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Volumn 63, Issue 1, 2012, Pages 1-11

Magnetotactic Bacteria in Microcosms Originating from the French Mediterranean Coast Subjected to Oil Industry Activities

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FERUMOXYTOL; GREIGITE; IRON; OIL; RNA 16S; SULFIDE; SULFUR DERIVATIVE;

EID: 84855574497     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9910-z     Document Type: Article
Times cited : (31)

References (47)
  • 2
    • 0036233740 scopus 로고    scopus 로고
    • Cadmium recovery by a sulphate-reducing magnetotactic bacterium, Desulfovibrio magneticus RS-1, using magnetic separation
    • Arakaki A, Takeyama H, Tanaka T et al (2002) Cadmium recovery by a sulphate-reducing magnetotactic bacterium, Desulfovibrio magneticus RS-1, using magnetic separation. Appl Biochem Biotech 98(100): 833-840.
    • (2002) Appl Biochem Biotech , vol.98 , Issue.100 , pp. 833-840
    • Arakaki, A.1    Takeyama, H.2    Tanaka, T.3
  • 3
    • 61349196811 scopus 로고    scopus 로고
    • Occurrence and distribution of hydrocarbons in surface sediments from Marseille Bay (France) Marine
    • Asia L, Mazouz S, Guiliano M, Doumenq P, Mille G (2009) Occurrence and distribution of hydrocarbons in surface sediments from Marseille Bay (France) Marine. Pollution Bulletin 58: 443-451.
    • (2009) Pollution Bulletin , vol.58 , pp. 443-451
    • Asia, L.1    Mazouz, S.2    Guiliano, M.3    Doumenq, P.4    Mille, G.5
  • 4
    • 0033827734 scopus 로고    scopus 로고
    • Occurrence and distribution of diverse populations of magnetic protists in a chemically stratified coastal salt pond
    • Bazylinski DA, Schlezinger DR, Howes BH, Frankel RB, Epstein SS (2000) Occurrence and distribution of diverse populations of magnetic protists in a chemically stratified coastal salt pond. Chem Geol 169: 319-328.
    • (2000) Chem Geol , vol.169 , pp. 319-328
    • Bazylinski, D.A.1    Schlezinger, D.R.2    Howes, B.H.3    Frankel, R.B.4    Epstein, S.S.5
  • 5
    • 84944816274 scopus 로고
    • Spectrophotometric determination of hydrogen sulfide in natural waters
    • Cline JD (1969) Spectrophotometric determination of hydrogen sulfide in natural waters. Limnol Oceanogr 14: 454-458.
    • (1969) Limnol Oceanogr , vol.14 , pp. 454-458
    • Cline, J.D.1
  • 6
    • 0842345384 scopus 로고    scopus 로고
    • Desulfatibacillum aliphaticivorans gen. nov., sp. nov., an n-alkane- and n-alkene-degrading, sulfate-reducing bacterium
    • Cravo-Laureau C, Matheron R, Cayol JL, Joulian C, Hirschler-Réa A (2004) Desulfatibacillum aliphaticivorans gen. nov., sp. nov., an n-alkane- and n-alkene-degrading, sulfate-reducing bacterium. Int J Syst Evol Microbiol 54: 77-83.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 77-83
    • Cravo-Laureau, C.1    Matheron, R.2    Cayol, J.L.3    Joulian, C.4    Hirschler-Réa, A.5
  • 7
    • 5444219971 scopus 로고    scopus 로고
    • Desulfatibacillum alkenivorans sp. nov., a novel n-alkene-degrading, sulfate-reducing bacterium, and emended description of the genus Desulfatibacillum
    • Cravo-Laureau C, Matheron R, Joulian C, Cayol JL, Hirschler-Réa A (2004) Desulfatibacillum alkenivorans sp. nov., a novel n-alkene-degrading, sulfate-reducing bacterium, and emended description of the genus Desulfatibacillum. Int J Syst Evol Microbiol 54: 1639-1642.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1639-1642
    • Cravo-Laureau, C.1    Matheron, R.2    Joulian, C.3    Cayol, J.L.4    Hirschler-Réa, A.5
  • 8
    • 14544272337 scopus 로고    scopus 로고
    • Novel genes of the dsr gene cluster and evidence for close interaction of Dsr proteins during sulfur oxidation in the phototrophic sulfur bacterium Allochromatium vinosum
    • Dahl C, Engels S, Pott-Sperling AS, Schulte A, Sander J, Lübbe Y, Deuster O, Brune DC (2005) Novel genes of the dsr gene cluster and evidence for close interaction of Dsr proteins during sulfur oxidation in the phototrophic sulfur bacterium Allochromatium vinosum. J Bacteriol 187: 1392-1404.
