Genetic diversity and species diversity of stream fishes covary across a land-use gradient

Oecologia

Volumn 168, Issue 1, 2012, Pages 83-95

  Blum, Michael J ^a,b   Bagley, Mark J ^b   Walters, David M ^b,c   Jackson, Suzanne A ^b   Daniel, F Bernard ^b   Chaloud, Deborah J ^b   Cade, Brian S ^c  

^a Tulane University   (United States)

^b U S ENVIRONMENTAL PROTECTION AGENCY   (United States)

^c FORT COLLINS SCIENCE CENTER   (United States)

Author keywords

Campostoma; Central stoneroller; Environmental assessment; Environmental filtering; Species genetic diversity correlation

Indexed keywords

AGROFORESTRY; ALLELE; DIVERGENCE; DRAINAGE BASIN; ENVIRONMENTAL ASSESSMENT; ENVIRONMENTAL CONDITIONS; FISH; GENETIC DIFFERENTIATION; GLACIATION; HETEROGENEITY; LAND USE; LIFE HISTORY; POPULATION SIZE; SPECIES DIVERSITY; SPECIES RICHNESS; STREAM;

AGRICULTURE; ANIMAL; ARTICLE; BIODIVERSITY; BIOLOGICAL MODEL; CYPRINIFORMES; FISH; GENE FREQUENCY; GENETIC VARIABILITY; GENETICS; PHYSIOLOGY; POPULATION DENSITY; POPULATION GENETICS; RIVER; TREE; UNITED STATES;

AGRICULTURE; ANIMALS; BIODIVERSITY; CYPRINIDAE; FISHES; GENE FREQUENCY; GENETIC VARIATION; GENETICS, POPULATION; MODELS, GENETIC; OHIO; POPULATION DENSITY; RIVERS; TREES;

OHIO; UNITED STATES;

CAMPOSTOMA; CAMPOSTOMA ANOMALUM; PISCES;

EID: 84855599919     PISSN: 00298549     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00442-011-2078-x     Document Type: Article

References (78)

