Analysis of polymorphism and transcription of the effector gene Avr1b in Phytophthora sojae isolates from China virulent to Rps1b

Molecular Plant Pathology

Volumn 13, Issue 2, 2012, Pages 114-122

  Cui, Linkai ^a   Yin, Weixiao ^a   Dong, Suomeng ^a   Wang, Yuanchao ^a  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ALLELE; AMINO ACID SEQUENCE; ARTICLE; BIOLOGY; CHEMISTRY; CHINA; GENE; GENE DELETION; GENE EXPRESSION REGULATION; GENETIC POLYMORPHISM; GENETIC TRANSCRIPTION; GENETICS; GENOME; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PATHOGENICITY; PHYTOPHTHORA; PLANT DISEASE; SEQUENCE HOMOLOGY; VIRULENCE;

ALLELES; AMINO ACID SEQUENCE; CHINA; COMPUTATIONAL BIOLOGY; GENE DELETION; GENE EXPRESSION REGULATION; GENES; GENOME; MOLECULAR SEQUENCE DATA; PHYTOPHTHORA; PLANT DISEASES; POLYMORPHISM, GENETIC; PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION, GENETIC; VIRULENCE;

GLYCINE MAX; PHYTOPHTHORA; PHYTOPHTHORA SOJAE;

EID: 84855730977     PISSN: 14646722     EISSN: 13643703     Source Type: Journal    
DOI: 10.1111/j.1364-3703.2011.00733.x     Document Type: Article

References (33)

