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Volumn 78, Issue 2, 2012, Pages 318-325

Abundance and composition of epiphytic bacterial and archaeal ammonia oxidizers of marine red and brown macroalgae

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA; ALGAL SPECIES; AMMONIA OXIDATION; AMMONIA OXIDIZERS; AMMONIA OXIDIZING BACTERIA; ARCHAEA; ARCHAEAL; BALEARIC ISLANDS; ECOLOGICAL NICHE; GENE CLONE LIBRARIES; LOW DISSOLVED OXYGEN; MACRO-ALGAE; MARINE ECOSYSTEM; MARINE ENVIRONMENT; MARINE MACROALGAE; NITROGEN CYCLING; NITROSOMONAS EUROPAEA; OPERATIONAL TAXONOMIC UNITS; OXYGEN-RICH ENVIRONMENT; QUANTITATIVE PCR; WESTERN MEDITERRANEAN SEA;

EID: 84855754193     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05904-11     Document Type: Article
Times cited : (47)

References (56)
  • 1
    • 0027027861 scopus 로고
    • Els fons rocosos profunds amb Osmundaria volubilis (Linné) R. E. Norris a les Balears
    • Ballesteros E. 1992. Els fons rocosos profunds amb Osmundaria volubilis (Linné) R. E. Norris a les Balears. Boll. Soc. Hist. Nat. Balears 35:35-50.
    • (1992) Boll. Soc. Hist. Nat. Balears , vol.35 , pp. 35-50
    • Ballesteros, E.1
  • 2
    • 52949133356 scopus 로고    scopus 로고
    • Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina aerophoba
    • Bayer K, Schmitt S, Hentschel U. 2008. Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina aerophoba. Environ. Microbiol. 10:2942-2955.
    • (2008) Environ. Microbiol. , vol.10 , pp. 2942-2955
    • Bayer, K.1    Schmitt, S.2    Hentschel, U.3
  • 3
    • 34548492476 scopus 로고    scopus 로고
    • Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals
    • Beman JM, Roberts KJ, Wegley L, Rohwer F, Francis CA. 2007. Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals. Appl. Environ. Microbiol. 73:5642-5647.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5642-5647
    • Beman, J.M.1    Roberts, K.J.2    Wegley, L.3    Rohwer, F.4    Francis, C.A.5
  • 5
    • 24044435252 scopus 로고    scopus 로고
    • The European Water Framework Directive: a challenge for nearshore, coastal and continental shelf research
    • Borja A. 2005. The European Water Framework Directive: a challenge for nearshore, coastal and continental shelf research. Cont. Shelf Res. 25: 1768-1783.
    • (2005) Cont. Shelf Res. , vol.25 , pp. 1768-1783
    • Borja, A.1
  • 6
    • 39149118031 scopus 로고    scopus 로고
    • Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
    • Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P. 2008. Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat. Rev. Microbiol. 6:245-252.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 245-252
    • Brochier-Armanet, C.1    Boussau, B.2    Gribaldo, S.3    Forterre, P.4
  • 7
    • 79953029749 scopus 로고    scopus 로고
    • Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis
    • Burke C, Thomas T, Lewis M, Steinberg P, Kjelleberg S. 2011. Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis. ISME J. 5:590-600.
    • (2011) ISME J , vol.5 , pp. 590-600
    • Burke, C.1    Thomas, T.2    Lewis, M.3    Steinberg, P.4    Kjelleberg, S.5
  • 8
    • 35948999268 scopus 로고    scopus 로고
    • Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia
    • Caffrey JM, Bano N, Kalanetra K, Hollibaugh JT. 2007. Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J. 1:660-662.
    • (2007) ISME J , vol.1 , pp. 660-662
    • Caffrey, J.M.1    Bano, N.2    Kalanetra, K.3    Hollibaugh, J.T.4
  • 9
    • 0001463548 scopus 로고
    • Non parametric estimation of the number of classes in a population
    • Chao A. 1984. Non parametric estimation of the number of classes in a population. Scand. J. Stat. 11:265-270.
    • (1984) Scand. J. Stat. , vol.11 , pp. 265-270
    • Chao, A.1
  • 10
    • 0004182073 scopus 로고
    • Cambridge University Press, Cambridge, United Kingdom
    • Cole KM, Sheath RG. 1990. Biology of red algae. Cambridge University Press, Cambridge, United Kingdom.