    • (2005) J Bacteriol , vol.187 , pp. 1392-1404
    • Dahl, C.1    Engels, S.2    Pott-Sperling, A.S.3    Schulte, A.4    Sander, J.5    Lübbe, Y.6    Deuster, O.7    Brune, D.C.8
  • 9
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar C (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 32: 1792-1797.
    • (2004) Nucl Acids Res , vol.32 , pp. 1792-1797
    • Edgar, C.1
  • 10
    • 57349106491 scopus 로고    scopus 로고
    • Magnetotactic bacteria and magnetosomes
    • Faivre D, Schüler D (2008) Magnetotactic bacteria and magnetosomes. Chem Rev 108: 4875-4898.
    • (2008) Chem Rev , vol.108 , pp. 4875-4898
    • Faivre, D.1    Schüler, D.2
  • 11
    • 15244339397 scopus 로고    scopus 로고
    • Diversity and vertical distribution of magnetotactic bacteria along chemical gradients in freshwater microcosms
    • Flies CB, Jonkers HM, De Beer D, Bosselmann K, Böttcher ME, Schüler D (2005) Diversity and vertical distribution of magnetotactic bacteria along chemical gradients in freshwater microcosms. FEMS Microbiol Ecol 52: 185-195.
    • (2005) FEMS Microbiol Ecol , vol.52 , pp. 185-195
    • Flies, C.B.1    Jonkers, H.M.2    de Beer, D.3    Bosselmann, K.4    Böttcher, M.E.5    Schüler, D.6
  • 12
    • 18444379962 scopus 로고    scopus 로고
    • Combined approach for characterization of uncultivated magnetotactic bacteria from various aquatic environments
    • Flies CB, Peplies J, Schüler D (2005) Combined approach for characterization of uncultivated magnetotactic bacteria from various aquatic environments. Appl Environ Microbiol 71: 2723-2731.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2723-2731
    • Flies, C.B.1    Peplies, J.2    Schüler, D.3
  • 14
    • 33646193540 scopus 로고    scopus 로고
    • Class I Alphaproteobacteria class nov
    • 2nd Edn G. M. Garrity, D. J. J. Brenner, N. R. Krieg, and J. T. Staley (Eds.), New York: Springer
    • Garrity GM, Bell JA, Lilburn T (2005) Class I Alphaproteobacteria class nov. In: Garrity GM, Brenner DJJ, Krieg NR, Staley JT (eds) Bergey's manual of systematic bacteriology, 2nd edn, vol. 2, part C. Springer, New York, p 1.
    • (2005) Bergey's Manual of Systematic Bacteriology , vol.2 , Issue.PART C , pp. 1
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 15
    • 77954636619 scopus 로고    scopus 로고
    • Reduced inorganic sulfur oxidation supports autotrophic and mixotrophic growth of Magnetospirillum strain J10 and Magnetospirillum gryphiswaldense
    • Geelhoed JS, Kleerebezem R, Sorokin DY et al (2010) Reduced inorganic sulfur oxidation supports autotrophic and mixotrophic growth of Magnetospirillum strain J10 and Magnetospirillum gryphiswaldense. Environ Microbiol 12: 1031-1040.
    • (2010) Environ Microbiol , vol.12 , pp. 1031-1040
    • Geelhoed, J.S.1    Kleerebezem, R.2    Sorokin, D.Y.3
  • 16
    • 52649153582 scopus 로고    scopus 로고
    • X-ray absorption spectroscopy as a probe of microbial sulfur biochemistry: the nature of bacterial sulfur globules revisited
    • George GN, Gnida M, Bazylinski DA et al (2008) X-ray absorption spectroscopy as a probe of microbial sulfur biochemistry: the nature of bacterial sulfur globules revisited. J Bacteriol 190: 6376-6383.