1. Angermeier PL, Schlosser IJ (1989) Species-area relationships for stream fishes. Ecology 70: 1450-1462.
2. Angermeier PL, Winston MR (1999) Characterizing fish community diversity across Virginia landscapes: prerequisites for conservation. Ecol Appl 9: 335-349.
3. Antonovics J (1976) The input from population genetics: "the new ecological genetics". Syst Bot 1: 233-245.
4. Bagley MJ, Franson SE, Christ SA, Waits ER, Toth GP (2002) Genetic diversity as an indicator of ecosystem condition and sustainability: utility for regional assessments of stream condition in the eastern United States. EPA/600/R-03/056. US Environmental Protection Agency, Cincinnati.
5. Bagley MJ, Jackson SA, Franson SE, Waits ER (2004) Genetic diversity of stream fish in the Mid-Atlantic Integrated Assessment Area: implications for ecological monitoring and assessment programs. EPA/600/R-04/175. US Environmental Protection Agency, Cincinnati.
6. Bateman DS, Grasswell RE, Torgeson CE (2005) Evaluating single-pass catch as a tool for identifying spatial pattern in fish distribution. J Freshw Ecol 20: 335-346.
7. Blum MJ, Neely DA, Harris PM, Mayden RL (2008) Molecular systematics of the cyprinid genus Campostoma (Actinopterygii: Cypriniformes): disassociation between morphological and mitochondrial differentiation. Copeia 2: 360-369.
8. Cleary DFR, Fauvelot C, Genner MJ, Menken SBJ, Mooers AØ (2006) Parallel responses of species and genetic diversity to El Niño Southern Oscillation-induced environmental destruction. Ecol Lett 9: 304-310.
9. Costello AB, Down TE, Pollard SM, Pacas CJ, Taylor EB (2003) The influence of history and contemporary stream hydrology on the evolution of genetic diversity within species: an examination of microsatellite DNA variation in bull trout, Salvelinus confluentus (Pisces: Salmonidae). Evolution 57: 328-344.
10. Crispo E, Bentzen P, Reznick DN, Kinnison MT, Hendry AP (2006) The relative influence of natural selection and geography on gene flow in guppies. Mol Ecol 15: 49-62.
11. Daniel FB, Griffith MB, Troyer ME (2010) Influences of spatial scale and soil permeability on relationships between land cover and baseflow stream nutrient concentrations. Environ Manag 45: 336-350.
12. Derry AM, Arnott SE, Shead JA, Hebert PDN, Boag PT (2009) Ecological linkages between community and genetic diversity in zooplankton among boreal shield lakes. Ecology 90: 2275-2286.
13. Dieringer D, Schlötterer C (2002) Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes 3: 167-169.
14. Dimsoski P, Toth GP, Bagley MJ (2000) Microsatellite characterization in central stoneroller Campostoma anomalum (Pisces: Cyprinidae). Mol Ecol 9: 2187-2189.
15. Etienne RS, Olff H (2004) A novel genealogical approach to neutral biodiversity theory. Ecol Lett 7: 170-175.
16. Evanno G, Castella E, Antoine C, Paillat G, Goudet J (2009) Parallel changes in genetic diversity and species diversity following a natural disturbance. Mol Ecol 18: 1137-1144.
17. Fagan WF (2002) Connectivity, fragmentation and extinction risk in dendritic metapopulations. Ecology 83: 3243-3249.
18. Frankham R (1996) Relationship of genetic variation to population size in wildlife. Conserv Biol 10: 1500-1508.
19. Foré SA, Guttman SI, Bailer AJ, Altfeter DJ, Counts BV (1995) Potential use of genetic diversity as an indicator of water quality. II. Campostoma anomalum. Ecotoxicol Environ Saf 30: 36-46.
20. Gorman OT, Karr JR (1978) Habitat structure and stream fish communities. Ecology 59: 507-515.
21. Griffith MB, Daniel FB, Morrison MA, Troyer ME, Lazorchak JM, Schubauer-Berigan JP (2009) Linking excess nutrients, light, and fine bedded sediments to impacts on faunal assemblages in headwater agricultural streams. J Am Water Resour Assoc 45: 1475-1492.
22. Guegan JF, Lek S, Oberdorff T (1998) Energy availability and habitat heterogeneity predict global riverine fish diversity. Nature 391: 382-384.
23. Gugerli F, Englisch T, Niklfeld H, Tribsch A, Mirek Z, Ronikier M, Zimmermann NE, Holderegger R, Taberlet P, IntraBioDiv Consortium (2008) Relationships among levels of biodiversity and the relevance of intraspecific diversity in conservation-a project synopsis. Perspect Plant Ecol Evol Syst 10: 259-281.
