holo"er than thou: Chromosome segregation and kinetochore function in C. elegens. Chrom Res 2004, 12:641-653.
    • (2004) Chrom Res , vol.12 , pp. 641-653
    • Maddox, P.S.1    Oegema, K.2    Desai, A.3    Cheeseman, I.M.4
  • 13
    • 0242402131 scopus 로고    scopus 로고
    • Transcription in kinetoplastid protozoa: why be normal?
    • 10.1016/j.micinf.2003.09.005, 14623019
    • Campbell DA, Thomas S, Sturm NR. Transcription in kinetoplastid protozoa: why be normal?. Microbes Infect 2003, 5:1231-1240. 10.1016/j.micinf.2003.09.005, 14623019.
    • (2003) Microbes Infect , vol.5 , pp. 1231-1240
    • Campbell, D.A.1    Thomas, S.2    Sturm, N.R.3
  • 15
    • 0031719714 scopus 로고    scopus 로고
    • Segregation of minichromosomes in trypanosomes: implications for mitotic mechanisms
    • 10.1016/S0966-842X(98)01314-6, 9746942
    • Gull K, Alsford S, Ersfield K. Segregation of minichromosomes in trypanosomes: implications for mitotic mechanisms. Trends Microbiol 1998, 6:319-323. 10.1016/S0966-842X(98)01314-6, 9746942.
    • (1998) Trends Microbiol , vol.6 , pp. 319-323
    • Gull, K.1    Alsford, S.2    Ersfield, K.3
  • 16
    • 33745004786 scopus 로고    scopus 로고
    • The human CENP-A centromeric nucleosome-associated complex
    • 10.1038/ncb1397, 16622419
    • Foltz DR, Black BE, Bailey AO, Yates JR, Cleveland DW. The human CENP-A centromeric nucleosome-associated complex. Nature Cell Biol 2006, 8:458-469. 10.1038/ncb1397, 16622419.
    • (2006) Nature Cell Biol , vol.8 , pp. 458-469
    • Foltz, D.R.1    Black, B.E.2    Bailey, A.O.3    Yates, J.R.4    Cleveland, D.W.5
  • 17
    • 0242407193 scopus 로고    scopus 로고
    • Phylogenomics of the nucleosome
    • 10.1038/nsb996, 14583738
    • Malik HS, Henikoff S. Phylogenomics of the nucleosome. Nat Struct Biol 2003, 10:882-889. 10.1038/nsb996, 14583738.
    • (2003) Nat Struct Biol , vol.10 , pp. 882-889
    • Malik, H.S.1    Henikoff, S.2
  • 18
    • 34250179515 scopus 로고    scopus 로고
    • Repetitive DNA is associated with centromeric domains in Trypanosoma brucei but not Trypanosoma cruzi
    • 10.1186/gb-2007-8-3-r37, 1868937, 17352808
    • Obado SO, Bot C, Nilsson D, Andersson B, Kelly JM. Repetitive DNA is associated with centromeric domains in Trypanosoma brucei but not Trypanosoma cruzi. Genome Biol 2007, 8:R37. 10.1186/gb-2007-8-3-r37, 1868937, 17352808.
    • (2007) Genome Biol , vol.8
    • Obado, S.O.1    Bot, C.2    Nilsson, D.3    Andersson, B.4    Kelly, J.M.5
  • 19
    • 79951567142 scopus 로고    scopus 로고
    • Centromere-associated topoisomerase activity in bloodstream form Trypanosoma brucei
    • 10.1093/nar/gkq839, 3035458, 20864447
    • Obado SO, Bot C, Echeverry MC, Bayona JC, Alvarez VE, Taylor MC, Kelly JM. Centromere-associated topoisomerase activity in bloodstream form Trypanosoma brucei. Nucl Acids Res 2011, 39:1023-1033. 10.1093/nar/gkq839, 3035458, 20864447.
    • (2011) Nucl Acids Res , vol.39 , pp. 1023-1033
    • Obado, S.O.1    Bot, C.2    Echeverry, M.C.3    Bayona, J.C.4    Alvarez, V.E.5    Taylor, M.C.6    Kelly, J.M.7
  • 20
    • 33845981777 scopus 로고    scopus 로고
    • PICH, a centromere-associated SNF2 family ATPase, is regulated by Plk1 and required for spindle checkpoint
    • 10.1016/j.cell.2006.11.041, 17218258
    • Baumann C, Körner R, Hofmann K, Nigg EA. PICH, a centromere-associated SNF2 family ATPase, is regulated by Plk1 and required for spindle checkpoint. Cell 2007, 128:101-114. 10.1016/j.cell.2006.11.041, 17218258.
