Real-time RT-PCR for detection of Raspberry bushy dwarf virus, Raspberry leaf mottle virus and characterizing synergistic interactions in mixed infections

Journal of Virological Methods

Volumn 179, Issue 1, 2012, Pages 38-44

  Quito Avila, Diego F ^a   Martin, Robert R ^a,b  

^a OREGON STATE UNIVERSITY   (United States)

^b HORTICULTURAL CROPS RESEARCH LABORATORY   (United States)

Author keywords

Leaf mottle; Raspberry bushy dwarf; Synergistic interaction; TaqMan detection; Virus

Indexed keywords

VIRUS RNA;

AMPLICON; ARTICLE; CLOSTEROVIRUS; CONTROLLED STUDY; DISEASE ASSOCIATION; DISEASE EXACERBATION; INTERMETHOD COMPARISON; MIXED INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; RASPBERRY BUSHY DRAWF VIRUS; RASPBERRY LEAF MOTTLE VIRUS; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; SPECIES CONSERVATION; VIRUS CELL INTERACTION; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS ISOLATION;

ANIMALS; APHIDS; COINFECTION; DNA PRIMERS; EUROPE; MOLECULAR SEQUENCE DATA; NORTH AMERICA; PLANT DISEASES; PLANT VIRUSES; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; VIROLOGY;

APHIDIDAE; RASPBERRY BUSHY DWARF VIRUS; RUBUS GLAUCUS;

EID: 84855251010     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2011.09.016     Document Type: Article

References (50)