24. Hadfield JD (2010) MCMC methods for multi-response generalized linear mixed models: the MCMCglmm R package. J Stat Softw 33: 1-22.
25. Hadfield JD, Nutall A, Osorio D, Owens IPF (2007) Testing the phenotypic gambit: phenotypic, genetic and environmental correlations of colour. J Evol Biol 20: 549-557.
26. Hänfling B, Weetman D (2006) Concordant genetic estimators of migration reveal anthropogenetically enhanced source-sink population structure in the river sculpin, Cottus gobio. Genetics 173: 1487-1501.
27. Harding JS, Benfield EF, Bolstad PV, Helfman GS, Jones EBD (1998) Stream biodiversity: the ghost of land use past. Proc Natl Acad Sci USA 95: 14843-14847.
28. He T, Lamont BB, Krauss SL, Enright NJ, Miller BP (2008) Covariation between intraspecific genetic diversity and species diversity within a plant functional group. J Ecol 96: 956-961.
29. Hubbell SP (2001) The unified neutral theory of biogeography and biodiversity. Princeton University Press, Princeton.
30. Hughes RM, Noss RF (1992) Biological diversity and biological integrity: current concerns for lakes and streams. Fisheries 17: 11-19.
31. Karr JK (1981) Assessment of biotic integrity using fish communities. Fisheries 6: 21-27.
32. Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, New York.
33. Kruse CG, Hubert WA, Rahel FJ (1998) Single-pass electrofishing predicts trout abundance in mountain streams with sparse habitat. North Am J Fish Manag 18: 940-946.
34. Kruuk LEB, Hadfield JD (2007) How to separate genetic and environmental causes of similarity between relatives. J Evol Biol 20: 1890-1903.
35. Jones ML, Stockwell JD (1995) A rapid assessment procedure for the enumeration of salmonine populations in streams. North Am J Fish Manag 15: 551-562.
36. Lankau RA, Strauss SY (2007) Mutual feedbacks maintain both genetic and species diversity in a plant community. Science 317: 1561-1563.
37. Lazorchak JM, Klemm DJ, Peck DV (1998) Environmental monitoring and assessment program- surface waters: field operations and methods for measuring the ecological condition of wadeable streams. EPA/620/R-94/004F. US Environmental Protection Agency, Washington, DC.
38. Levins R (1968) Evolution in changing environments. Princeton University Press, Princeton.
39. Livingstone DA, Rowland M, Bailey PE (1982) On the size of African riverine fish faunas. Am Zool 22: 361-369.
40. MacArthur RH, Wilson EO (1967) The theory of island biogeography. Princeton University Press, Princeton.
41. Maret TR, MacCoy DE (2002) Fish assemblages and environmental variables associated with hard-rock mining in the Coeur d'Alene River Basin, Idaho. Trans Am Fish Soc 131: 865-884.
42. Mayden RL (1987) Pleistocene glaciation and historical biogeography of North American highland fishes. Kansas Geological Survey, Lawrence, Kansas Guidebook 5: 41-152.
43. Mundahl ND, Ingersol CG (1989) Home range, movements and density of the central stoneroller, Campostoma anomalum, in a small Ohio stream. Environ Biol Fish 24: 307-311.
44. Murphy BR, Willis DW (1996) Fisheries Techniques, 2nd edn. American Fisheries Society, Bethesda.
45. Neuhauser C, Andow DA, Heimpel GE, May G, Shaw RG, Wagenius S (2003) Community genetics: expanding the synthesis of ecology and genetics. Ecology 84: 545-558.
46. Noss RF (1990) Indicators for monitoring biodiversity: a hierarchical approach. Conserv Biol 4: 355-364.
47. Odat N, Jetschke G, Hellwig FH (2004) Genetic diversity of Ranunculus acris L. (Ranunculaceae) populations in relation to species diversity and habitat type in grassland communities. Mol Ecol 13: 1251-1257.
48. Odat N, Hellwig FH, Jetschke G, Fischer M (2010) On the relationship between plant species diversity and genetic diversity of Plantago lanceolata (Plantaginaceae) within and between grassland communities. J Plant Ecol 3: 41-48.
49. Osborne LL, Kohler SL, Bayley PB, Day DM, Bertrand WA, Wiley MJ, Sauer R (1992) Influence of stream location in a drainage network on the index of biotic integrity. Trans Am Fish Soc 121: 635-643.
50. Patton PC, Baker VR (1976) Morphometry and floods in small drainage basins subject to diverse hydrogeomorphic controls. Water Resour Res 12: 941-952.