    • (1990) Biology of red algae
    • Cole, K.M.1    Sheath, R.G.2
  • 12
    • 0006188211 scopus 로고
    • Les Laminariaceés de la Méditerranée et leur répartition géographique
    • Feldmann J. 1934. Les Laminariaceés de la Méditerranée et leur répartition géographique. Bull. Trav. Stat. Aquic. Péche Castiglione Alg. 2:143-184.
    • (1934) Bull. Trav. Stat. Aquic. Péche Castiglione Alg. , vol.2 , pp. 143-184
    • Feldmann, J.1
  • 14
    • 33749575671 scopus 로고
    • Popolamenti a Laminaria rodriguezii Bornet sul Banco Apollo dell'isola di Ustica (Mar Tirreno)
    • Giaccone G. 1967. Popolamenti a Laminaria rodriguezii Bornet sul Banco Apollo dell'isola di Ustica (Mar Tirreno). Nova Thalassia 3:1-9.
    • (1967) Nova Thalassia , vol.3 , pp. 1-9
    • Giaccone, G.1
  • 15
    • 77954113742 scopus 로고    scopus 로고
    • Chemical interactions between marine macroalgae and bacteria
    • Goecke F, Labes A, Wiese J, Imhoff J. 2010. Chemical interactions between marine macroalgae and bacteria. Mar. Ecol. Prog. Ser. 409: 267-300.
    • (2010) Mar. Ecol. Prog. Ser. , vol.409 , pp. 267-300
    • Goecke, F.1    Labes, A.2    Wiese, J.3    Imhoff, J.4
  • 16
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 17
    • 67349287510 scopus 로고    scopus 로고
    • Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment
    • Hallin S, Jones CM, Schloter M, Philippot L. 2009. Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment. ISME J. 3:597-605.
    • (2009) ISME J , vol.3 , pp. 597-605
    • Hallin, S.1    Jones, C.M.2    Schloter, M.3    Philippot, L.4
  • 18
    • 66249103693 scopus 로고    scopus 로고
    • Effect of lake trophic status and rooted macrophytes on community composition and abundance of ammonia-oxidizing prokaryotes in freshwater sediments
    • Herrmann M, Saunders AM, Schramm A. 2009. Effect of lake trophic status and rooted macrophytes on community composition and abundance of ammonia-oxidizing prokaryotes in freshwater sediments. Appl. Environ. Microbiol. 75:3127-3136.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 3127-3136
    • Herrmann, M.1    Saunders, A.M.2    Schramm, A.3
  • 20
    • 74149086631 scopus 로고    scopus 로고
    • Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment
    • Junier P, et al. 2010. Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment. Appl. Microbiol. Biotechnol. 85:425-440.
    • (2010) Appl. Microbiol. Biotechnol. , vol.85 , pp. 425-440
    • Junier, P.1
  • 21
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner MB, DeLong EF, Karl DM. 2001. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409:507-510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 23
    • 42049108808 scopus 로고    scopus 로고
    • Cultivation-independent characterization of methylobacterium populations in the plant phyllosphere by automated ribosomal intergenic spacer analysis
    • Knief C, Frances L, Cantet F, Vorholt JA. 2008. Cultivation-independent characterization of methylobacterium populations in the plant phyllosphere by automated ribosomal intergenic spacer analysis. Appl. Environ. Microbiol. 74:2218-2228.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2218-2228
    • Knief, C.1    Frances, L.2    Cantet, F.3    Vorholt, J.A.4
  • 24
    • 25644435673 scopus 로고    scopus 로고
    • Isolation of an autotrophic ammonia-oxidizing marine archaeon
    • Könneke M, et al. 2005. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437:543-546.
    • (2005) Nature , vol.437 , pp. 543-546
    • Könneke, M.1
  • 25
    • 65549154344 scopus 로고    scopus 로고
    • Specific epibacterial communities on macroalgae: phylogeny matters more than habitat
    • Lachnit T, Blumel M, Imhoff JF, Wahl M. 2009. Specific epibacterial communities on macroalgae: phylogeny matters more than habitat. Aquat. Biol. 5:181-186.
    • (2009) Aquat. Biol. , vol.5 , pp. 181-186
    • Lachnit, T.1    Blumel, M.2    Imhoff, J.F.3    Wahl, M.4
  • 26
    • 79952088423 scopus 로고    scopus 로고
    • Epibacterial community patterns on marine macroalgae are host-specific but temporally variable
    • Lachnit T, Meske D, Wahl M, Harder T, Schmitz R. 2011. Epibacterial community patterns on marine macroalgae are host-specific but temporally variable. Environ. Microbiol. 13:655-665.
