Native polyubiquitin promoter of rice provides increased constitutive expression in stable transgenic rice plants

Plant Cell Reports

Volumn 31, Issue 2, 2012, Pages 271-279

  Bhattacharyya, Jagannath ^a   Chowdhury, Asif Hasan ^a   Ray, Samarjit ^a   Jha, Jyoti Krishna ^a   Das, Srirupa ^a   Gayen, Srimonta ^a   Chakraborty, Anirban ^a   Mitra, Joy ^a   Maiti, Mrinal K ^a   Basu, Asitava ^a   Sen, Soumitra K ^a  

^a INDIAN INSTITUTE OF TECHNOLOGY   (India)

Author keywords

Glucuronidase; Intron; OsGAI promoter; OsUbi promoter; Promoter characterization; Rice constitutive expression

Indexed keywords

BETA GLUCURONIDASE; PLANT DNA; POLYUBIQUITIN;

ANALYSIS OF VARIANCE; ARTICLE; CROSS BREEDING; FLUOROMETRY; GENE EXPRESSION REGULATION; GENETICS; MAIZE; METABOLISM; MOLECULAR CLONING; PROMOTER REGION; RICE; SOUTHERN BLOTTING; TRANSGENIC PLANT; WESTERN BLOTTING;

ANALYSIS OF VARIANCE; BLOTTING, SOUTHERN; BLOTTING, WESTERN; CLONING, MOLECULAR; CROSSES, GENETIC; DNA, PLANT; FLUOROMETRY; GENE EXPRESSION REGULATION, PLANT; GLUCURONIDASE; ORYZA SATIVA; PLANTS, GENETICALLY MODIFIED; POLYUBIQUITIN; PROMOTER REGIONS, GENETIC; ZEA MAYS;

ZEA MAYS;

EID: 84855860561     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-011-1161-4     Document Type: Article

References (51)