    • (2007) Cell , vol.128 , pp. 101-114
    • Baumann, C.1    Körner, R.2    Hofmann, K.3    Nigg, E.A.4
  • 21
    • 34547192058 scopus 로고    scopus 로고
    • BLM is required for faithful chromosome segregation and its localization defines a class of ultrafine anaphase bridges
    • 10.1038/sj.emboj.7601777, 1933408, 17599064
    • Chan K-L, North PS, Hickson ID. BLM is required for faithful chromosome segregation and its localization defines a class of ultrafine anaphase bridges. EMBO J 2007, 26:3397-3409. 10.1038/sj.emboj.7601777, 1933408, 17599064.
    • (2007) EMBO J , vol.26 , pp. 3397-3409
    • Chan, K.-L.1    North, P.S.2    Hickson, I.D.3
  • 22
    • 0036790633 scopus 로고    scopus 로고
    • Co-localization of centromere activity, proteins and topoisomerase-II within a subdomain of the major human × alpha-satellite array
    • 10.1093/emboj/cdf511, 129033, 12356743
    • Spence JM, Critcher R, Ebersole TA, Valdivia MM, Earnshaw WC, Fukagawa T, Farr CJ. Co-localization of centromere activity, proteins and topoisomerase-II within a subdomain of the major human × alpha-satellite array. EMBO J 2002, 21:5269-5280. 10.1093/emboj/cdf511, 129033, 12356743.
    • (2002) EMBO J , vol.21 , pp. 5269-5280
    • Spence, J.M.1    Critcher, R.2    Ebersole, T.A.3    Valdivia, M.M.4    Earnshaw, W.C.5    Fukagawa, T.6    Farr, C.J.7
  • 23
    • 56049098748 scopus 로고    scopus 로고
    • Hairpin structures formed by alpha satellite DNA of human centromeres are cleaved by human topoisomerase
    • 10.1093/nar/gkn640, 2577340, 18824478
    • Jonstrup AT, Thomsen T, Wang Y, Knudsen BR, Koch J, Andersen AH. Hairpin structures formed by alpha satellite DNA of human centromeres are cleaved by human topoisomerase. Nucl Acids Res 2008, 36:6165-6174. 10.1093/nar/gkn640, 2577340, 18824478.
    • (2008) Nucl Acids Res , vol.36 , pp. 6165-6174
    • Jonstrup, A.T.1    Thomsen, T.2    Wang, Y.3    Knudsen, B.R.4    Koch, J.5    Andersen, A.H.6
  • 24
    • 12744273368 scopus 로고    scopus 로고
    • Functional mapping of a trypanosome centromere by chromosome fragmentation identifies a 16 kb GC-rich transcriptional "strand-switch" domain as a major feature
    • 10.1101/gr.2895105, 540271, 15632088
    • Obado SO, Taylor MC, Wilkinson SR, Bromley EV, Kelly JM. Functional mapping of a trypanosome centromere by chromosome fragmentation identifies a 16 kb GC-rich transcriptional "strand-switch" domain as a major feature. Genome Res 2005, 15:36-43. 10.1101/gr.2895105, 540271, 15632088.
    • (2005) Genome Res , vol.15 , pp. 36-43
    • Obado, S.O.1    Taylor, M.C.2    Wilkinson, S.R.3    Bromley, E.V.4    Kelly, J.M.5
  • 25
    • 33646263371 scopus 로고    scopus 로고
    • Evidence on the chromosomal location of centromeric DNA in Plasmodium falciparum from etoposide-mediated topoisomerase-II cleavage
    • 10.1073/pnas.0510363103, 1458945, 16617116
    • Kelly JM, McRobert L, Baker DA. Evidence on the chromosomal location of centromeric DNA in Plasmodium falciparum from etoposide-mediated topoisomerase-II cleavage. Proc Natl Acad Sci USA 2006, 103:6706-6711. 10.1073/pnas.0510363103, 1458945, 16617116.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6706-6711
    • Kelly, J.M.1    McRobert, L.2    Baker, D.A.3
  • 26
    • 77749336335 scopus 로고    scopus 로고
    • Functional identification of the Plasmodium centromere and generation of a Plasmodium artificial chromosome
    • 10.1016/j.chom.2010.02.010, 2996609, 20227667
    • Iwanaga S, Khan SM, Kaneko I, Christodoulou Z, Newbold C, Yuda M, Janse CJ, Waters AP. Functional identification of the Plasmodium centromere and generation of a Plasmodium artificial chromosome. Cell Host Microbe 2010, 7:245-255. 10.1016/j.chom.2010.02.010, 2996609, 20227667.