    • (2011) Environ. Microbiol. , vol.13 , pp. 655-665
    • Lachnit, T.1    Meske, D.2    Wahl, M.3    Harder, T.4    Schmitz, R.5
  • 27
    • 77949887158 scopus 로고    scopus 로고
    • Isolated thallus-associated compounds from the macroalga Fucus vesiculosus mediate bacterial surface colonization in the field similar to that on the natural alga
    • Lachnit T, Wahl M, Harder T. 2010. Isolated thallus-associated compounds from the macroalga Fucus vesiculosus mediate bacterial surface colonization in the field similar to that on the natural alga. Biofouling 26:247-255.
    • (2010) Biofouling , vol.26 , pp. 247-255
    • Lachnit, T.1    Wahl, M.2    Harder, T.3
  • 28
    • 33747479446 scopus 로고    scopus 로고
    • Archaea predominate among ammoniaoxidizing prokaryotes in soils
    • Leininger S, et al. 2006. Archaea predominate among ammoniaoxidizing prokaryotes in soils. Nature 442:806-809.
    • (2006) Nature , vol.442 , pp. 806-809
    • Leininger, S.1
  • 29
    • 42149148684 scopus 로고    scopus 로고
    • Comparisons of diversity of bacterial communities associated with three sessile marine eukaryotes
    • Longford SR, et al. 2007. Comparisons of diversity of bacterial communities associated with three sessile marine eukaryotes. Aquat. Microb. Ecol. 48:217-229.
    • (2007) Aquat. Microb. Ecol. , vol.48 , pp. 217-229
    • Longford, S.R.1
  • 30
    • 2342501363 scopus 로고    scopus 로고
    • Quantification of a novel group of nitrate-reducing bacteria in the environment by real-time PCR
    • Lopez-Gutierrez JC, et al. 2004. Quantification of a novel group of nitrate-reducing bacteria in the environment by real-time PCR. J. Microbiol. Methods 57:399-407.
    • (2004) J. Microbiol. Methods , vol.57 , pp. 399-407
    • Lopez-Gutierrez, J.C.1
  • 32
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. 2005. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71: 8228-8235.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 33
    • 0001094363 scopus 로고
    • Aspects of diversity measurement for microbial communities
    • Mills AL, Wassel RA. 1980. Aspects of diversity measurement for microbial communities. Appl. Environ. Microbiol. 40:578-586.
    • (1980) Appl. Environ. Microbiol. , vol.40 , pp. 578-586
    • Mills, A.L.1    Wassel, R.A.2
  • 34
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    • Mincer TJ, et al. 2007. Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ. Microbiol. 9:1162-1175.
    • (2007) Environ. Microbiol. , vol.9 , pp. 1162-1175
    • Mincer, T.J.1
  • 35
    • 73449144736 scopus 로고    scopus 로고
    • Diversity of aerobic and anaerobic ammonia-oxidizing bacteria in marine sponges
    • Mohamed NM, Saito K, Tal Y, Hill RT. 2010. Diversity of aerobic and anaerobic ammonia-oxidizing bacteria in marine sponges. ISME J. 4:38-48.
    • (2010) ISME J , vol.4 , pp. 38-48
    • Mohamed, N.M.1    Saito, K.2    Tal, Y.3    Hill, R.T.4
  • 36
    • 52949134066 scopus 로고    scopus 로고
    • Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary
    • Mosier AC, Francis CA. 2008. Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary. Environ. Microbiol. 10:3002-3016.
    • (2008) Environ. Microbiol. , vol.10 , pp. 3002-3016
    • Mosier, A.C.1    Francis, C.A.2
  • 37
    • 0029097821 scopus 로고
    • Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Muyzer G, Teske A, Wirsen CO, Jannasch HW. 1995. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164:165-172.
    • (1995) Arch. Microbiol. , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.O.3    Jannasch, H.W.4
  • 38
    • 0042853314 scopus 로고    scopus 로고
    • Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
    • Ochsenreiter T, Selezi D, Quaiser A, Bonch-Osmolovskaya L, Schleper C. 2003. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ. Microbiol. 5:787-797.
    • (2003) Environ. Microbiol. , vol.5 , pp. 787-797
    • Ochsenreiter, T.1    Selezi, D.2    Quaiser, A.3    Bonch-Osmolovskaya, L.4    Schleper, C.5
  • 39
    • 77953276894 scopus 로고    scopus 로고
    • Microbial ecology of corals, sponges, and algae in mesophotic coral environments
    • Olson JB, Kellogg CA. 2010. Microbial ecology of corals, sponges, and algae in mesophotic coral environments.FEMSMicrobiol. Ecol. 73:17-30.