51. Poff NL (1997) Landscape filters and species traits: towards mechanistic understanding and prediction in stream ecology. J North Am Benthol Soc 16: 391-409.
52. Power ME, Matthews WJ, Stewart AJ (1985) Grazing minnows, piscivorous bass, and stream algae: dynamics of a strong interaction. Ecology 66: 1448-1456.
53. Puşcaş M, Taberlet P, Choler P (2008) No positive correlation between species and genetic diversity in European alpine grasslands dominated by Carex curvula. Divers Distrib 14: 852-861.
54. Raymond M, Rousset F (1995) GENEPOP (version 1. 2): population genetics software for exact tests and ecumenicism. J Hered 86: 248-249.
55. Robinson JD, Diaz-Ferguson E, Poelchau MF, Pennings S, Bishop TD, Wares JP (2010) Multiscale diversity in the marshes of the Georgia Coastal Ecosystems LTER. Estuaries Coasts 33: 865-877.
56. Schneider S, Roessli D, Excoffier L (2000) Arlequin ver. 2. 001: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
57. Seehausen O, van Alphen JM, Witte F (1997) Cichlid fish diversity threatened by eutrophication that curbs sexual selection. Science 277: 1808-1811.
58. Seehausen O, Takimoto G, Roy D, Jokela J (2008) Speciation reversal and biodiversity dynamics with hybridization in changing environments. Mol Ecol 17: 30-44.
59. Sei M, Lang BK, Berg DL (2009) Genetic and community similarities are correlated in endemic-rich springs of the northern Chihuahuan Desert. Global Ecol Biogeogr 18: 192-201.
60. Sherwin WB, Jabot F, Rush R, Rossetto M (2006) Measurement of biological information with applications from genes to landscapes. Mol Ecol 15: 2857-2869.
61. Silvertown J, Biss PM, Freeland J (2009) Community genetics: resource addition has opposing effects on genetic and species diversity in a 150-year experiment. Ecol Lett 12: 165-170.
62. Snyder DE (2003) Electrofishing and its harmful effects on fish, Information and Technology. Report USGS/BRD/ITR-2003-0002: US. Government Printing Office, Denver.
63. Struebig M, Kingston T, Petit EJ, Zubaid A, Mohd-Adnan A, Rossiteri SJ (2011) Parallel declines in species and genetic diversity in tropical forest fragments. Ecol Lett 14: 582-590.
64. Sutherland AB, Meyer JL, Gardiner EP (2002) Effects of land cover on sediment regime and fish assemblage structure in four southern Appalachian streams. Freshw Biol 47: 1791-1805.
65. Sutherland WJ (2006) Ecological census techniques: a handbook. Cambridge University Press, Cambridge.
66. Tilman D (1982) Resource competition and community structure. Princeton University Press, Princeton.
67. US Environmental Protection Agency (1979) Methods for chemical analysis of water and wastes. EPA/600/4-79-020. US Environmental Protection Agency, Washington, DC.
68. US Geological Survey (1998) Occurrence and distribution of fish species in the Great and Little Miami River Basins, Ohio and Indiana, pre-1900 to 1998. Water Resource Investigations Report 99-4198. US Department of the Interior, US Geological Survey, Columbus.
69. van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538.
70. Vellend M (2003) Island biogeography of genes and species. Am Nat 162: 358-365.
71. Vellend M (2004) Parallel effects of land-use history on species diversity and genetic diversity of forest herbs. Ecology 85: 3043-3055.
72. Vellend M (2005) Species diversity and genetic diversity: parallel processes and correlated patterns. Am Nat 166: 199-215.
73. Vellend M, Geber MA (2005) Connections between species diversity and genetic diversity. Ecol Lett 8: 767-781.
74. Waits ER, Bagley MJ, Blum MJ, McCormick FH, Lazorchak JM (2008) Source-sink dynamics sustain central stonerollers (Campostoma anomalum) in a heavily urbanized catchment. Freshw Biol 53: 2061-2075.
75. Walters DM, Leigh DS, Bearden AB (2003) Urbanization, sedimentation, and the homogenization of fish assemblages in the Etowah River Basin, USA. Hydrobiologia 494: 5-10.
76. Wehenkel C, Bergmann F, Hans-Rolf G (2006) Is there a trade-off between species diversity and genetic diversity in forest tree communities? Plant Ecol 185: 151-161.
77. Willis KJ, Birks HJB (2006) What is natural? The need for a long-term perspective in biodiversity conservation. Science 314: 1261-1265.
78. Wright S (1940) Breeding structure of populations in relation to speciation. Am Nat 74: 232-248.