Lack of genetic diversity in Crimean-Congo hemorrhagic fever viruses in Turkey: Assessment of present and future patterns of disease

Journal of Medical Virology

Volumn 84, Issue 3, 2012, Pages 471-478

  Kalaycioglu, Atila T ^a,b   Durmaz, Riza ^b   Uyar, Yavuz ^b   Unaldi, Ozlem ^b   Aksekili, Ertugrul ^b   Ozkul, Aykut ^c   Korukluoglu, Gulay ^b   Ertek, Mustafa ^b  

^a KAFKAS UNIVERSITY   (Turkey)

^b Refik Saydam National Public Health Agency   (Turkey)

^c ANKARA UNIVERSITY   (Turkey)

Author keywords

Crimean Congo hemorrhagic fever; Genetic diversity; Glycoprotein precursor; M segment; Reassortment; Recombination; S segment; Turkey

Indexed keywords

VIRUS RNA;

ARTICLE; BLOOD SAMPLING; CRIMEAN CONGO HEMORRHAGIC FEVER; CRIMEAN CONGO HEMORRHAGIC FEVER VIRUS; GENE SEQUENCE; GENETIC VARIABILITY; HUMAN; HUMAN TISSUE; NAIRO VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; TURKEY (REPUBLIC); UNINDEXED SEQUENCE; VIRUS ISOLATION;

AMINO ACID SEQUENCE; GENES, VIRAL; GENETIC VARIATION; HEMORRHAGIC FEVER VIRUS, CRIMEAN-CONGO; HEMORRHAGIC FEVER, CRIMEAN; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; SEQUENCE ALIGNMENT; TURKEY;

CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS; IXODIDA;

EID: 84855891773     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.22224     Document Type: Article

References (34)