1. An YQ, McDowell JM, Huang S, McKinney EC, Chambliss S, Meagher RB (1996) Strong, constructive expression of the Arabidopsis ACT2/ACT8 actin subclass in vegetative tissues. Plant J 10: 107-121.
2. Baszcynski CL, Barbour E, Miki B (1997) ALS3 promoters. US Patent 5659026.
3. Bhattacharyya J (2010) Transfer of alien entomocidal gene(s) in a commercial rice cultivar of India. Ph. D. Dissertation, Calcutta University, India.
4. Binet MN, Lepetit M, Weil JH, Tessier LH (1991a) Analysis of a sunflower polyubiquitin promoter by transient expression. Plant Sci 79: 87-94.
5. Binet MN, Weil JH, Tesseir LH (1991b) Structure and expression of sunflower ubiquitin genes. Plant Mol Biol 17: 395-407.
6. Bradford MM (1976) A rapid and sensitive method for the qualification of microgram quantities of protein utilizing the principle-dye binding. Anal Biochem 72: 248-254.
7. Burke TJ, Callis J, Vierstra RD (1988) Characterization of a polyubiquitin gene from Arabidopsisthaliana. Mol Gen Genet 213: 435-443.
8. Callis J, Raasch JA, Vierstra RD (1990) Ubiquitin extension proteins of Arabidopsisthaliana-structure, localization, and expression of their promoters in transgenic tobacco. J Biol Chem 265: 12486-12493.
9. Cazzonelli CI, McCallum EJ, Lee R, Botella JR (2005) Characterization of a strong constitutive mung bean (Vigna radiata L.). Promoters with a complex mode of regulation in planta. Transgenic Res 14: 941-967.
10. Chiera JM, Bouchard RA, Dorsey SL, Park EH, Buenrostro-Nava MT, Ling PP, Finer JJ (2007) Isolation of two highly active soybean (Glycine max (L.) Merr.) promoters and their characterization using a new automated image collection and analysis system. Plant Cell Rep 26: 1501-1509.
11. Chowdhury AH (2005) Development of transgenic rice plants with altered growth pattern. Ph. D. dissertation, Jadavpur University, Calcutta, India.
12. Christensen AH, Quail PH (1996) Ubiquitin promoter-based vectors for high levels of selectable and/or screenable marker genes in monocotyledonous plants. Transgenic Res 5: 213-218.
13. Christensen AH, Sharrok RA, Quail PH (1992) Maize polyubiquitin genes: structure, thermal perturbation of expression and transcript splicing, and promoter activity following transfer to protoplasts by electroporation. Plant Mol Biol 18: 675-689.
14. Cornejo MJ, Luth D, Blankenship KM, Anderson OD, Blechl A (1993) Activity of a maize ubiquitin promoter in transgenic rice. Plant Mol Biol 23: 567-581.
15. DeBuck S, Depicker A (2001) Disruption of their palindromic arrangement leads to selective loss of DNA methylation in inversely repeated gus transgenes in Arabidopsis. Mol Genet Genom 265: 1060-1068.
16. DeBuck S, Depicker A (2004) Gene expression and level of expression. In: Christou P, Klee H (eds) Handbook of plant biotechnology. John Wiley, Chichester, pp 331-345.
17. DeBuck S, VanMontagu M, Depicker A (2001) Transgene silencing of invertedly repeated transgenes is released upon deletion of one of the transgenes involved. Plant Mol Biol 46: 433-445.
18. Doyle JJ, Doyle JJ (1990) Isolation of plant DNA form fresh tissue. Focus 12: 13-15.
19. Furtado A, Henry RJ, Takaiwa F (2008) Comparison of promoters in transgenic rice. Plant Biotech J 6: 679-693.
20. Garbarino JE, Oosumi T, Belknap WR (1995) Isolation of a polyubiquitin promoter and its expression in transgenic potato plants. Plant Physiol 109: 1371-1378.
21. Genschik P, Marbach J, Uze M, Feuerman M, Plesse B, Fleck J (1994) Structure and promoter activity of a stress and developmentally regulated polyubiquitin-encoding gene of Nicotiana tabacum. Gene 148: 195-202.
22. He C, Lin Z, McElroy D, Wu R (2009) Identification of a rice actin2 gene regulatory region for high-level expression of transgenes in monocots. Plant Biotechnol J 7: 227-239.
23. Hermann SR, Harding RM, Dale JL (2001) The banana actin1 promoter drives near-constitutive transgene expression in vegetative tissues of banana (Musa spp.). Plant Cell Rep 20: 525-530.
24. Hernandez-Garcia CM, Martinelli AP, Bouchard RA, Finer JJ (2009) A soybean (Glycine max) polyubiquitin promoter gives strong constitutive expression in transgenic soybean. Plant Cell Rep 28: 837-849.
25. Hiei Y, Komari T (2008) Agrobacterium mediated transformats of rice using immature embryos or calli induced from mature seed. Nat Protoc 3(5): 824-834.
26. Hiei Y, Ohta S, Komari T, Kumashiro T (1994) Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J 6: 271-282.
27. Higo K, Ugawa Y, Iwamoto M, Korenaga T (1999) Plant cis-acting regulatory DNA elements (PLACE) database. Nucleic Acid Res 27(1): 297-300.
28. Hood EE, Gelvin SB, Melchers LS, Hoekema A (1993) New Agrobacterium helper plasmids for gene-transfer to plants. Transgenic Res 2: 208-218.
29. Itoh H, Veguchi-Tanaka M, Sato Y, Ashikari M, Matsuoka M (2002) The gibberellins signaling path way is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei. Plant Cell 14: 57-70.
30. Jefferson RA (1987) Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol Biol Rep 5: 387-405.
31. Joung YH, Kamo K (2006) Expression of a polyubiquitin promoter isolated from Gladiolus. Plant Cell Rep 25: 1081-1088.
32. Kamo K, Blowers A, Smith F, van Eck J, Lawson R (1995) Stable transformation of Gladiolus using suspension cells and callus. J Am Soc Hortic Sci 120: 347-352.
33. Kawalleck PP, Somssich IE, Feldbrugge M, Hahlbrock K, Weisshaar B (1993) Polyubiquitin gene expression and structural properties of the ubi4-2 gene in Petroselium crispum. Plant Mol Biol 21: 673-684.
34. Lescot M et al (2002) PlantCARE, a database of plant cis-acting regulatory elements a portal to tools for in silico analysis of promoter sequences. Nucleic Acid Res 30(1): 325-327.
35. Mandel T, Fleming AJ, Krahenbuhl R, Kuhlemeier C (1995) Definition of constitutive gene expression in plants: the translation initiation factor 4A gene as a model. Plant Mol Biol 29: 995-1004.
36. McElroy D, Zhang W, Wu R (1990) Isolation of an efficient actin promoter for use in rice transformation. Plant Cell 2: 163-171.
37. McElroy D, Blowers A, Jenes B, Wu R (1991) Construction of expression vectors based on the rice actin1 (Act1) 5′ region for use in monocot transformation. Mol Gen Genet 231: 150-160.
38. O'Connor TR, Dyreson C, Wyrick JJ (2005) Athena: a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences. Bioinformatics 21(24): 441-4413.
39. Potenza C, Aleman L, Sengupta-Gopalan C (2004) Targeting transgene expression in research, agricultural, and environmental applications: promoters used in plant transformation. In Vitro Cell Dev Biol Plant 40: 1-22.
40. Prestridge DS (1995) Predicting polII promoter sequences using transcription factor binding sites. J Mol Biol 249(5): 923-932.
41. Rooke L, Byrne D, Salgueiro S (2000) Marker gene expression driven by the maize ubiquitin promoters in transgenic wheat. Ann App Biol 136: 167-172.
42. Rose AB, Beliakoff JA (2000) Intron-mediated enhancement of gene expression independent of unique intron sequences and splicing. Plant Physiol 22: 535-542.
43. Rushton PJ, Reinstädler A, Lipka V, Lippok B, Somssich IE (2002) Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling. Plant Cell 14: 749-762.
44. Sambrook J, Fritsch EF, Maniatist T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold spring Harbor Laboratory press, Plainview.
45. Shahmuradov IA, Solovyev VV, Gammerman AJ (2005) Plant promoter prediction with confidence estimation. Nucleic Acid Res 33(3): 1069-1076.
46. Shivamani E, Qu R (2006) Expression enhancement of a rice polyubiquitin gene promoter. Plant Mol Biol 60: 225-239.
47. Sullivan JA, Shirasu K, Deng XW (2003) The diverse roles of ubiquitin and the 26S proteasome in the life of plants. Nat Rev Genet 4: 948-958.
48. Tiana L, Wub K, Hannama C, Latoszek-Greena M, Sibbalda S, Huc M, Browna DCW, Mikic B (2005) Analysis and use of the tobacco elF4A-10 promoter elements for transgene expression. J Plant Physiol 162: 1335-1366.
49. Twyman RM (2003) Growth and development: control of gene expression, regulation of transcription. In: Thomas B, Murphy DJ, Murray B (eds) Encyclopedia of applied plant sciences. Elesvier, London, pp 558-567.
50. Wang JL, Jiang JD, Oard JH (2000) Structure expression and promoter activity of two polyubiquitin genes from rice (Oryza sativa L.). Plant Sci 156: 201-211.
51. Wei HR, Wang ML, More PH, Albert HH (2003) Comparative expression analysis of two sugarcane polyubiquitin promoters and flanking sequences in transgenic plants. J Plant Physiol 160: 1241-1251.