    • (2010) Cell Host Microbe , vol.7 , pp. 245-255
    • Iwanaga, S.1    Khan, S.M.2    Kaneko, I.3    Christodoulou, Z.4    Newbold, C.5    Yuda, M.6    Janse, C.J.7    Waters, A.P.8
  • 27
    • 79952759696 scopus 로고    scopus 로고
    • Toxoplasma gondii sequesters centromeres to a specific nuclear region throughout the cell cycle
    • 10.1073/pnas.1006741108, 3048097, 21321216
    • Brooks CF, Francia ME, Gissot M, Croken MM, Kim K, Striepen B. Toxoplasma gondii sequesters centromeres to a specific nuclear region throughout the cell cycle. Proc Natl Acad Sci USA 2011, 108:3767-3772. 10.1073/pnas.1006741108, 3048097, 21321216.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 3767-3772
    • Brooks, C.F.1    Francia, M.E.2    Gissot, M.3    Croken, M.M.4    Kim, K.5    Striepen, B.6
  • 28
    • 0017467555 scopus 로고
    • A new semi-defined medium for Trypansoma brucei sspp
    • Brun R, Jenni L. A new semi-defined medium for Trypansoma brucei sspp. Acta Tropica 1977, (34):21-33.
    • (1977) Acta Tropica , Issue.34 , pp. 21-33
    • Brun, R.1    Jenni, L.2
  • 29
    • 0022729122 scopus 로고
    • The karyotype and ploidy of Trypanosoma cruzi
    • 1166940, 3525150
    • Gibson WC, Miles MA. The karyotype and ploidy of Trypanosoma cruzi. EMBO J 1986, 5:1299-1305. 1166940, 3525150.
    • (1986) EMBO J , vol.5 , pp. 1299-1305
    • Gibson, W.C.1    Miles, M.A.2
  • 30
    • 0001475795 scopus 로고
    • Isolation of DNA and RNA from Leishmania
    • Humana Press, New Jersey, Hyde JE, Methods in Molecular Biology (series editor Walker JM)
    • Kelly JM. Isolation of DNA and RNA from Leishmania. Protocols in Molecular Parasitology 1993, 21:312-321. Humana Press, New Jersey, Hyde JE, Methods in Molecular Biology (series editor Walker JM).
    • (1993) Protocols in Molecular Parasitology , vol.21 , pp. 312-321
    • Kelly, J.M.1
  • 31
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucl Acid Res 1999, 27:573-580.
    • (1999) Nucl Acid Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 33
    • 38349081152 scopus 로고    scopus 로고
    • Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin
    • 10.1016/j.gene.2007.11.013, 18182173
    • Plohl M, Luchetti A, Mestrović N, Mantovani B. Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin. Gene 2008, 409:72-82. 10.1016/j.gene.2007.11.013, 18182173.
    • (2008) Gene , vol.409 , pp. 72-82
    • Plohl, M.1    Luchetti, A.2    Mestrović, N.3    Mantovani, B.4
  • 35
    • 0034007354 scopus 로고    scopus 로고
    • Architecture of the Trypanosoma brucei nucleus during interphase and mitosis
    • 10.1007/s004120050402, 10794572
    • Ogbadoyi E, Ersfeld K, Robinson D, Sherwin T, Gull K. Architecture of the Trypanosoma brucei nucleus during interphase and mitosis. Chromosoma 2000, 108:501-513. 10.1007/s004120050402, 10794572.
    • (2000) Chromosoma , vol.108 , pp. 501-513
    • Ogbadoyi, E.1    Ersfeld, K.2    Robinson, D.3    Sherwin, T.4    Gull, K.5
  • 36
    • 0030978125 scopus 로고    scopus 로고
    • Partitioning of large and minichromosomes in Trypanosoma brucei
    • 10.1126/science.276.5312.611, 9110983
    • Ersfeld K, Gull K. Partitioning of large and minichromosomes in Trypanosoma brucei. Science 1997, 276:611-614. 10.1126/science.276.5312.611, 9110983.