1. Ahmed AA, McFalls JM, Hoffmann C, Filone CM, Stewart SM, Paragas J, Khodjaev S, Shermukhamedova D, Schmaljohn CS, Doms RW, Bertolotti-Ciarlet A. 2005. Presence of broadly reactive and group-specific neutralizing epitopes on newly described isolates of Crimean-Congo hemorrhagic fever virus. J Gen Virol 86:3327-3336.
2. Bergeron E, Vincent MJ, Nichol ST. 2007. Crimean-Congo hemorrhagic fever virus glycoprotein processing by the endoprotease SKI-1/S1P is critical for virus infectivity. J Virol 81:13271-13276.
3. Burt FJ, Leman PA, Smith JF, Swanepoel R. 1998. The use of a reverse transcription-polymerase chain reaction for the detection of viral nucleic acid in the diagnosis of Crimean-Congo haemorrhagic fever. J Virol Methods 70:129-137.
4. Burt FJ, Paweska JT, Ashkettle B, Swanepoel R. 2009. Genetic relationship in southern African Crimean-Congo haemorrhagic fever virus isolates: Evidence for occurrence of reassortment. Epidemiol Infect 137:1302-1308.
5. Deyde VM, Khristova ML, Rollin PE, Ksiazek TG, Nichol ST. 2006. Crimean-Congo hemorrhagic fever virus genomics and global diversity. J Virol 80:8834-8842.
6. Ergonul O. 2006. Crimean-Congo haemorrhagic fever. Lancet Infect Dis 6:203-214.
7. Estrada-Peña A, Vatansever Z, Gargili A, Buzgan T. 2007. An early warning system for Crimean-Congo haemorrhagic fever seasonality in Turkey based on remote sensing technology. Geospat Health 2:127-135.
8. Flick R, Whitehouse CA. 2005. Crimean-Congo hemorrhagic fever virus. Curr Mol Med 5:753-760.
9. Karti SS, Odabasi Z, Korten V, Yilmaz M, Sonmez M, Caylan R, Akdogan E, Eren N, Koksal I, Ovali E, Erickson BR, Vincent MJ, Nichol ST, Comer JA, Rollin PE, Ksiazek TG. 2004. Crimean-Congo hemorrhagic fever in Turkey. Emerg Infect Dis 10:1379-1384.
10. Kraus AA, Mirazimi A. 2010. Molecular biology and pathogenesis of Crimean Congo hemorrhagic fever virus. Future Virol 54:469-479.
11. Kuhn JH, Seregin SV, Morzunov SP, Petrova ID, Vyshemirskii OI, Lvov DK, Tyunnikov GI, Gutorov VV, Netesov SV, Petrov VS. 2004. Genetic analysis of the M RNA segment of Crimean-Congo hemorrhagic fever virus strains involved in the recent outbreaks in Russia. Arch Virol 149:2199-2213.
12. Maltezou HC, Papa A. 2010. Crimean-Congo hemorrhagic fever: Risk for emergence of new endemic foci in Europe? Travel Med Infect Dis 8:139-143.
13. Midilli K, Gargili A, Ergonul O, Elevli M, Ergin S, Turan N, Sengöz G, Ozturk R, Bakar M. 2009. The first clinical case due to AP92 like strain of Crimean-Congo Hemorrhagic Fever virus and a field survey. BMC Infect Dis 9:90-97.
14. Mild M, Simon M, Albert J, Mirazimi A. 2010. Towards an understanding of the migration of Crimean-Congo hemorrhagic fever virus. J Gen Virol 91:199-207.
15. Morikawa S, Saijo M, Kurane I. 2007. Recent progress in molecular biology of Crimean-Congo hemorrhagic fever. Comp Immunol Microbiol Infect Dis 30:375-389.
16. Ozdarendeli A, Aydin K, Tonbak S, Aktas M, Altay K, Koksal I, Bolat Y, Dumanli N, Kalkan A. 2008. Genetic analysis of the M RNA segment of Crimean-Congo hemorrhagic fever virus strains in Turkey. Arch Virol 153:37-44.
17. Ozdarendeli A, Canakoǧlu N, Berber E, Aydin K, Tonbak S, Ertek M, Buzgan T, Bolat Y, Aktaş M, Kalkan A. 2010. The complete genome analysis of Crimean-Congo hemorrhagic fever virus isolated in Turkey. Virus Res 147:288-293.
18. Ozkaya E, Dincer E, Carhan A, Uyar Y, Ertek M, Whitehouse CA, Ozkul A. 2010. Molecular epidemiology of Crimean-Congo hemorrhagic fever virus in Turkey: Occurrence of local topotype. Virus Res 149:64-70.
19. Papa A, Bozovi B, Pavlidou V, Papadimitriou E, Pelemis M, Antoniadis A. 2002a. Genetic detection and isolation of Crimean-Congo hemorrhagic fever virus, Kosovo, Yugoslavia. Emerg Infect Dis 8:852-854.
20. Papa A, Bino S, Llagami A, Brahimaj B, Papadimitriou E, Pavlidou V, Velo E, Cahani G, Hajdini M, Pilaca A, Harxhi A, Antoniadis A. 2002b. Crimean-Congo hemorrhagic fever in Albania, 2001. Eur J Clin Microbiol Infect Dis 21:603-606.
21. Papa A, Papadimitriou E, Bozovic B, Antoniadis A. 2005. Genetic characterization of the M RNA segment of a Balkan Crimean-Congo haemorrhagic fever virus strain. J Med Virol 75:446-469.
22. Papa A, Papadimitriou E, Christova I. 2011. The Bulgarian vaccine Crimean-Congo haemorrhagic fever virus strain. Scand J Infect Dis 43:225-229.
23. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
24. Sanchez AJ, Vincent MJ, Nichol ST. 2002. Characterization of the glycoproteins of Crimean-Congo hemorrhagic fever virus. J Virol 76:7263-7275.
25. Scmaljohn C, Hooper JW. 2001. Bunyaviridae: The viruses and their replication. In: Knipe DM, Howley PM, editors. Fields virology. 4th edition. London, New York and Tokyo: Lippincott Williams & Wilkins, pp 1447-1472.
26. Tamura K, Nei M, Kumar S. 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101:11030-11035.
27. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599.
28. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucl Acids Res 22:4673-4680.
29. Tonbak S, Aktas M, Altay K, Azkur AK, Kalkan A, Bolat Y, Dumanli N, Ozdarendeli A. 2006. Crimean-Congo hemorrhagic fever virus: Genetic analysis and tick survey in Turkey. J Clin Microbiol 44:4120-4124.
30. Whitehouse CA. 2004. Crimean-Congo hemorrhagic fever. Antiviral Res 64:145-160.
31. Yapar M, Aydogan H, Pasha A, Besirbellioglu BA, Bodur H, Basustaoglu AC, Guney C, Kubar A. 2005. Rapid and quantitative detection of Crimean-Congo hemorrhagic fever virus by one-step-real time reverse-transcriptase PCR. Jpn J Infect Dis 58:358-362.
32. Yashina L, Petrova I, Seregin S, Vyshemirskii O, Lvov D, Aristova V, Kuhn J, Morzunov S, Gutorov V, Kuzina I, Tyunnikov G, Netesov S, Petrov V. 2003. Genetic variability of Crimean-Congo haemorrhagic fever virus in Russia and Central Asia. J Gen Virol 84:1199-1206.
33. Yilmaz GR, Buzgan T, Torunoglu MA, Safran A, Irmak H, Com S, Uyar Y, Carhan A, Ozkaya E, Ertek M. 2008. A preliminary report on Crimean-Congo haemorrhagic fever in Turkey, March-June 2008. Euro Surveill 13:470-471.
34. Yilmaz GR, Buzgan T, Irmak H, Safran A, Uzun R, Cevik MA, Torunoglu MA. 2009. The epidemiology of Crimean-Congo hemorrhagic fever in Turkey, 2002-2007. Int J Infect Dis 13:380-386.