    • (2010) FEMSMicrobiol. Ecol. , vol.73 , pp. 17-30
    • Olson, J.B.1    Kellogg, C.A.2
  • 41
    • 52949113790 scopus 로고    scopus 로고
    • Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment
    • Prosser JI, Nicol GW. 2008. Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ. Microbiol. 10:2931-2941.
    • (2008) Environ. Microbiol. , vol.10 , pp. 2931-2941
    • Prosser, J.I.1    Nicol, G.W.2
  • 42
    • 0034466757 scopus 로고    scopus 로고
    • Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys
    • Purkhold U, et al. 2000. Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl. Environ. Microbiol. 66:5368-5382.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5368-5382
    • Purkhold, U.1
  • 44
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe JH, Witzel KP, Liesack W. 1997. The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63:4704-4712.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4704-4712
    • Rotthauwe, J.H.1    Witzel, K.P.2    Liesack, W.3
  • 45
    • 78349282589 scopus 로고    scopus 로고
    • Ammonia-oxidising archaea-physiology, ecology and evolution
    • Schleper C, Nicol GW. 2010. Ammonia-oxidising archaea-physiology, ecology and evolution. Adv. Microb. Physiol. 57:1-41.
    • (2010) Adv. Microb. Physiol. , vol.57 , pp. 1-41
    • Schleper, C.1    Nicol, G.W.2
  • 46
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platformindependent, community-supported software for describing and comparing microbial communities
    • Schloss PD, et al. 2009. Introducing mothur: open-source, platformindependent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 48
    • 40949114719 scopus 로고    scopus 로고
    • Diversity and mode of transmission of ammoniaoxidizing archaea in marine sponges
    • Steger D, et al. 2008. Diversity and mode of transmission of ammoniaoxidizing archaea in marine sponges. Environ. Microbiol. 10:1087-1094.
    • (2008) Environ. Microbiol. , vol.10 , pp. 1087-1094
    • Steger, D.1
  • 49
    • 78649713696 scopus 로고    scopus 로고
    • Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment
    • Stopnišek N, et al. 2010. Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment. Appl. Environ. Microbiol. 76:7626-7634.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 7626-7634
    • Stopnišek, N.1
  • 50
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4 0
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 51
    • 41849095617 scopus 로고    scopus 로고
    • Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms
    • Tourna M, Freitag TE, Nicol GW, Prosser JI. 2008. Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ. Microbiol. 10:1357-1364.
    • (2008) Environ. Microbiol. , vol.10 , pp. 1357-1364
    • Tourna, M.1    Freitag, T.E.2    Nicol, G.W.3    Prosser, J.I.4
  • 52
    • 79957684288 scopus 로고    scopus 로고
    • Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
    • Tourna M, et al. 2011. Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc. Natl. Acad. Sci. U. S. A. 108:8420-8425.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 8420-8425
    • Tourna, M.1
  • 53
    • 76349114726 scopus 로고    scopus 로고
    • Variability and abundance of the epiphytic bacterial community associated with a green marine Ulvacean alga
    • Tujula NA, et al. 2010. Variability and abundance of the epiphytic bacterial community associated with a green marine Ulvacean alga. ISME J. 4:301-311.
    • (2010) ISME J , vol.4 , pp. 301-311
    • Tujula, N.A.1
  • 54
    • 84874826065 scopus 로고    scopus 로고
    • Instituto Español de Oceanografía, Ministerio de Ciencia e Innovación, Madrid, Spain
    • Vargas-Yáñez M. 2010. Cambio climático en el mediterráneo español. Instituto Español de Oceanografía, Ministerio de Ciencia e Innovación, Madrid, Spain.
    • (2010) Cambio climático en el mediterráneo español
    • Vargas-Yáñez, M.1
  • 55
    • 33747596691 scopus 로고    scopus 로고
    • Archaeal nitrification in the ocean
    • Wuchter C, et al. 2006. Archaeal nitrification in the ocean. Proc. Natl. Acad. Sci. U. S. A. 103:12317-12322.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 12317-12322
    • Wuchter, C.1
  • 56
    • 0036195362 scopus 로고    scopus 로고
    • Nitrogen cycling in the ocean: new perspectives on processes and paradigms
    • Zehr JP, Ward BB. 2002. Nitrogen cycling in the ocean: new perspectives on processes and paradigms. Appl. Environ. Microbiol. 68:1015-1024.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1015-1024
    • Zehr, J.P.1    Ward, B.B.2


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