    • (1997) Science , vol.276 , pp. 611-614
    • Ersfeld, K.1    Gull, K.2
  • 37
    • 3242878498 scopus 로고    scopus 로고
    • Trypanosomatid histones
    • 10.1111/j.1365-2958.2004.04151.x, 15228519
    • Alsford S, Horn D. Trypanosomatid histones. Mol Microbiol 2004, 53:365-372. 10.1111/j.1365-2958.2004.04151.x, 15228519.
    • (2004) Mol Microbiol , vol.53 , pp. 365-372
    • Alsford, S.1    Horn, D.2
  • 38
    • 12344257200 scopus 로고    scopus 로고
    • A variant histone H3 is enriched at telomeres in Trypanosoma brucei
    • 10.1242/jcs.01515, 15522895
    • Lowell JE, Cross GA. A variant histone H3 is enriched at telomeres in Trypanosoma brucei. J Cell Sci 2004, 117:5937-5947. 10.1242/jcs.01515, 15522895.
    • (2004) J Cell Sci , vol.117 , pp. 5937-5947
    • Lowell, J.E.1    Cross, G.A.2
  • 39
    • 80052849224 scopus 로고    scopus 로고
    • In vitro centromere and kinetochore assembly on defined chromatin templates
    • 10.1038/nature10379, 21874020
    • Guse A, Carroll CW, Moree B, Fuller CJ, Straight AF. In vitro centromere and kinetochore assembly on defined chromatin templates. Nature 2011, 477:354-358. 10.1038/nature10379, 21874020.
    • (2011) Nature , vol.477 , pp. 354-358
    • Guse, A.1    Carroll, C.W.2    Moree, B.3    Fuller, C.J.4    Straight, A.F.5
  • 40
    • 78649630221 scopus 로고    scopus 로고
    • Epigenomics of centromere assembly and function
    • 10.1016/j.ceb.2010.07.002, 20675111
    • Stimpson KM, Sullivan BA. Epigenomics of centromere assembly and function. Curr Opin Cell Biol 2010, 22:772-780. 10.1016/j.ceb.2010.07.002, 20675111.
    • (2010) Curr Opin Cell Biol , vol.22 , pp. 772-780
    • Stimpson, K.M.1    Sullivan, B.A.2
  • 41
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • 10.1126/science.1074973, 12193640
    • Volpe TA, Kidner C, Hall IM, Teng G, Grewal SI, Martienssen RA. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 2002, 297:1833-1837. 10.1126/science.1074973, 12193640.
    • (2002) Science , vol.297 , pp. 1833-1837
    • Volpe, T.A.1    Kidner, C.2    Hall, I.M.3    Teng, G.4    Grewal, S.I.5    Martienssen, R.A.6
  • 42
    • 77952236323 scopus 로고    scopus 로고
    • RNAi-dependent formation of heterochromatin and its diverse functions
    • 10.1016/j.gde.2010.02.003, 3005588, 20207534
    • Grewal SI. RNAi-dependent formation of heterochromatin and its diverse functions. Curr Opin Genet Dev 2010, 20:134-141. 10.1016/j.gde.2010.02.003, 3005588, 20207534.
    • (2010) Curr Opin Genet Dev , vol.20 , pp. 134-141
    • Grewal, S.I.1
  • 43
    • 70449560425 scopus 로고    scopus 로고
    • Distinct and overlapping roles for two Dicer-like proteins in the RNA interference pathways of the ancient eukaryote Trypanosoma brucei
    • 10.1073/pnas.0907766106, 2764927, 19815526
    • Patrick KL, Shi H, Kolev NG, Ersfeld K, Tschudi C, Ullu E. Distinct and overlapping roles for two Dicer-like proteins in the RNA interference pathways of the ancient eukaryote Trypanosoma brucei. Proc Natl Acad Sci USA 2009, 106:17933-17938. 10.1073/pnas.0907766106, 2764927, 19815526.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 17933-17938
    • Patrick, K.L.1    Shi, H.2    Kolev, N.G.3    Ersfeld, K.4    Tschudi, C.5    Ullu, E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.