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Volumn 40, Issue 1, 2012, Pages

Ultrasensitive detection of rare mutations using next-generation targeted resequencing

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OSELTAMIVIR; VIRUS SIALIDASE;

EID: 84855286473     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr861     Document Type: Article
Times cited : (100)

References (21)
  • 2
    • 77956522256 scopus 로고    scopus 로고
    • Characterization of quasispecies of pandemic 2009 influenza A virus (A/H1N1/2009) by de novo sequencing using a next-generation DNA sequencer
    • Kuroda, M., Katano, H., Nakajima, N., Tobiume, M., Ainai, A., Sekizuka, T., Hasegawa, H., Tashiro, M., Sasaki, Y., Arakawa, Y. et al. (2010) Characterization of quasispecies of pandemic 2009 influenza A virus (A/H1N1/2009) by de novo sequencing using a next-generation DNA sequencer. PLoS One, 5, e10256.
    • (2010) PLoS One , vol.5
    • Kuroda, M.1    Katano, H.2    Nakajima, N.3    Tobiume, M.4    Ainai, A.5    Sekizuka, T.6    Hasegawa, H.7    Tashiro, M.8    Sasaki, Y.9    Arakawa, Y.10
  • 3
    • 66249094578 scopus 로고    scopus 로고
    • Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo
    • Tsibris, A.M., Korber, B., Arnaout, R., Russ, C., Lo, C.C., Leitner, T., Gaschen, B., Theiler, J., Paredes, R., Su, Z. et al. (2009) Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo. PLoS One, 4, e5683.
    • (2009) PLoS One , vol.4
    • Tsibris, A.M.1    Korber, B.2    Arnaout, R.3    Russ, C.4    Lo, C.C.5    Leitner, T.6    Gaschen, B.7    Theiler, J.8    Paredes, R.9    Su, Z.10
  • 4
    • 34547643929 scopus 로고    scopus 로고
    • Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistance
    • DOI 10.1101/gr.6468307
    • Wang, C., Mitsuya, Y., Gharizadeh, B., Ronaghi, M. and Shafer, R.W. (2007) Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance. Genome Res., 17, 1195-1201. (Pubitemid 47204863)
    • (2007) Genome Research , vol.17 , Issue.8 , pp. 1195-1201
    • Wang, C.1    Mitsuya, Y.2    Gharizadeh, B.3    Ronaghi, M.4    Shafer, R.W.5
  • 6
    • 65249131713 scopus 로고    scopus 로고
    • Rare variants of IFIH1, a gene implicated in antiviral responses, protect against type 1 diabetes
    • Nejentsev, S., Walker, N., Riches, D., Egholm, M. and Todd, J.A. (2009) Rare variants of IFIH1, a gene implicated in antiviral responses, protect against type 1 diabetes. Science, 324, 387-389.
    • (2009) Science , vol.324 , pp. 387-389
    • Nejentsev, S.1    Walker, N.2    Riches, D.3    Egholm, M.4    Todd, J.A.5
  • 7
    • 0034999807 scopus 로고    scopus 로고
    • Denaturing high-performance liquid chromatography: A review
    • DOI 10.1002/humu.1130
    • Xiao, W. and Oefner, P.J. (2001) Denaturing high-performance liquid chromatography: a review. Hum. Mutat., 17, 439-474. (Pubitemid 32480082)
    • (2001) Human Mutation , vol.17 , Issue.6 , pp. 439-474
    • Xiao, W.1    Oefner, P.J.2
  • 9
    • 0030791025 scopus 로고    scopus 로고
    • Methods for detection of point mutations: Performance and quality assessment
    • Nollau, P. and Wagener, C. (1997) Methods for detection of point mutations: performance and quality assessment. IFCC Scientific Division, Committee on Molecular Biology Techniques. Clin. Chem., 43, 1114-1128. (Pubitemid 27297254)
    • (1997) Clinical Chemistry , vol.43 , Issue.7 , pp. 1114-1128
    • Nollau, P.1    Wagener, C.2
  • 12
    • 77958102016 scopus 로고    scopus 로고
    • Statistical analysis strategies for association studies involving rare variants
    • Bansal, V., Libiger, O., Torkamani, A. and Schork, N.J. (2010) Statistical analysis strategies for association studies involving rare variants. Nat. Rev. Genet., 11, 773-785.
    • (2010) Nat. Rev. Genet , vol.11 , pp. 773-785
    • Bansal, V.1    Libiger, O.2    Torkamani, A.3    Schork, N.J.4
  • 13
    • 77954202495 scopus 로고    scopus 로고
    • A statistical method for the detection of variants from next-generation resequencing of DNA pools
    • Bansal, V. (2010) A statistical method for the detection of variants from next-generation resequencing of DNA pools. Bioinformatics, 26, i318-i324.
    • (2010) Bioinformatics , vol.26
    • Bansal, V.1
  • 14
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure, J. and Ji, H. (2008) Next-generation DNA sequencing. Nat. Biotechnol., 26, 1135-1145.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 16
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • Dohm, J.C., Lottaz, C., Borodina, T. and Himmelbauer, H. (2008) Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res., 36, e105.
    • (2008) Nucleic Acids Res. , vol.36
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 17
    • 70349883667 scopus 로고    scopus 로고
    • World Health Organization Centers for Disease Control and Prevention 17 October 2011, date last accessed
    • World Health Organization, (2009) Centers for Disease Control and Prevention. CDC protocol of real-time RT-PCR for influenza A(H1N1), (2009) . http://www.who.int/csr/resources/publications/swineflu/CDCRealtimeRTPCR- SwineH1Assay-2009-20090430.pdf (17 October 2011, date last accessed).
    • (2009) CDC Protocol of Real-time RT-PCR for Influenza A(H1N1)
  • 18
    • 0033931867 scopus 로고    scopus 로고
    • Assessing the accuracy of prediction algorithms for classification: An overview
    • Baldi, P., Brunak, S., Chauvin, Y., Andersen, C.A. and Nielsen, H. (2000) Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics, 16, 412-424. (Pubitemid 30487963)
    • (2000) Bioinformatics , vol.16 , Issue.5 , pp. 412-424
    • Baldi, P.1    Brunak, S.2    Chauvin, Y.3    Andersen, C.A.F.4    Nielsen, H.5
  • 19
    • 78650735473 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
    • Shi, L., Campbell, G., Jones, W.D., Campagne, F., Wen, Z., Walker, S.J., Su, Z., Chu, T.M., Goodsaid, F.M., Pusztai, L. et al. (2010) The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat. Biotechnol., 28, 827-838.
    • (2010) Nat. Biotechnol , vol.28 , pp. 827-838
    • Shi, L.1    Campbell, G.2    Jones, W.D.3    Campagne, F.4    Wen, Z.5    Walker, S.J.6    Su, Z.7    Chu, T.M.8    Goodsaid, F.M.9    Pusztai, L.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.