Amycolatopsis thermophila sp. nov. and amycolatopsis viridis sp. nov., thermophilic actinomycetes isolated from arid soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 1, 2012, Pages 168-172

  Zucchi, Tiago Domingues ^a   Tan Annie, Geok Yuan ^b   Goodfellow, Michael ^c  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

^c UNIVERSITY OF MALAYA   (Malaysia)

Author keywords

[No Author keywords available]

Indexed keywords

GENTAMICIN; NEOMYCIN; NOVOBIOCIN; PENICILLIN G; RNA 16S; STREPTOMYCIN SULFATE; VANCOMYCIN;

ACTINOBACTERIA; AMYCOLATOPSIS THERMOPHILA; AMYCOLATOPSIS VIRIDIS; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATION; CONTROLLED STUDY; GENOTYPE PHENOTYPE CORRELATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SOIL; TAXONOMY;

ACTINOMYCETALES; AUSTRALIA; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

ACTINOBACTERIA (CLASS); AMYCOLATOPSIS; AMYCOLATOPSIS METHANOLICA;

EID: 84855704797     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.029256-0     Document Type: Article

References (34)

1. Albarracín, V. H., Alonso-Vega, P., Trujillo, M. E., Amoroso, M. J. & Abate, C. M. (2010). Amycolatopsis tucumanensis sp. nov., a copperresistant actinobacterium isolated from polluted sediments. Int J Syst Evol Microbiol 60, 397-401.
2. Bian, J., Li, Y., Wang, J., Song, F. H., Liu, M., Dai, H. Q., Ren, B., Gao, H., Hu, X. & other authors (2009). Amycolatopsis marina sp. nov., an actinomycete isolated from an ocean sediment. Int J Syst Evol Microbiol 59, 477-481.
3. Brock, T. D. (1986). Introduction: an overview of the thermophiles. In Thermophiles: General, Molecular and Applied Microbiology, pp. 1-11. Edited by T. D. Brock. New York: John Wiley & Sons.
4. Chun, J., Kim, S. B., Oh, Y. K., Seong, C. N., Lee, D. H., Bae, K. S., Lee, K. J., Kang, S. O., Hah, Y. C. & Goodfellow, M. (1999). Amycolatopsis thermoflava sp. nov., a novel soil actinomycete from Hainan Island, China. Int J Syst Bacteriol 49, 1369-1373.
5. Cross, T. (1968). Thermophilic actinomycetes. J Appl Bacteriol 31, 36-53.
6. De Boer, L., Dijkhuizen, L., Grobben, G., Goodfellow, M., Stackebrandt, E., Parlett, J. H., Whitehead, D. & Witt, D. (1990). Amycolatopsis methanolica sp. nov., a facultatively methylotrophic actinomycete. Int J Syst Bacteriol 40, 194-204.
7. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for specific tree topology. Syst Zool 20, 406-416.
10. Goodfellow, M., Kim, S. B., Minnikin, D. E., Whitehead, D., Zhou, Z.-H. & Mattinson-Rose, A. D. (2001). Amycolatopsis sacchari sp. nov., a moderately thermophilic actinomycete isolated from vegetable matter. Int J Syst Evol Microbiol 51, 187-193.
11. Gordon, R. E. & Mihm, J. M. (1962). Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci 98, 628-636.
12. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
13. Huang, Y., Paściak, M., Liu, Z., Xie, Q. & Gamian, A. (2004). Amycolatopsis palatopharyngis sp. nov., a potentially pathogenic actinomycete isolated from a human clinical source. Int J Syst Evol Microbiol 54, 359-363.
14. Jones, K. L. (1949). Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141-145.
15. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
16. Kim, B., Sahin, N., Tan, G. Y. A., Zakrzewska-Czerwinska, J. & Goodfellow, M. (2002). Amycolatopsis eurytherma sp. nov., a thermophilic actinomycete isolated from soil. Int J Syst Evol Microbiol 52, 889-894.
17. Labeda, D. P., Donahue, J. M., Williams, N. M., Sells, S. F. & Henton, M. M. (2003). Amycolatopsis kentuckyensis sp. nov., Amycolatopsis lexingtonensis sp. nov. and Amycolatopsis pretoriensis sp. nov., isolated from equine placentas. Int J Syst Evol Microbiol 53, 1601-1605.
18. Labeda, D. P., Goodfellow, M., Chun, J., Zhi, X. Y. & Li, W. J. (2011). Reassessment of the systematics of the suborder Pseudonocardineae: transfer of the genera within the family Actinosynnemataceae Labeda and Kroppenstedt 2000 emend. Zhi et al. 2009 into an emended family Pseudonocardiaceae Embley et al. 1989 emend. Zhi et al. 2009. Int J Syst Evol Microbiol 61, 1259-1264.
19. Lechevalier, M. P. & Lechevalier, H. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
20. Lechevalier, M. P., De Bievre, C. & Lechevalier, H. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
21. Lechevalier, M. P., Prauser, H., Labeda, D. P. & Ruan, J.-S. (1986). Two new genera of nocardioform actinomycetes: Amycolata gen. nov. and Amycolatopsis gen. nov. Int J Syst Bacteriol 36, 29-37.
22. Lee, S. D. (2009). Amycolatopsis ultiminotia sp. nov., isolated from rhizosphere soil, and emended description of the genus Amycolatopsis. Int J Syst Evol Microbiol 59, 1401-1404.
23. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Schaal, K. P. (1985). Identification of clinically significant actinomycetes and related bacteria using chemical techniques. In Chemical Methods in Bacterial Systematics, pp. 359-381. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
26. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
27. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
28. Tan, G. Y. A., Ward, A. C. & Goodfellow, M. (2006a). Exploration of Amycolatopsis diversity in soil using genus-specific primers and novel selective media. Syst Appl Microbiol 29, 557-569.
29. Tan, G. Y. A., Robinson, S., Lacey, E. & Goodfellow, M. (2006b). Amycolatopsis australiensis sp. nov., an actinomycete isolated from arid soils. Int J Syst Evol Microbiol 56, 2297-2301.
30. Tan, G. Y. A., Robinson, S., Lacey, E., Brown, R., Kim, W. & Goodfellow, M. (2007). Amycolatopsis regifaucium sp. nov., a novel actinomycete that produces kigamicins. Int J Syst Evol Microbiol 57, 2562-2567.
31. Tseng, M., Yang, S.-F., Li, W.-J. & Jiang, C.-L. (2006). Amycolatopsis taiwanensis sp. nov., from soil. Int J Syst Evol Microbiol 56, 1811-1815.
32. Uchida, K., Kudo, T., Suzuki, K. I. & Nakase, T. (1999). A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45, 49-56.
33. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
34. Wink, J. M., Kroppenstedt, R. M., Ganguli, B. N., Nadkarni, S. R., Schumann, P., Seibert, G. & Stackebrandt, E. (2003). Three new antibiotic producing species of the genus Amycolatopsis, Amycolatopsis balhimycina sp. nov., A. tolypomycina sp. nov., A. vancoresmycina sp. nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov. and A. keratiniphila subsp. nogabecina subsp. nov. Syst Appl Microbiol 26, 38-46