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Volumn 302, Issue 1, 2010, Pages 85-92

Temporal variation of magnetotactic bacterial communities in two freshwater sediment microcosms

Author keywords

16S rRNA gene; Magnetotactic bacteria; Physical chemical parameters; Statistical analysis; Unifrac

Indexed keywords

FRESH WATER; MAGNETITE; NITRATE; RNA 16S;

EID: 70949098957     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2009.01838.x     Document Type: Article
Times cited : (34)

References (43)
  • 1
    • 34347393980 scopus 로고    scopus 로고
    • Diversity and taxonomy of magnetotactic bacteria
    • Schüler, D. ed. pp. Springer-Verlag. Berlin.
    • Amann R, Peplies J Schüler D (2006) Diversity and taxonomy of magnetotactic bacteria. Magnetoreception and Magnetosomes in Bacteria (Schüler D, ed. pp. 25 36. Springer-Verlag, Berlin.
    • (2006) Magnetoreception and Magnetosomes in Bacteria , pp. 25-36
    • Amann, R.1    Peplies, J.2    Schüler, D.3
  • 5
    • 21744432083 scopus 로고    scopus 로고
    • A mesocosm study of Phaeocystis globosa (Prymnesiophyceae) population dynamics - II. Significance for the microbial community
    • Brussaard CPD, Mari X, Van Bleijswijk JDL Veldhuis MJW (2005) A mesocosm study of Phaeocystis globosa (Prymnesiophyceae) population dynamics - II. Significance for the microbial community. Harmful Algae 4 : 875 893.
    • (2005) Harmful Algae , vol.4 , pp. 875-893
    • Brussaard, C.P.D.1    Mari, X.2    Van Bleijswijk, J.D.L.3    Veldhuis, M.J.W.4
  • 6
    • 0024875871 scopus 로고
    • Magnetofossils, the magnetization of sediments, and the evolution of magnetite biomineralization
    • Chang SBR Kirschvink JL (1989) Magnetofossils, the magnetization of sediments, and the evolution of magnetite biomineralization. Annu Rev Earth Pl Sc 17 : 169 195.
    • (1989) Annu Rev Earth Pl Sc , vol.17 , pp. 169-195
    • Chang, S.B.R.1    Kirschvink, J.L.2
  • 7
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
    • Cole JR, Wang Q, Cardenas E et al 2009) The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37 : D141 D145.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Al, E.4
  • 8
    • 0037154213 scopus 로고    scopus 로고
    • Chemical warfare between microbes promotes biodiversity
    • Czárán TL, Hoekstra RF Pagie L (2002) Chemical warfare between microbes promotes biodiversity. P Natl Acad Sci USA 99 : 786 790.
    • (2002) P Natl Acad Sci USA , vol.99 , pp. 786-790
    • Czárán, T.L.1    Hoekstra, R.F.2    Pagie, L.3
  • 9
    • 0035512205 scopus 로고    scopus 로고
    • In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants
    • Daims H, Nielsen JL, Nielsen PH, Schleifer KH Wagner M (2001) In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants. Appl Environ Microb 67 : 5273 5284.
    • (2001) Appl Environ Microb , vol.67 , pp. 5273-5284
    • Daims, H.1    Nielsen, J.L.2    Nielsen, P.H.3    Schleifer, K.H.4    Wagner, M.5
  • 10
    • 57349106491 scopus 로고    scopus 로고
    • Magnetotactic bacteria and magnetosomes
    • Faivre D Schüler D (2008) Magnetotactic bacteria and magnetosomes. Chem Rev 108 : 4875 4898.
    • (2008) Chem Rev , vol.108 , pp. 4875-4898
    • Faivre, D.1    Schüler, D.2
  • 11
    • 15244339397 scopus 로고    scopus 로고
    • Diversity and vertical distribution of magnetotactic bacteria along chemical gradients in freshwater microcosms
