Molecular epidemiology of Crimean-Congo hemorrhagic fever virus in Turkey: Occurrence of local topotype

Virus Research

Volumn 149, Issue 1, 2010, Pages 64-70

  Ozkaya, Etem ^a   Dincer, Ender ^b   Carhan, Ahmet ^a   Uyar, Yavuz ^a   Ertek, Mustafa ^a   Whitehouse, Chris A ^c   Ozkul, Aykut ^b  

^a MINISTRY OF HEALTH   (Turkey)

^b ANKARA UNIVERSITY   (Turkey)

^c UNITED STATES ARMY MEDICAL RESEARCH INSTITUTE OF INFECTIOUS DISEASES   (United States)

Author keywords

Arboviruses; Bunyaviruses; CCHFV; M segment; Phylogenetic analysis; S segment; Turkey

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; GENETIC DIFFERENCE; GENETIC RECOMBINATION; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HUMAN; HUMAN VERSUS ANIMAL COMPARISON; MOLECULAR EPIDEMIOLOGY; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NAIRO VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TICK; TURKEY (REPUBLIC); VIRUS HEMORRHAGIC FEVER; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS REPLICATION; VIRUS STRAIN;

ANIMALS; CLUSTER ANALYSIS; GENOTYPE; HEMORRHAGIC FEVER VIRUS, CRIMEAN-CONGO; HEMORRHAGIC FEVER, CRIMEAN; HUMANS; IXODIDAE; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; RHIPICEPHALUS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TURKEY; VIRAL PROTEINS;

ARBOVIRUS; CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS; HYALOMMA; IXODIDA; ORTHOBUNYAVIRUS;

EID: 77549085870     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2009.12.014     Document Type: Article

References (31)

