Natural attenuation is enhanced in previously contaminated and coniferous forest soils

Environmental Science and Pollution Research

Volumn 19, Issue 1, 2012, Pages 53-63

  Kauppi, Sari ^a   Romantschuk, Martin ^a   Strömmer, Rauni ^a   Sinkkonen, Aki ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Bacterial community composition; Biodegradation; Coniferous forest organic soil; Diesel oil hydrocarbons; Soil type

Indexed keywords

GASOLINE; HYDROCARBON; MINERAL; RNA 16S;

ADAPTATION; BACTERIUM; BIOREMEDIATION; COMMUNITY STRUCTURE; CONCENTRATION (COMPOSITION); CONIFEROUS FOREST; DIESEL; ELECTROKINESIS; FOREST SOIL; GEL; GENETIC ANALYSIS; MESOCOSM; MINERAL; ORGANIC POLLUTANT; POLLUTION EFFECT; PRISTINE ENVIRONMENT; SOIL POLLUTION; SOIL REMEDIATION; SOIL TYPE;

ARTICLE; BIOREMEDIATION; COMPARATIVE STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; METABOLISM; MICROBIOLOGY; SOIL POLLUTANT; TREE;

BIODEGRADATION, ENVIRONMENTAL; DENATURING GRADIENT GEL ELECTROPHORESIS; GASOLINE; HYDROCARBONS; MINERALS; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY; SOIL POLLUTANTS; TREES;

BACTERIA (MICROORGANISMS);

EID: 84855283227     PISSN: 09441344     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11356-011-0528-y     Document Type: Article

References (43)