    • Flies CB, Jonkers HM, de Beer D, Bosselmann K, Bottcher ME Schüler D (2005a) Diversity and vertical distribution of magnetotactic bacteria along chemical gradients in freshwater microcosms. FEMS Microbiol Ecol 52 : 185 195.
    • (2005) FEMS Microbiol Ecol , vol.52 , pp. 185-195
    • Flies, C.B.1    Jonkers, H.M.2    De Beer, D.3    Bosselmann, K.4    Bottcher, M.E.5    Schüler, D.6
  • 12
    • 18444379962 scopus 로고    scopus 로고
    • Combined approach for characterization of uncultivated magnetotactic bacteria from various aquatic environments
    • Flies CB, Peplies J Schüler D (2005b) Combined approach for characterization of uncultivated magnetotactic bacteria from various aquatic environments. Appl Environ Microb 71 : 2723 2731.
    • (2005) Appl Environ Microb , vol.71 , pp. 2723-2731
    • Flies, C.B.1    Peplies, J.2    Schüler, D.3
  • 14
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • Huber T, Faulkner G Hugenholtz P (2004) Bellerophon: A program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20 : 2317 2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 15
    • 0034622810 scopus 로고    scopus 로고
    • Composition of the bacterial community degrading Phaeocystis mucopolysaccharides in enrichment cultures
    • Janse I, Zwart G, van der Maarel M Gottschal JC (2000) Composition of the bacterial community degrading Phaeocystis mucopolysaccharides in enrichment cultures. Aquat Microb Ecol 22 : 119 133.
    • (2000) Aquat Microb Ecol , vol.22 , pp. 119-133
    • Janse, I.1    Zwart, G.2    Van Der Maarel, M.3    Gottschal, J.C.4
  • 16
    • 67149146239 scopus 로고    scopus 로고
    • Towards cloning the magnetotactic metagenome: Identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments
    • Jogler C, Lin W, Meyerdierks A, Kube M, Katzmann E, Flies C, Pan Y, Amann R, Reinhardt R Schüler D (2009) Towards cloning the magnetotactic metagenome: Identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments. Appl Environ Microb 75 : 3972 3979.
    • (2009) Appl Environ Microb , vol.75 , pp. 3972-3979
    • Jogler, C.1    Lin, W.2    Meyerdierks, A.3    Kube, M.4    Katzmann, E.5    Flies, C.6    Pan, Y.7    Amann, R.8    Reinhardt, R.9    Schüler, D.10
  • 17
    • 1842525243 scopus 로고    scopus 로고
    • Antibiotic-mediated antagonism leads to a bacterial game of rock-paper-scissors in vivo
    • Kirkup BC Riley MA (2004) Antibiotic-mediated antagonism leads to a bacterial game of rock-paper-scissors in vivo. Nature 428 : 412 414.
    • (2004) Nature , vol.428 , pp. 412-414
    • Kirkup, B.C.1    Riley, M.A.2
  • 18
    • 36849026754 scopus 로고    scopus 로고
    • The identification and biogeochemical interpretation of fossil magnetotactic bacteria
    • Kopp RE Kirschvink JL (2008) The identification and biogeochemical interpretation of fossil magnetotactic bacteria. Earth-Sci Rev 86 : 42 61.
    • (2008) Earth-Sci Rev , vol.86 , pp. 42-61
    • Kopp, R.E.1    Kirschvink, J.L.2
  • 19
    • 67149088377 scopus 로고    scopus 로고
    • Uncultivated magnetotactic cocci from Yuandadu park in Beijing, China
    • Lin W Pan Y (2009) Uncultivated magnetotactic cocci from Yuandadu park in Beijing, China. Appl Environ Microb 75 : 4046 4052.
    • (2009) Appl Environ Microb , vol.75 , pp. 4046-4052
    • Lin, W.1    Pan, Y.2
  • 20
    • 38349177460 scopus 로고    scopus 로고
    • Does capillary racetrack-based enrichment reflect the diversity of uncultivated magnetotactic cocci in environmental samples?
