Isolation of bacteria capable of growth with 2-methylisoborneol and geosmin as the sole carbon and energy sources

Applied and Environmental Microbiology

Volumn 78, Issue 2, 2012, Pages 363-370

  Guttman, Lior ^a   van Rijn, Jaap ^a  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA GENE SEQUENCE; 2-METHYLISOBORNEOL; AEROBIC CONDITION; CARBON SOURCE; DIGESTION BASINS; ENERGY SOURCE; ENRICHMENT TECHNIQUES; FLUORESCENCE IN SITU HYBRIDIZATION; GEOSMIN; ISOLATION OF BACTERIA; REMOVAL RATE; RHODOCOCCUS; SOLE CARBON;

BACTERIA; BOTTLES; CARBON; FLUORESCENCE MICROSCOPY; GENES; RNA; SLUDGE DIGESTION;

ECOLOGY;

2 METHYLISOBORNEOL; 2-METHYLISOBORNEOL; BACTERIAL DNA; BORNANE DERIVATIVE; CARBON; GEOSMIN; NAPHTHOL DERIVATIVE; RIBOSOME DNA; RNA 16S;

AERATION; AQUACULTURE SYSTEM; BACTERIUM; BIODEGRADATION; DIGESTION; GENETIC ANALYSIS; GROWTH RATE; INCUBATION; MICROBIAL ECOLOGY; ORGANIC COMPOUND; OXIC CONDITIONS; POLLUTANT REMOVAL;

ARTICLE; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; COMAMONADACEAE; COMAMONAS; DNA SEQUENCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; RHODOCOCCUS; WATER POLLUTANT;

BORNANES; CARBON; CLUSTER ANALYSIS; COMAMONADACEAE; COMAMONAS; DNA, BACTERIAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; NAPHTHOLS; PHYLOGENY; RHODOCOCCUS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; WATER MICROBIOLOGY; WATER POLLUTANTS;

COMAMONADACEAE; COMAMONAS; NEGIBACTERIA; POSIBACTERIA; RHODOCOCCUS; VARIOVORAX;

EID: 84855735286     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.06333-11     Document Type: Article

References (50)

1. Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
2. Amann R, et al. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
3. Amann R, Ludwig W, Schleifer KH. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
4. Amann R, et al. 1996. rRNA-targeted oligonucleotide probes for the identification of genuine and former pseudomonads. Syst. Appl. Microbiol. 19:501-509.
5. American Public Health Association. 1992. Standard methods for the examination of water and wastewater, 18th ed. American Public Health Association, Washington, DC.
6. Cook D, Newcombe G, Sztajnbok P. 2001. The application of powdered activated carbon for MIB and geosmin removal: predicting PAC doses in four raw waters. Water Res. 35:1325-1333.
7. Cui MC, Chen FZ, Fu JM, Sheng GY, Sun GP. 2004. Microbial metabolism of quinoline by Comamonas sp. W. J. Microbiol. Biotechnol. 20: 539-543.
8. Daims H, Brühl A, Amann R, Schleifer KH, Wagner M. 1999. The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22:434-444.
9. Del Giorgio PA, Cole JJ. 1998. Bacterial growth efficiency in natural aquatic systems. Annu. Rev. Ecol. Syst. 29:503-541.
10. Drikas M, Dixon M, Morran J. 2009. Removal of MIB and geosmin using granular activated carbon with and without MIEX pre-treatment. Water Res. 43:5151-5159.
11. Eaton RW, Sandusky P. 2009. Biotransformations of 2-methylisoborneol by camphor-degrading bacteria. Appl. Environ. Microbiol. 75:583-588.
12. Eaton RW, Sandusky P. 2010. Biotransformations of (+/-)-geosmin by terpene-degrading bacteria. Biodegradation 21:71-79.
13. Elhadi SLN, Huck PM, Slawson RM. 2006. Factors affecting the removal of geosmin and MIB in drinking water biofilters. J. Am. Water Works Assoc. 98:108-119.
14. Engle CR, Pounds GL, Van der Ploeg M. 1995. The cost of off-flavor. J. World Aquacult. Soc. 26:297-306.
15. Gelfand I, et al. 2003. A novel zero-discharge intensive seawater recirculating system for culture of marine fish. J. World Aquacult. Soc. 34: 344-358.
16. Guttman L, van Rijn J. 2008. Identification of conditions underlying production of geosmin and 2-methylisoborneol in a recirculating system. Aquaculture 279:85-91.
17. Guttman L, van Rijn J. 2009. 2-Methylisoborneol and geosmin uptake by organic sludge derived from a recirculating aquaculture system. Water Res. 43:474-480.
18. Halvorson HO, Ziegler NR. 1933. Application of statistics to problems in bacteriology. I. A means of determining bacteriological populations by the dilution method. J. Bacteriol. 25:101-121.
19. Ho L, Hoefel D, Bock F, Saint CP, Newcombe G. 2007. Biodegradation rates of 2-methylisoborneol (MIB) and geosmin through sand filters and in bioreactors. Chemosphere 66:2210-2218.
20. Hoefel D, et al. 2006. Cooperative biodegradation of geosmin by a consortium comprising three gram-negative bacteria isolated from the biofilm of a sand filter column. Lett. Appl. Microbiol. 43:417-423.
21. Hoefel D, Ho L, Monis PT, Newcombe G, Saint CP. 2009. Biodegradation of geosmin by a novel Gram-negative bacterium; isolation, phylogenetic characterization and degradation rate determination. Water Res. 43:2927-2935.
22. Howgate P. 2004. Tainting of farmed fish by geosmin and 2-methyl-isoborneol: a review of sensory aspects and uptake/depuration. Aquaculture 234:155-181.
23. Ishida H, Miyaji Y. 1992. Biodegradation of 2-methylisoborneol by oligotrophic bacterium isolated from a eutrophied lake. Water Sci. Technol. 25:269-276.
24. Izaguirre G, Wolfe RL, Means EG. 1988. Degradation of 2-methylisoborneol by aquatic bacteria. Appl. Environ. Microbiol. 54:2424-2431.
25. Jüttner F, Watson SB. 2007. Biochemical and ecological control of geosmin and 2-methylisoborneol in source waters. Appl. Environ. Microbiol. 73:4395-4406.
26. Kim D, et al. 2002. Monocyclic aromatic hydrocarbon degradation by Rhodococcus sp. strain DK17. Appl. Environ. Microbiol. 68:3270-3278.
27. Koch AL. 1981. Growth measurement, p 179-207. In Gerhardt P, et al (ed), Manual of methods for general bacteriology. American Society for Microbiology, Washington, DC.
28. Kyselkova M, et al. 2008. Development of a 16S rRNA gene-based prototype microarray for the detection of selected actinomycetes genera. Antonie Van Leeuwenhoek 94:439-453.
29. Lane DJ. 1991. 16S/23S rRNA sequencing, p 115-175. In Stackebrandt E, GoodfellowM(ed), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
30. Lauderdale CV, Aldrich HC, Lindner AS. 2004. Isolation and characterization of a bacterium capable of removing taste- and odor-causing 2-methylisoborneol from water. Water Res. 38:4135-4142.
31. Lloyd SW, Lea JM, Zimba PV, Grimm CC. 1998. Rapid analysis of geosmin and 2-methylisoborneol in water using solid phase micro extraction procedures. Water Res. 32:2140-2146.
32. McDowall B, Ho L, Saint CP, Newcombe G. 2007. Removal of geosmin and 2-methylisoborneol through biologically active sand filters. Int. J. Environ. Water Management 1:311-320.
33. Miller JH. 1971. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
34. Muyzer G, de Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
35. Narayan IV, Nunez WJ. 1974. Biological control: isolation and bacterial oxidation of the taste and odor compound geosmin. J. Am. Water Works Assoc. 66:32-536.
36. Nishino SF, Spain JC. 1995. Oxidative pathway for the biodegradation of nitrobenzene by Comamonas sp. strain JS765. Appl. Environ. Microbiol. 61:2308-2313.
37. Nishino SF, Spain JC. 2006. Biodegradation of 3-nitrotyrosine by Burkholderia sp. strain JS165 and Variovorax paradoxus JS171. Appl. Environ. Microbiol. 72:1040-1044.
38. Norland S, Heldal M, Tumyr O. 1987. On the relation between dry matter and volume of bacteria. Microb. Ecol. 13:95-101.
39. Persson F, Heinecke G, Hedberg T, Hermansson M, Uhl W. 2007. Removal of geosmin and MIB by biofiltration-an investigation discriminating between adsorption and biodegradation. Environ. Technol. 28: 95-104.
40. Roller C, Wagner M, Amann R, Ludwig W, Schleifer KH. 1994. In situ probing of Gram-positive bacteria with highDNAG+Ccontent using 23S rRNA-targeted oligonucleotides. Microbiology 140:2849-2858.
41. Saadoun I, El-Migdadi F. 1998. Degradation of geosmin-like compounds by selected species of Gram-positive bacteria. Lett. Appl. Microbiol. 29: 98-100.
42. Saito A, Tokuyama T, Tanaka A, Oritani T, Fuchigami K. 1999. Microbiological degradation of (-)geosmin. Water Res. 33:3033-3036.
43. Sanguin H, et al. 2006. Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Environ. Microbiol. 8:289-307.
44. Silvey JKG, Henley AW, Nunez WJ and Cohen RC. 1970. Biological control: control of naturally occurring taste and odors by microorganisms. Proceedings of the National Biological Congress, Detroit, MI.
45. Stanier JY, Kunisawa R, Mandel M, Cohen-Bazire G. 1971. Purification and properties of unicellular blue-green algae (order Chroococcales). Bacteriol. Rev. 35:171-205.
46. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
47. Tanaka A, et al. 1996. Biodegradation of musty odour component, 2-methylisoborneol. Water Res. 30:759-761.
48. Trudgill PW. 1984. Microbial degradation of the alicyclic ring: structural relationships and metabolic pathways, p 131-180. In Gibson DT (ed), Microbial degradation of organic compounds. Marcel Dekker, Inc, New York, NY.
49. Tucker CS. 2000. Off-flavor problems in aquaculture. Rev. Fish. Sci. 8:45-88.
50. Yagi M, Nakashima S, Muramoto S. 1988. Biological degradation of musty odour compounds, 2-methylisoborneol and geosmin, in a bioactivated carbon filter. Water Sci. Technol. 20:255-260.