1. Aislabie J, McLeod M, Fraser R (1998) Potential for biodegradation of hydrocarbons in soil from the Ross Dependency, Antarctica. Appl Microbiol Biotechnol 49: 210-214.
2. Aislabie J, Balks M, Astori N, Stevenson G, Symons R (1999) Polycyclic aromatic hydrocarbons in fuel-oil contaminated soils, Antarctica. Chemosphere 39: 2201-2207.
3. Aislabie J, Foght J, Saul D (2000) Aromatic hydrocarbon-degrading bacteria from soil near Scott Base, Antarctica. Polar Biol 23: 183-188.
4. Aislabie J, Saul DJ, Foght JM (2006) Bioremediation of hydrocarbon-contaminated polar soils. Extremophiles 10: 171-179.
5. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL (2000) GenBank. Nucleic Acids Res 28: 15-18.
6. Bundy JG, Paton GI, Campbell CD (2002) Microbial communities in different soil types do not converge after diesel contamination. J Appl Microbiol 92: 276-288.
7. Chaineau CH, Morel J, Dupont J, Bury E, Oudot J (1999) Comparison of the fuel oil biodegradation potential of hydrocarbon-assimilating microorganisms isolated from a temperate agricultural soil. Sci Total Environ 227: 237-247.
8. Gentry TJ, Josephson KL, Pepper IL (2004) Functional establishment of introduced chlorobenzoate degraders following bioaugmentation with newly activated soil-enhanced contaminant remediation via activated soil bioaugmentation. Biodegradation 15: 67-75.
9. Greenwood PF, Wibrow S, George SJ, Tibbett M (2009) Hydrocarbon biodegradation and soil microbial community response to repeated oil exposure. Org Geochem 40: 293-300.
10. Hultman J, Pitkäranta M, Romantschuk M, Auvinen P, Paulin L (2008) Probe-based negative selection for underrepresented phylotypes in large environmental clone libraries. J Microbiol Methods 75: 457-463.
11. Kanerva S, Kitunen V, Kiikkilä O, Loponen J, Smolander A (2006) Response of soil C and N transformations to tannin fractions originating from Scots pine and Norway spruce needles. Soil Biol Biochem 38: 1364-1374.
12. 2. Soil Biol Biochem 40: 2502-2510.
13. Kauppi S, Sinkkonen A, Romantschuk M (2011) Enhancing bioremediation of diesel-fuel-contaminated soil in a boreal climate: comparison of biostimulation and bioaugmentation. Int Biodeterior Biodegrad 65: 359-368.
14. Koivula TT, Salkinoja-Salonen M, Peltola R, Romantschuk M (2004) Pyrene degradation in forest humus microcosms with or without pine and its mycorrhizal fungus. J Environ Qual 33: 45-53.
15. Kurola J, Salkinoja-Salonen M, Aarnio T, Hultman J, Romantschuk M (2005) Activity, diversity and population size of ammonia-oxidising bacteria in oil-contaminated landfarming soil. FEMS Microbiol Lett 250: 33-38.
16. Labbe D, Margesin R, Schinner F, Whyte LG, Greer CW (2007) Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils. FEMS Microbiol Ecol 59: 466-475.
17. Labud V, Garcia C, Hernandez T (2007) Effect of hydrocarbon pollution on the microbial properties of a sandy and a clay soil. Chemosphere 66: 1863-1871.
18. Leahy JG, Colwell RR (1990) Microbial-degradation of hydrocarbons in the environment. Microbiol Rev 54: 305-315.
19. Margesin R (2000) Potential of cold-adapted microorganisms for bioremediation of oil-polluted Alpine soils. Int Biodeterior Biodegrad 46: 3-10.
20. Margesin R, Schinner F (1999a) Biodegradation of diesel oil by cold-adapted microorganisms in presence of sodium dodecyl sulfate. Chemosphere 38: 3463-3472.
21. Margesin R, Schinner F (1999b) Biological decontamination of oil spills in cold environments. J Chem Technol Biotechnol 74: 381-389.
22. Margesin R, Haemmerle M, Tscherko D (2007) Microbial activity and community composition during bioremediation of diesel-oil-contaminated soil: effects of hydrocarbon concentration, fertilizers, and incubation time. Microb Ecol 53: 259-269.
23. Muyzer G (1999) DGGE/TGGE a method for identifying genes from natural ecosystems. Curr Opin Microbiol 2: 317-322.
24. Muyzer G, Smalla K (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Leeuwenhoek 73: 127-141.
25. Muyzer G, Dewaal EC, Uitterlinden AG (1993) Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16s ribosomal-RNA. Appl Environ Microbiol 59: 695-700.
26. Peltola R, Salkinoja-Salonen M, Pulkkinen J, Koivunen M, Turpeinen AR, Aarnio T, Romantschuk M (2006) Nitrification in polluted soil fertilized with fast- and slow-releasing nitrogen: a case study at a refinery landfarming site. Environ Pollut 143: 247-253.
27. Penet S, Vendeuvre C, Bertoncini F, Marchal R, Monot F (2006) Characterisation of biodegradation capacities of environmental microflorae for diesel oil by comprehensive two-dimensional gas chromatography. Biodegradation 17: 577-585.
28. Romantschuk M, Sarand I, Petänen T, Peltola R, Jonsson-Vihanne M, Koivula T, Yrjälä K, Haahtela K (2000) Means to improve the effect of in situ bioremediation of contaminated soil: an overview of novel approaches. Environ Pollut 107: 179-185.
29. Sarand I, Haario H, Jorgensen KS, Romantschuk M (2000) Effect of inoculation of a TOL plasmid containing mycorrhizosphere bacterium on development of Scots pine seedlings, their mycorrhizosphere and the microbial flora in m-toluate-amended soil. FEMS Microbiol Ecol 31: 127-141.
30. Sarand I, Skarfstad E, Forsman M, Romantschuk M, Shingler V (2001) Role of the DmpR-mediated regulatory circuit in bacterial biodegradation properties in methylphenol-amended soils. Appl Environ Microbiol 67: 162-171.
31. Saul DJ, Aislabie JM, Brown CE, Harris L, Foght JM (2005) Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antarctica. FEMS Microbiol Ecol 53: 141-155.
32. Schlueter PM, Harris SA (2006) Analysis of multilocus fingerprinting data sets containing missing data. Mol Ecol Notes 6: 569-572.
33. Scragg A (2005) Environmental biotechnology. Oxford University Press, Oxford.
34. Sjøholm OR, Aamand J, Sørensen J, Nybroe O (2010) Degrader density determines spatial variability of 2, 6-dichlorobenzamide mineralisation in soil. Environ Pollut 158: 292-298.
35. Springael D, Top EM (2004) Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies. Trends Microbiol 12: 53-58.
36. Suni S, Malinen E, Kosonen J, Silvennoinen H, Romantschuk M (2007) Electrokinetically enhanced bioremediation of creosote-contaminated soil: laboratory and field studies. J Environ Sci Health Part A-Toxic/Hazard Subst Environ Eng 42: 277-287.
37. Tan X, Chang SX (2007) Soil compaction and forest litter amendment affect carbon and net nitrogen mineralization in a boreal forest soil. Soil Tillage Res 93: 77-86.
38. Timmis KN (ed) (2010) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin.
39. Vogel TM (1996) Bioaugmentation as a soil bioremediation approach. Curr Opin Biotechnol 7: 311-316.
40. Welander U (2005) Microbial degradation of organic pollutants in soil in a cold climate. Soil Sediment Contam 14: 281-291.
41. Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA (2000) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 28: 10-14.
42. Widmer F, Seidler RJ, Gillevet PM, Watrud LS, Di Giovanni GD (1998) A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples. Appl Environ Microbiol 64: 2545-2553.
43. Yang S-Z, Jin H-J, Wei Z, He R-X, Ji Y-J, Li X-M, Yu S-P (2009) Bioremediation of oil spills in cold environments: a review. Pedosphere 19: 371-381.