    • Lin W, Tian L, Li J Pan Y (2008) Does capillary racetrack-based enrichment reflect the diversity of uncultivated magnetotactic cocci in environmental samples? FEMS Microbiol Lett 279 : 202 206.
    • (2008) FEMS Microbiol Lett , vol.279 , pp. 202-206
    • Lin, W.1    Tian, L.2    Li, J.3    Pan, Y.4
  • 21
    • 67149119809 scopus 로고    scopus 로고
    • Diversity analysis of magnetotactic bacteria in Lake Miyun, northern China, by restriction fragment length polymorphism
    • Lin W, Li J, Schüler D, Jogler C Pan Y (2009) Diversity analysis of magnetotactic bacteria in Lake Miyun, northern China, by restriction fragment length polymorphism. Syst Appl Microbiol 32 : 342 350.
    • (2009) Syst Appl Microbiol , vol.32 , pp. 342-350
    • Lin, W.1    Li, J.2    Schüler, D.3    Jogler, C.4    Pan, Y.5
  • 23
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone CA, Hamady M Knight R (2006) UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7 : 371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.A.1    Hamady, M.2    Knight, R.3
  • 24
    • 33947269742 scopus 로고    scopus 로고
    • Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
    • Lozupone CA, Hamady M, Kelley ST Knight R (2007) Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microb 73 : 1576 1585.
    • (2007) Appl Environ Microb , vol.73 , pp. 1576-1585
    • Lozupone, C.A.1    Hamady, M.2    Kelley, S.T.3    Knight, R.4
  • 26
    • 3042858997 scopus 로고    scopus 로고
    • Bacterial magnetite in lake sediments: Late glacial to Holocene climate and sedimentary changes in northern Norway
    • Paasche O, Lovlie R, Dahl S, Bakke J Nesje A (2004) Bacterial magnetite in lake sediments: Late glacial to Holocene climate and sedimentary changes in northern Norway. Earth Planet Sc Lett 223 : 319 333.
    • (2004) Earth Planet Sc Lett , vol.223 , pp. 319-333
    • Paasche, O.1    Lovlie, R.2    Dahl, S.3    Bakke, J.4    Nesje, A.5
  • 30
    • 69449085719 scopus 로고    scopus 로고
    • Combined approaches for characterization of an uncultivated magnetotactic coccus from Lake Miyun near Beijing
    • Pan Y, Lin W, Tian L, Zhu R Petersen N (2009a) Combined approaches for characterization of an uncultivated magnetotactic coccus from Lake Miyun near Beijing. Geomicrobiol J 26 : 313 320.
    • (2009) Geomicrobiol J , vol.26 , pp. 313-320
    • Pan, Y.1    Lin, W.2    Tian, L.3    Zhu, R.4    Petersen, N.5
  • 31
    • 69449101253 scopus 로고    scopus 로고
    • Reduced efficiency of magnetotaxis in magnetotactic coccoid bacteria in higher than geomagnetic fields
    • Pan Y, Lin W, Li J, Wu W, Tian L, Deng C, Liu Q, Zhu R, Winklhofer M Petersen N (2009b) Reduced efficiency of magnetotaxis in magnetotactic coccoid bacteria in higher than geomagnetic fields. Biophys J 97 : 986 991.
    • (2009) Biophys J , vol.97 , pp. 986-991
    • Pan, Y.1    Lin, W.2    Li, J.3    Wu, W.4    Tian, L.5    Deng, C.6    Liu, Q.7    Zhu, R.8    Winklhofer, M.9    Petersen, N.10
  • 32
    • 0027431576 scopus 로고
    • Detection of live magnetotactic bacteria in South-Atlantic deep-sea sediments
    • Petermann H Bleil U (1993) Detection of live magnetotactic bacteria in South-Atlantic deep-sea sediments. Earth Planet Sc Lett 117 : 223 228.
    • (1993) Earth Planet Sc Lett , vol.117 , pp. 223-228
    • Petermann, H.1    Bleil, U.2
  • 33
    • 44849083494 scopus 로고    scopus 로고