1. Burnham, K.D., Dorrance, A.E., Francis, D.M., Fioritto, R.J. and St-Martin, S.K. (2003) Rps8, a new locus in soybean for resistance to Phytophthora sojae. Crop Sci. 43, 101-105.
2. Chen, X.R., Shen, G., Wang, Y.L., Zheng, X.B. and Wang, Y.C. (2007) Identification of Phytophthora sojae genes upregulated during the early stage of soybean infection. FEMS Microbiol. Lett. 269, 280-288.
3. Cui, L.K., Yin, W.X., Tang, Q.H., Dong, S.M., Zheng, X.B., Zhang, Z.G. and Wang, Y.C. (2010) Distribution, pathotypes, and metalaxyl sensitivity of Phytophthora sojae from Heilongjiang and Fujian provinces in China. Plant Dis. 94, 881-884.
4. Dong, S., Qutob, D., Tedman-Jones, J., Kuflu, K., Wang, Y., Tyler, B.M. and Gijzen, M. (2009) The Phytophthora sojae avirulence locus Avr3c encodes a multi-copy RXLR effector with sequence polymorphisms among different pathogen strains. PLoS ONE, 4, e5556.
5. Dou, D., Kale, S.D., Wang, X., Chen, Y., Wang, Q., Wang, X., Jiang, R.H.Y., Arredondo, F.D., Anderson, R.G., Thakur, P.B., McDowell, J.M.L., Wang, Y. and Tyler, B.M. (2008a) Conserved C-terminal motifs required for avirulence and suppression of cell death by Phytophthora sojae effector Avr1b. Plant Cell, 20, 1118-1133.
6. Dou, D., Kale, S.D., Wang, X., Jiang, R.H.Y., Bruce, N.A., Arredondo, F.D., Zhang, X. and Tyler, B.M. (2008b) RXLR-mediated entry of Phytophthora sojae effector Avr1b into soybean cells does not require pathogen-encoded machinery. Plant Cell, 20, 1930-1947.
7. Dou, D., Kale, S.D., Liu, T., Tang, Q., Wang, X., Arredondo, F.D., Basnayake, S., Whisson, S., Drenth, A., Maclean, D. and Tyler, B.M. (2010) Different domains of Phytophthora sojae effector Avr4/6 are recognized by soybean resistance genes Rps4 and Rps6. Mol. Plant-Microbe Interact. 23, 425-435.
8. Farman, M.L., Eto, Y., Nakao, T., Tosa, Y., Nakayashiki, H., Mayama, S. and Leong, S.A. (2002) Analysis of the structure of the AVR1-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea. Mol. Plant-Microbe Interact. 15, 6-16.
9. Förster, H., Tyler, B.M. and Coffey, M.D. (1994) Phytophthora sojae races have arisen by clonal evolution and by rare outcrosses. Mol. Plant-Microbe Interact. 7, 780-791.
10. Gao, H., Narayanan, N.N., Ellison, L. and Bhattacharyya, M.K. (2005) Two classes of highly similar coiled coil-nucleotide binding-leucine rich repeat genes isolated from the Rps1-k locus encode Phytophthora resistance in soybean. Mol Plant-Microbe Interact. 18, 1035-1045.
11. Jackson, T.A., Kirkpatrick, T.L. and Rupe, J.C. (2004) Races of Phytophthora sojae in Arkansas soybean fields and their effects on commonly grown soybean cultivars. Plant Dis. 88, 345-351.
12. Kang, S., Lebrun, M.H., Farrall, L. and Valent, B. (2001) Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene. Mol. Plant-Microbe Interact. 14, 671-674.
13. Kohany, O., Gentles, A.J., Hankus, L. and Jurka, J. (2006) Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics, 7, 474.
14. May, K.J., Whisson, S.C., Zwart, R.S., Searle, I.R., Irwin, J.A.G., Maclean, D.J., Carroll, B.J. and Drenth, A. (2002) Inheritance and mapping of eleven avirulence genes in Phytophthora sojae. Fungal Genet. Biol. 37, 1-12.
15. Ochman, H., Gerber, A.S. and Hart, D.L. (1988) Genetic applications of an inverse polymerase chain reaction. Genetics, 120, 621-623.
16. Qutob, D., Tedman-Jones, J., Dong, S., Kuflu, K., Pham, H., Wang, Y., Dou, D., Kale, S.D., Arredondo, F.D., Tyler, B.M. and Gijzen, M. (2009) Copy number variation and transcriptional polymorphisms of Phytophthora sojae RXLR effector genes Avr1a and Avr3a. PLoS ONE, 4, e5066.
17. Raffaele, S., Win, J., Cano, L.M. and Kamoun, S. (2010) Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans. BMC Genomics, 11, 637.
18. Ryley, M.J., Obst, N.R., Irwin, J.A.G. and Drenth, A. (1998) Changes in the racial composition of Phytophthora sojae in Australia between 1979 and 1996. Plant Dis. 82, 1048-1054.
19. Shan, W.X., Cao, M., Dan, L.U. and Tyler, B.M. (2004) The Avr1b locus of Phytophthora sojae encodes an elicitor and a regulator required for avirulence on soybean plants carrying resistance gene Rps1b. Mol. Plant-Microbe Interact. 17, 394-403.
20. Stahl, E.A. and Bishop, J.G. (2000) Plant-pathogen arms races at the molecular level. Curr. Opin. Plant Biol. 3, 299-304.
21. Stergiopoulos, I., De Kock, M.J.D., Lindhout, P. and De Wit, P.J.G.M. (2007) Allelic variation in the effector genes of the tomato pathogen Cladosporium fulvum reveals different modes of adaptive evolution. Mol. Plant-Microbe Interact. 20, 1271-1283.
22. Stevens, C., Bennett, M.A., Athanassopoulos, E., Tsiamis, G., Taylor, J.D. and Mansfield, J.W. (1998) Sequence variations in alleles of the avirulence gene avrPphE.R2 from Pseudomonas syringae pv. phaseolicola lead to loss of recognition of the AvrPphE protein within bean cells and a gain in cultivar-specific virulence. Mol. Microbiol. 29, 165-177.
23. Tyler, B.M. (2007) Phytophthora sojae: root rot pathogen of soybean and model oomycete. Mol. Plant Pathol. 8, 1-8.
24. Tyler, B.M. (2008) Genomics of fungal-and oomycete-soybean interactions. In: Soybean Genomics (Stacey, G., ed.), pp. 243-267. New York: Springer.
25. Tyler, B.M., Forster, H. and Coffey, M.D. (1995) Inheritance of avirulence factors and restriction fragment length polymorphism markers in outcrosses of the oomycete Phytophthora sojae. Mol. Plant-Microbe Interact. 8, 515-523.
26. Tyler, B.M., Tripathy, S., Zhang, X., Dehal, P., Jiang, R.H.Y., Aerts, A., Arredondo, F.D., Baxter, L., Bensasson, D., Beynon, J.L., Chapman, J., Damasceno, C.M.B., Dorrance, A.E., Dou, D., Dickerman, A.W., Dubchak, I.L., Garbelotto, M., Gijzen, M., Gordon, S.G., Govers, F., Grunwald, N.J., Huang, W., Ivors, K.L., Jones, R.W., Kamoun, S., Krampis, K., Lamour, K.H., Lee, M.K., McDonald, W.H., Medina, M., Meijer, H.J.G., Nordberg, E.K., Maclean, D.J., Ospina-Giraldo, M.D., Morris, P.F., Phuntumart, V., Putnam, N.H., Rash, S., Rose, J.K.C., Sakihama, Y., Salamov, A.A., Savidor, A., Scheuring, C.F., Smith, B.M., Sobral, B.W.S., Terry, A., Torto-Alalibo, T.A., Win, J., Xu, Z., Zhang, H., Grigoriev, I.V., Rokhsar, D.S. and Boore, J.L. (2006) Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science, 313, 1254-1261.
27. Wang, Z.Y., Wang, Y.C., Zhang, Z.G. and Zheng, X.B. (2006) Genetic relationships among Chinese and American isolates of Phytophthora sojae assessed by RAPD markers. Chin. Sci. Bull. 51, 2095-2102.
28. Whisson, S.C., Boevink, P.C., Moleleki, L., Avrova, A.O., Morales, J.G., Gilroy, E.M., Armstrong, M.R., Grouffaud, S., West, P.V., Chapman, S., Hein, I., Toth, I.K., Pritchard, L. and Birch, P.R.J. (2007) A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature, 450, 115-119.
29. Win, J. and Kamoun, S. (2008) Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes. Plant Signal Behav. 3, 251-253.
30. Win, J., Morgan, W., Bos, J., Krasileva, K.V., Cano, L.M., Chaparro-Garcia, A., Ammar, R., Staskawicz, B.J. and Kamoun, S. (2007) Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes. Plant Cell, 19, 2349-2369.
31. Yang, Z. (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591.
32. Yang, Z., Wong, W.S. and Nielsen, R. (2005) Bayes empirical Bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22, 1107-1118.
33. Zhou, E., Jia, Y., Singh, P., Correll, J.C. and Lee, F.N. (2007) Instability of the Magnaporthe oryzae avirulence gene AVR-Pita alters virulence. Fungal Genet. Biol. 44, 1024-1034.