    • (2008) J Bacteriol , vol.190 , pp. 6376-6383
    • George, G.N.1    Gnida, M.2    Bazylinski, D.A.3
  • 17
    • 2442680697 scopus 로고    scopus 로고
    • Novel forms of structural integration between microbes and a hydrothermal vent gasteropod from the Indian Ocean
    • Goffredi SK, Waren A, Orphan VJ et al (2004) Novel forms of structural integration between microbes and a hydrothermal vent gasteropod from the Indian Ocean. Appl Environ Microbiol 70: 3082-3090.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3082-3090
    • Goffredi, S.K.1    Waren, A.2    Orphan, V.J.3
  • 18
    • 70349653431 scopus 로고    scopus 로고
    • Biochemistry and molecular biology of lithotrophic sulphur oxidation by taxonomically and ecologically diverse bacteria and archaea
    • Ghosh W, Dam B (2009) Biochemistry and molecular biology of lithotrophic sulphur oxidation by taxonomically and ecologically diverse bacteria and archaea. FEMS Microbiol Rev 33: 999-1043.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 999-1043
    • Ghosh, W.1    Dam, B.2
  • 19
    • 0026578368 scopus 로고
    • Redox cycling of iron supports growth and magnetite synthesis by Aquaspirillum magnetotacticum
    • Guerin WF, Blakemore RP (1992) Redox cycling of iron supports growth and magnetite synthesis by Aquaspirillum magnetotacticum. Appl Environ Microbiol 58: 1102-1109.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 1102-1109
    • Guerin, W.F.1    Blakemore, R.P.2
  • 20
    • 0038236515 scopus 로고    scopus 로고
    • Growth and magnetosome formation by microaerophilic Magnetospirillum strains in an oxygen-controlled fermentor
    • Heyen U, Schüler D (2003) Growth and magnetosome formation by microaerophilic Magnetospirillum strains in an oxygen-controlled fermentor. Appl Microbiol Biotechnol 61: 536-544.
    • (2003) Appl Microbiol Biotechnol , vol.61 , pp. 536-544
    • Heyen, U.1    Schüler, D.2
  • 21
    • 77956285226 scopus 로고    scopus 로고
    • Cultivation-independent characterization of 'Candidatus Magnetobacterium bavaricum' via ultrastructural, geochemical, ecological and metagenomic methods
    • Jogler C, Niebler M, Lin W et al (2010) Cultivation-independent characterization of 'Candidatus Magnetobacterium bavaricum' via ultrastructural, geochemical, ecological and metagenomic methods. Environ Microbiol 12: 2466-2478.
    • (2010) Environ Microbiol , vol.12 , pp. 2466-2478
    • Jogler, C.1    Niebler, M.2    Lin, W.3
  • 22
    • 0037374866 scopus 로고    scopus 로고
    • Combination of magnetic parameters: an efficient way to discriminate soil-contamination sources (south France)
    • Lecoanet H, Léveque F, Ambrosi JP (2003) Combination of magnetic parameters: an efficient way to discriminate soil-contamination sources (south France). Environ Pollut 122: 229-234.
    • (2003) Environ Pollut , vol.122 , pp. 229-234
    • Lecoanet, H.1    Léveque, F.2    Ambrosi, J.P.3
  • 23
    • 67149095570 scopus 로고    scopus 로고
    • Isolation and characterization of a magnetotactic bacterium from the Mediterranean Sea
    • Lefèvre C, Bernadac A, Yu-Zhang K et al (2009) Isolation and characterization of a magnetotactic bacterium from the Mediterranean Sea. Environ Microbiol 11: 1646-1657.
    • (2009) Environ Microbiol , vol.11 , pp. 1646-1657
    • Lefèvre, C.1    Bernadac, A.2    Yu-Zhang, K.3
  • 24
    • 67149088377 scopus 로고    scopus 로고
    • Uncultivated magnetotactic cocci from Yuandadu park in Beijing, China
    • Lin W, Pan Y (2009) Uncultivated magnetotactic cocci from Yuandadu park in Beijing, China. Appl Environ Microbiol 75: 4046-4052.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 4046-4052
    • Lin, W.1    Pan, Y.2
  • 25
    • 70949098957 scopus 로고    scopus 로고
    • Temporal variation of magnetotactic bacterial communities in two freshwater sediment microcosms
    • Lin W, Pan Y (2010) Temporal variation of magnetotactic bacterial communities in two freshwater sediment microcosms. FEMS Microbiol Lett 302: 85-92.