    • Genetics and cell biology of magnetosome formation in magnetotactic bacteria
    • Schüler D (2008) Genetics and cell biology of magnetosome formation in magnetotactic bacteria. FEMS Microbiol Rev 32 : 654 672.
    • (2008) FEMS Microbiol Rev , vol.32 , pp. 654-672
    • Schüler, D.1
  • 34
    • 3843085407 scopus 로고    scopus 로고
    • Seasonal and vertical distribution of planktonic bacteria and heterotrophic nanoflagellates in the middle Adriatic Sea
    • Sestanovic S, Solic M, Krstulovic N Nincevic K (2004) Seasonal and vertical distribution of planktonic bacteria and heterotrophic nanoflagellates in the middle Adriatic Sea. Helgoland Mar Res 58 : 83 92.
    • (2004) Helgoland Mar Res , vol.58 , pp. 83-92
    • Sestanovic, S.1    Solic, M.2    Krstulovic, N.3    Nincevic, K.4
  • 36
    • 8144223173 scopus 로고    scopus 로고
    • Spatiotemporal distribution of marine magnetotactic bacteria in a seasonally stratified coastal salt pond
    • Simmons SL, Sievert SM, Frankel RB, Bazylinski DA Edwards KJ (2004) Spatiotemporal distribution of marine magnetotactic bacteria in a seasonally stratified coastal salt pond. Appl Environ Microb 70 : 6230 6239.
    • (2004) Appl Environ Microb , vol.70 , pp. 6230-6239
    • Simmons, S.L.1    Sievert, S.M.2    Frankel, R.B.3    Bazylinski, D.A.4    Edwards, K.J.5
  • 37
    • 0032910913 scopus 로고    scopus 로고
    • The mineral magnetic properties of an annually laminated Holocene lake-sediment sequence in northern Sweden
    • Snowball I, Sandgren P Petterson G (1999) The mineral magnetic properties of an annually laminated Holocene lake-sediment sequence in northern Sweden. Holocene 9 : 353 362.
    • (1999) Holocene , vol.9 , pp. 353-362
    • Snowball, I.1    Sandgren, P.2    Petterson, G.3
  • 38
    • 0036149346 scopus 로고    scopus 로고
    • Bacterial magnetite in Swedish varved lake-sediments: A potential bio-marker of environmental change
    • Snowball I, Zillen L Sandgren P (2002) Bacterial magnetite in Swedish varved lake-sediments: A potential bio-marker of environmental change. Quatern Int 88 : 13 19.
    • (2002) Quatern Int , vol.88 , pp. 13-19
    • Snowball, I.1    Zillen, L.2    Sandgren, P.3
  • 39
    • 0026520954 scopus 로고
    • Phylogenetic diversity and identification of nonculturable magnetotactic bacteria
    • Spring S, Amann R, Ludwig W, Schleifer KH Petersen N (1992) Phylogenetic diversity and identification of nonculturable magnetotactic bacteria. Syst Appl Microbiol 15 : 116 122.
    • (1992) Syst Appl Microbiol , vol.15 , pp. 116-122
    • Spring, S.1    Amann, R.2    Ludwig, W.3    Schleifer, K.H.4    Petersen, N.5
  • 40
    • 0027338307 scopus 로고
    • Dominating role of an unusual magnetotactic bacterium in the microaerobic zone of a freshwater sediment
    • Spring S, Amann R, Ludwig W, Schleifer KH, van Gemerden H Petersen N (1993) Dominating role of an unusual magnetotactic bacterium in the microaerobic zone of a freshwater sediment. Appl Environ Microb 59 : 2397 2403.
    • (1993) Appl Environ Microb , vol.59 , pp. 2397-2403
    • Spring, S.1    Amann, R.2    Ludwig, W.3    Schleifer, K.H.4    Van Gemerden, H.5    Petersen, N.6
  • 42
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24 : 1596 1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 43
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 : 4673 4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


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