Genetic and phylogenetic evidence for misidentification of Vibrio species within the Harveyi clade

Letters in Applied Microbiology

Volumn 54, Issue 2, 2012, Pages 160-165

  Hoffmann, M ^a,b   Monday, S R ^a   Fischer, M ^b   Brown, E W ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b UNIVERSITY OF HAMBURG   (Germany)

Author keywords

Harveyi clade; Identification; MLSA; Molecular genetic; Vibrios

Indexed keywords

ANIMALS; PHYLOGENETIC;

HARVEYI CLADE; HOUSEKEEPING GENE; IDENTIFICATION; MOLECULAR GENETICS; MULTI-LOCUS SEQUENCE ANALYSE; PHYLOGENETICS; SEQUENCE ANALYSIS; SIX GENES; VIBRIO; VIBRIO SPECIES;

GENES;

BACTERIAL STRAIN; GENETIC ANALYSIS; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NOTE; NUCLEOTIDE SEQUENCE; PHYLOGENY; UNINDEXED SEQUENCE; VIBRIO; VIBRIO ALGINOLYTICUS; VIBRIO COMMUNIS; VIBRIO HARVEYI; VIBRIO OWENSII; VIBRIONACEAE;

ANIMALIA; VIBRIO; VIBRIO ALGINOLYTICUS;

EID: 84855801435     PISSN: 02668254     EISSN: 1472765X     Source Type: Journal    
DOI: 10.1111/j.1472-765X.2011.03183.x     Document Type: Note

References (13)

1. Bell, R.L., Gonzalez-Escalona, N., Stones, R. and Brown, E.W. (2010) Phylogenetic evaluation of the 'Typhimurium' complex of Salmonella strains using a seven-gene multi-locus sequence analysis. Infect Genet Evol 11, 83-91.
2. Cano-Gomez, A., Goulden, E.F., Owens, L. and Hoj, L. (2010) Vibrio owensii sp. nov., isolated from cultured crustaceans in Australia. FEMS Microbiol Lett 302, 175-181.
3. Chimetto, L.A., Cleenwerck, I., Alves, N. Jr, Silva, B.S., Brocchi, M., Willems, A., De Vos, P. and Thompson, F.L. (2010) Vibrio communis sp. nov. isolated from marine animals (Mussismilia hispida, Phyllogorgia dilatata, Palythoa caribaeorum, Palythoa variabilis and Litopenaeus vannamei). Int J Syst Evol Microbiol 61, 362-368.
4. Jakobsen, I.B. and Easteal, S. (1996) A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences. Comput Appl Biosci 12, 291-295.
5. Katoh, K., Misawa, K., Kuma, K. and Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30, 3059-3066.
6. Lin, B., Wang, Z., Malanoski, A.P., O'Grady, E.A., Wimpee, C.F., Vuddhakul, V., Alves, N. Jr, Thompson, F.L. et al. (2010) Comparative genomic analyses identify the Vibrio harveyi genome sequenced strains BAA-1116 and HY01 as Vibrio campbellii. Environ Microbiol Rep 2, 81-89.
7. Pascual, J., Macian, M.C., Arahal, D.R., Garay, E. and Pujalte, M.J. (2010) Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes. Int J Syst Evol Microbiol 60, 154-165.
8. Swofford, D.L. (2003) PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods), Version 4.0b10. Sunderland, MA: Sinauer Associates.
9. Tamura, K., Dudley, J., Nei, M. and Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
10. Thompson, F.L., Iida, T. and Swings, J. (2004) Biodiversity of vibrios. Microbiol Mol Biol Rev 68, 403-431.
11. Thompson, F.L., Gomez-Gil, B., Vasconcelos, A.T. and Sawabe, T. (2007) Multilocus sequence analysis reveals that Vibrio harveyi and V. campbellii are distinct species. Appl Environ Microbiol 73, 4279-4285.
12. Thompson, C.C., Vicente, A.C., Souza, R.C., Vasconcelos, A.T., Vesth, T., Alves, N. Jr, Ussery, D.W., Iida, T. et al. (2009) Genomic taxonomy of vibrios. BMC Evol Biol 9, 258.
13. Yoshizawa, S., Wada, M., Yokota, A. and Kogure, K. (2010) Vibrio sagamiensis sp. nov., luminous marine bacteria isolated from sea water. J Gen Appl Microbiol 56, 499-507.