    • (2010) FEMS Microbiol Lett , vol.302 , pp. 85-92
    • Lin, W.1    Pan, Y.2
  • 26
    • 23744461063 scopus 로고    scopus 로고
    • Habits of magnetosome crystals in coccoid magnetotactic bacteria
    • Lins U, McCartney MR, Farina M et al (2005) Habits of magnetosome crystals in coccoid magnetotactic bacteria. Appl Environ Microbiol 71: 4902-4905.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4902-4905
    • Lins, U.1    McCartney, M.R.2    Farina, M.3
  • 27
    • 34248189785 scopus 로고    scopus 로고
    • Hydrocarbons in coastal sediments from the Mediterranean Sea (Gulf of Fos area, France)
    • Mille G, Asia L, Guiliano M et al (2007) Hydrocarbons in coastal sediments from the Mediterranean Sea (Gulf of Fos area, France). Mar Pollut Bull 54: 566-575.
    • (2007) Mar Pollut Bull , vol.54 , pp. 566-575
    • Mille, G.1    Asia, L.2    Guiliano, M.3
  • 28
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 29
    • 41849121867 scopus 로고    scopus 로고
    • Characterization of a homogeneous taxonomic group of marine magnetotactic cocci within a low tide zone in the China Sea
    • Pan H, Zhu K, Song T, Yu-Zhang K, Lefèvre C, Xing S, Liu M, Zhao S, Xiao T, Wu LF (2008) Characterization of a homogeneous taxonomic group of marine magnetotactic cocci within a low tide zone in the China Sea. Environ Microbiol 10: 1158-1164.
    • (2008) Environ Microbiol , vol.10 , pp. 1158-1164
    • Pan, H.1    Zhu, K.2    Song, T.3    Yu-Zhang, K.4    Lefèvre, C.5    Xing, S.6    Liu, M.7    Zhao, S.8    Xiao, T.9    Wu, L.F.10
  • 30
    • 0031855745 scopus 로고    scopus 로고
    • Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur
    • Pott AS, Dahl C (1998) Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur. Microbiology 144: 1881-1894.
    • (1998) Microbiology , vol.144 , pp. 1881-1894
    • Pott, A.S.1    Dahl, C.2
  • 31
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 32
    • 0027338811 scopus 로고
    • Magnetite formation by a sulfate-reducing bacterium
    • Sakaguchi T, Burgess JG, Matsunaga T (1993) Magnetite formation by a sulfate-reducing bacterium. Nature 365: 47-49.
    • (1993) Nature , vol.365 , pp. 47-49
    • Sakaguchi, T.1    Burgess, J.G.2    Matsunaga, T.3
  • 33
    • 0030200667 scopus 로고    scopus 로고
    • A novel method for isolation of magnetic bacteria without magnetic collection using magnetotaxis
    • Sakaguchi T, Tsujimura N, Matsunaga T (1996) A novel method for isolation of magnetic bacteria without magnetic collection using magnetotaxis. J Microbiol Met 26: 139-145.
    • (1996) J. Microbiol. Met. , vol.26 , pp. 139-145
    • Sakaguchi, T.1    Tsujimura, N.2    Matsunaga, T.3
  • 34
    • 0034115479 scopus 로고    scopus 로고
    • Isolation and characterization of a new denitrifying spirillum capable of anaerobic degradation of phenol
    • Shinoda Y, Sakai Y, Ué M, Hiraishi A, Kato N (2000) Isolation and characterization of a new denitrifying spirillum capable of anaerobic degradation of phenol. Appl Environ Microbiol 66: 1286-1291.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1286-1291
    • Shinoda, Y.1    Sakai, Y.2    Ué, M.3    Hiraishi, A.4    Kato, N.5
  • 35
    • 8144223173 scopus 로고    scopus 로고
    • Spatiotemporal distribution of marine magnetotactic bacteria in a seasonally stratified coastal salt pond
    • Simmons SL, Sievert SM, Frankel RB, Bazylinski DA, Edwards KJ (2004) Spatiotemporal distribution of marine magnetotactic bacteria in a seasonally stratified coastal salt pond. Appl Environ Microbiol 70: 6230-6239.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6230-6239
    • Simmons, S.L.1    Sievert, S.M.2    Frankel, R.B.3    Bazylinski, D.A.4    Edwards, K.J.5
  • 36
    • 33846033127 scopus 로고    scopus 로고
    • Unexpected diversity in populations of the many-celled magnetotactic prokaryote
    • Simmons SL, Edwards KJ (2006) Unexpected diversity in populations of the many-celled magnetotactic prokaryote. Environ Microbiol 9: 206-215.