1. Antoniadis A., and Casals J. Serological evidence of human infection with Congo-Crimean hemorrhagic fever virus in Greece. Am. J. Trop. Med. Hyg. 31 (1982) 1066-1067
2. Aydin L., and Bakirci S. Geographical distribution of ticks in Turkey. Parasitol. Res. 101 Suppl. 2 (2007) 163-166
3. Burt F.J., Leman P.A., Smith J.F., and Swanepoel R. The use of a reverse transcription-polymerase chain reaction for the detection of viral nucleic acid in the diagnosis of Crimean-Congo haemorrhagic fever. J. Virol. Method 70 (1998) 129-137
4. Chare E.R., Gould E.A., and Holmes E.C. Phylogenetic analysis reveals a low rate of homologous recombination in negative sense RNA viruses. J. Gen. Virol. 84 (2003) 2691-2703
5. Deyde V.M., Khristova M.L., Rollin P.E., Ksiazek T.G., and Nichol S.T. Crimean-Congo haemorrhagic fever virus genomics and global diversity. J. Virol. 80 (2006) 8834-8842
6. Drosten C., Minnak D., Emmerich P., Schmitz H., and Reinicke T. Crimean-Congo hemorrhagic fever in Kosovo. J. Clin. Microbiol. 40 (2002) 1122-1123
7. Ergonul O. Crimean-Congo haemorrhagic fever. Lancet Infect. Dis. 6 (2006) 203-214
8. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
9. Haferkamp S., Fernando L., Schwarz T.F., Feldmann H., and Flick R. Intracellular localization of Crimean-Congo hemorrhagic fever (CCHF) virus glycoproteins. Virol. J. 2 (2005) 42
10. Karti S.S., Odabasi Z., Korten V., Yilmaz M., Sonmez M., Caylan R., Akdogan E., Eren N., Koksal I., Ovali E., Erickson B.R., Vincent M.J., Nichol S.T., Comer J.A., Rollin P.E., and Ksiazek T.G. Crimean-Congo hemorrhagic fever in Turkey. Emerg. Infect. Dis. 10 (2004) 1379-1384
11. Kuhn J.H., Seregin S.V., Morzunov S.P., Petrova I.D., Vyshemirskii O.I., Lvoy D.K., Tyunnikov G.I., Gutorov V.V., Netesov S.V., and Petrov V.S. Genetic analysis of the M RNA segment of Crimean-Congo hemorrhagic fever virus involved in the recent outbreaks in Russia. Arch. Virol. 149 (2004) 2199-2213
12. Labuda M., Kozuch O., Zuffova E., Eleckova E., Hails R.S., and Nuttall P.A. Tick-borne encephalitis virus transmission between ticks cofeeding on specific immune natural rodent hosts. Virology 235 (1997) 138-143
13. Midilli K., Gargi{dotless}li{dotless} A., Ergonul E., Elevli M., Ergin S., Turan N., Şengöz G., Ozturk R., and Bakar M. The first clinical case due to AP92 like strain of Crimean-Congo hemorrhagic fever virus and a field survey. BMC Infect. Dis. 9 (2009) 90-96
14. Morikawa S., Saijo M., and Kurane I. Recent progress in molecular biology of Crimean Congo hemorrhagic fever. Comp. Immunol. Microbiol. Infect. Dis. 30 (2007) 375-389
15. Ozdarendeli A., Aydin K., Tonbak S., Aktas M., Altay K., Koksal I., Bolay Y., Dumanli N., and Kalkan A. Genetic analysis of the M RNA segment of Crimean-Congo haemorrhagic fever virus strains in Turkey. Arch. Virol. 153 (2008) 37-44
16. Papa A., Bino S., Llagami A., Brahimaj B., Papadimitriou E., Pavlidou V., Velo E., Cahani G., Hajdini M., Pilaca A., Harxhi A., and Antoniadis A. Crimean-Congo haemorrhagic fever in Albania, 2001. Eur. J. Clin. Microbiol. Infect. Dis. 21 (2002) 603-606
17. Papa A., Christova I., Papadimitriou E., and Antoniadis A. Crimean-Congo haemorrhagic fever in Bulgaria. Emerg. Infect. Dis. 10 (2004) 1465-1467
18. Papa A., Bozovi B., Pavlidou V., Papadimitriou E., Pelemis M., and Antoniadis A. Genetic detection and isolation of Crimean-Congo haemorrhagic fever virus, Kosovo, Yugoslavia. Emerg. Infect. Dis. 8 (2002) 852-854
19. Rodriquez L.L., Maupin G.O., Ksiazek T.G., Rollin P.E., Khan A.S., Schwarz T.F., Lofts R.S., Smith J.F., Noor A.M., Peters C.J., and Nichol S.T. Molecular investigation of a multisource outbreak of Crimean-Congo hemorrhagic fever in the United Arab Emirates. Am. J. Trop. Med. Hyg. 57 (1997) 512-518
20. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
21. Schmaljohn C., and Hooper J.W. Bunyaviridae: The Viruses and Their Replication. 4th ed. (2001), Lippincott Williams & Wilkins, Philadelphia, PA
22. Tamura K., Nei M., and Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Nat. Acad. Sci. U.S.A. 101 (2004) 11030-11035
23. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
24. Tonbak S., Aktaş M., Altay K., Azkur A.K., Kalkan A., Bolat Y., Dumanli N., and Ozdarendeli A. Crimean-Congo hemorrhagic fever virus: genetic analysis and tick survey in Turkey. J. Clin. Virol. 44 (2006) 4120-4124
25. Yashina L., Petrova I., Seregin S., Vyshemirskii O., Lvov D., Aristova V., Kuhn J., Morzunov S., Gutorov V., Kuzina I., Tyunnikov G., Netesov S., and Petrov V. Genetic variability of Crimean-Congo haemorrhagic fever virus in Russia and Central Asia. J. Gen. Virol. 84 (2003) 1199-1206
26. Yashina L., Vyshemirskii O., Seregin S., Petrova I., Samokhvalov E., Lvov D., Gutorov V., Kuzina I., Tyunnikov G., Tang Y.W., Netesov S., and Petrov V. Genetic analysis of Crimean-Congo hemorrhagic fever virus in Russia. J. Clin. Microbiol. 41 (2003) 860-862
27. Yilmaz G.R., Buzgan T., Irmak H., Safran A., Uzun R., Cevik M.A., and Torunoglu M.A. The epidemiology of Crimean-Congo hemorrhagic fever in Turkey, 2002-2007. Int. J. Infect. Dis. 13 (2009) 380-386
28. Yilmaz G.R., Buzgan T., Torunoglu M.A., Safran A., Irmak H., Com S., Uyar Y., Carhan A., Ozkaya E., and Ertek M. A preliminary report on Crimean-Congo haemorrhagic fever in Turkey, March-June 2008. Euro Surveill. 14 (2008) 18953
29. Yapar M., Aydogan H., Pahsa A., Besirbellioglu B.A., Bodur H., Basustaoglu A.C., Guney C., and Kubar A. Rapid and quantitative detection of Crimean-Congo hemorrhagic fever virus by one-step real-time reverse-transcriptase PCR. Jpn. J. Infect. Dis. 58 (2005) 358-362
30. Whitehouse C.A. Crimean-Congo hemorrhagic fever. Antiviral Res. 64 (2004) 145-160
31. Whitehouse C.A. Crimean-Congo hemorrhagic fever virus and other nairoviruses. In: Mahy B.W.J., and Van Regenmortel M.H.V. (Eds). Encyclopedia of Virology (2008), Elsevier, Oxford 596-603