    • (2006) Environ Microbiol , vol.9 , pp. 206-215
    • Simmons, S.L.1    Edwards, K.J.2
  • 37
    • 34547684292 scopus 로고    scopus 로고
    • Population dynamics of marine magnetotactic bacteria in a meromictic salt pond described with qPCR
    • Simmons SL, Bazylinski DA, Edwards KJ (2007) Population dynamics of marine magnetotactic bacteria in a meromictic salt pond described with qPCR. Environ Microbiol 9: 2162-2174.
    • (2007) Environ Microbiol , vol.9 , pp. 2162-2174
    • Simmons, S.L.1    Bazylinski, D.A.2    Edwards, K.J.3
  • 38
    • 0026520954 scopus 로고
    • Phylogenetic diversity and identification of nonculturable magnetotactic bacteria
    • Spring S, Amann R, Ludwig W, Schleifer KH, Petersen N (1992) Phylogenetic diversity and identification of nonculturable magnetotactic bacteria. Syst Appl Microbiol 15: 116-122.
    • (1992) Syst Appl Microbiol , vol.15 , pp. 116-122
    • Spring, S.1    Amann, R.2    Ludwig, W.3    Schleifer, K.H.4    Petersen, N.5
  • 39
    • 0031887619 scopus 로고    scopus 로고
    • Phylogenetic affiliation and ultrastructure of uncultured magnetic bacteria with unusually large magnetosomes
    • Spring S, Lins U, Amann R, Schleifer KH, Ferreira LC, Esquivel DM, Farina M (1998) Phylogenetic affiliation and ultrastructure of uncultured magnetic bacteria with unusually large magnetosomes. Arch Microbiol 169: 136-147.
    • (1998) Arch Microbiol , vol.169 , pp. 136-147
    • Spring, S.1    Lins, U.2    Amann, R.3    Schleifer, K.H.4    Ferreira, L.C.5    Esquivel, D.M.6    Farina, M.7
  • 40
    • 77955962494 scopus 로고    scopus 로고
    • Simultaneously discrete biomineralization of magnetite and tellurium nanocrystals in magnetotactic bacteria
    • Tanaka M, Arakaki A, Staniland SS, Matsunaga T (2010) Simultaneously discrete biomineralization of magnetite and tellurium nanocrystals in magnetotactic bacteria. Appl Environ Microbiol 76: 5526-5532.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 5526-5532
    • Tanaka, M.1    Arakaki, A.2    Staniland, S.S.3    Matsunaga, T.4
  • 41
    • 0028509254 scopus 로고
    • TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • van de Peer Y, De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10: 569-570.
    • (1994) Comput Appl Biosci , vol.10 , pp. 569-570
    • van de Peer, Y.1    de Wachter, R.2
  • 43
    • 66649095354 scopus 로고    scopus 로고
    • Ultrastructure, tactic behaviour and potential for sulphate reduction of a novel multicellular magnetotactic prokaryote from North Sea sediments
    • Wenter R, Wanner G, Schüler D, Overmann J (2009) Ultrastructure, tactic behaviour and potential for sulphate reduction of a novel multicellular magnetotactic prokaryote from North Sea sediments. Environ Microbiol 11: 1493-1505.
    • (2009) Environ Microbiol , vol.11 , pp. 1493-1505
    • Wenter, R.1    Wanner, G.2    Schüler, D.3    Overmann, J.4
  • 44
    • 33144458254 scopus 로고    scopus 로고
    • Evidence for autotrophy via the reverse tricarboxylic acid cycle in the marine magnetotactic coccus strain MC-1
    • Williams TJ, Zhang CL, Scott JH, Bazylinski DA (2006) Evidence for autotrophy via the reverse tricarboxylic acid cycle in the marine magnetotactic coccus strain MC-1. Appl Environ Microbiol 72: 1322-1329.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1322-1329
    • Williams, T.J.1    Zhang, C.L.2    Scott, J.H.3    Bazylinski, D.A.4
  • 45
    • 0023103376 scopus 로고
    • A "capillary racetrack" method for isolation of magnetotactic bacteria
    • Wolfe RS, Thauer RK, Pfennig N (1987) A "capillary racetrack" method for isolation of magnetotactic bacteria. FEMS Microbial Lett 45: 31-35.
    • (1987) FEMS Microbial Lett , vol.45 , pp. 31-35
    • Wolfe, R.S.1    Thauer, R.K.2    Pfennig, N.3


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