1. Anjos J.R., Jarlfors U., Ghabrial S.A. Soybean mosaic potyvirus enhances the titer of two comoviruses in dually infected soybean plants. Phytopathology 1992, 82:1022-1027.
2. Ayllon M.A., Rubio L., Sentandreu V., Moya A., Guerri J., Moreno P. Variations in two gene sequences of Citrus tristeza virus after host passage. Virus Genes 2006, 32:119-128.
3. Cadman C.H. Studies in Rubus virus diseases. I. A latent virus of Norfolk Giant raspberry. Ann. Appl. Biol. 1951, 38:801-811.
4. Cadman C.H. Studies in Rubus virus diseases. III. A vein-banding disease of raspberries. Ann. Appl. Biol. 1952, 39:69-77.
5. Chamberlain C.J., Kraus J., Kohnen P.D., Finn C.E., Martin R.R. First report of Raspberry bushy dwarf virus in Rubus multibracteatus from China. Plant Dis. 2003, 87:603.
6. Converse R.H., Stace-Smith R., Jones A.T. Raspberry mosaic. Virus Diseases of Small Plants Agriculture Handbook No 631 1987, 168-175. USDA ARS, Washington, DC. R.H. Converse (Ed.).
7. Ellis, M., Martin, R.R., Wright, S.R., 2005. First report of raspberry bushy dwarf virus in Ohio. Plant Health Progress PHP-2005-0510-01-HN.
8. Fridlund P.R. Virus and viruslike diseases of pome fruits and simulating noninfectious disorders. Cooperative Extension College of Agriculture and Home Economics 1989, Washington State University, Pullman, WA.
9. Goldberg K.B., Brakke M.K. Concentration of maize chlorotic mottle virus increased in mixed infections with maize dwarf mosaic virus, strain B. Phytopathology 1987, 77:162-167.
10. Halgren A., Tzanetakis I.E., Martin R.R. Identification, characterization, and detection of Black raspberry necrosis virus. Phytopathology 2007, 97:44-50.
11. Harper S., Delmiglio C., Ward L., Clover G. Detection of tomato black ring virus by real-time one-step RT-PCR. J. Virol. Methods 2011, 171:190-194.
12. Jones A.T. Some effects of latent virus infection in red raspberry. Acta Hort. 1980, 95:63-70.
13. Jones A.T. Distinctions between three aphid-borne latent viruses of raspberry. Acta Hort. 1982, 129:41-48.
14. Jones A.T., Murant A. Etiology of a mosaic disease of " Glen Clova" red raspberry. Horticult. Res. 1975, 14:89-95.
15. Jones A.T., McGavin W.J., Geering A.D., Lockhart B.E. Identification of Rubus yellow net virus as a disctinct badnavirus and its detection by PCR in Rubus species and in aphids. Ann. Appl. Biol. 2002, 141:1-10.
16. Karasev A.V. Genetic diversity and evolution of closteroviruses. Ann. Rev. Phytopathology 2000, 38:293-324.
17. Karyeija R.F., Kreuze J.F., Gibson R.W., Valkonen J.P. Synergistic interactions of a potyvirus and a phloem-limited crinivirus in sweet potato plants. Virology 2000, 269:26-36.
18. Kassanis B. Interactions of viruses in plants. Adv. Virus Res. 1963, 10:219-255.
19. Kokko H.I., Kivineva M., Karenlampi S.O. Single-step immunocapture RT-PCR in the detection of raspberry bushy dwarf virus. Biotechniques 1996, 20:842-846.
20. Lopez R., Asensio C., Guzman M.M., Boonham N. Development of a real-time and conventional RT-PCR assays for the detection of potato yellow vein virus (PYVV). J. Virol. Methods 2006, 136:24-29.
21. McGavin W.J., MacFarlane S.A. Sequence similarities between Raspberry leaf mottle virus, Raspberry leaf spot virus and the closterovirus Raspberry mottle virus. Ann. App. Bio. 2010, 156:439-448.
22. Martin R.R., Tzanetakis I.E. Characterization of three novel viruses infecting raspberry. Phytopathology 2005, 95:S66.
23. Martin, R.R., MacFarlane, S., Sabanadzovic, S., Quito-Avila, D.F., Poudel, B., Tzanetakis, I.E. Viruses and virus diseases of Rubus. Plant Dis., in press.
24. Mavric I., Virscek M., Sirca S., Urek G. Biological, serological and molecular characterization of Raspberry bushy dwarf virus from grapevine and its detection in the nematode Longidorus juvenilis. Eur. J. Plant. Pathol. 2009, 123:261-268.
25. Murant A.F. Viruses affecting raspberry in Scotland. Scott. Hortic. Res. Inst. Assoc. Bull. 1974, 9:37-43.
26. ®) assay for the detection of Grapevine leafroll associated viruses 1-5 and 9. J. Virol. Methods 2007, 141:22-29.
27. Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29(9):e45. 2001.
28. Pruss G., Ge X., Shi X.M., Carrington J.C., Vance V.B. Plant viral synergism: the potyviral genome encodes a broad-range pathogenicity enhancer that transactivates replication of heterologous viruses. Plant Cell 1997, 9:859-868.
29. Pūpola N., Lepse L., Kāle A., Moročko-Bičevska I. Occurrence of RBDV in Latvia and Virus Elimination in vitro by Chemotherapy 2009, Scientific Works of the Lithuanian Institute of Horticulture and Lithuanian University of Agriculture, Sodininkysṫ Ir DarŽininkysṫ, 28(3).
30. Quito-Avila D.F., Jelkmann W., Alt S., Leible S., Martin R.R. A new member of the family Reoviridae may contribute to severe crumbly fruit in red raspberry, Rubus idaeus 'Meeker'. Proceedings of the 21st International Conference on Virus and Other Graft Transmissible Diseases of Fruit Crops 2009, 18-23.
31. Quito-Avila D., Jelkmann W., Tzanetakis I., Keller K., Martin R.R. Complete sequence and genetic characterization of Raspberry latent virus, a novel member of the family Reoviridae. Virus Res. 2011, 55:397-405.
32. Rott M.E., Jelkmann W. Characterization and detection of several filamentous viruses of cherry: adaptation of an alternative cloning method (DOP-PCR), and modification of an RNA extraction protocol. Eur. J. Plant Pathol. 2001, 107:411-420.
33. Scheets K. Maize chlorotic mottle machlomovirus and wheat streak mosaic rymovirus concentrations increase in the synergistic disease corn lethal necrosis. Virology 1998, 242:28-38.
34. Sentandreu V., Castro J.A., Ayllon M.A., Rubio L., Guerri J., Gonzalez-Candelas F., Moreno P., Moya A. Evolutionary analysis of genetic variation observed in Citrus tristeza virus (CTV) after host passage. Arch. Virol. 2006, 151:875-894.
35. Shiller J.B., Lebas B.S., Horner M., Pearson M.N., Clover G.R. Sensitive detection of viruses in pollen using conventional and real-time reverse transcription-polymerase chain reaction. J. Phytopathol. 2010, 158:758-759.
36. Staley M., Dorman K., Bartholomay L., Fernandez-Salas I., Farfan-Ale J., Lorono-Pino M., Garcia-Rejon J., Ibarra-Juarez L., Blitvich B. Universal primers for the amplification and sequence analysis of Actin-1 from diverse mosquito species. J. Am. Mosq. Control Assoc. 2010, 26:214-218.
37. Stenger D.C., Young B.A., Qu F., Morris T.J., French R. Wheat streak mosaic virus lacking helper component-proteinase is competent to produce disease synergism in double infections with Maize chlorotic mottle virus. Phytopathology 2007, 97:1213-1221.
38. Strik B., Martin R.R. Impact of Raspberry bushy dwarf virus on 'Marion' blackberry. Plant Dis. 2003, 87:294-296.
39. Susaimuthu J., Tzanetakis I.E., Gergerich R.C., Kim S.K., Martin R.R. Viral interactions lead to decline of blackberry plants. Plant Dis. 2008, 92:1288-1292.
40. Tatineni S., Graybosch R.A., Hein G.L., Wegulo S.N., French R. Wheat cultivar-specific disease synergism and alteration of virus accumulation during co-infection with Wheat streak mosaic virus and Triticum mosaic virus. Phytopathology 2010, 100:230-238.
41. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
42. Thompson J., Wetzel S., Klerks M., Vaskova D., Schoen C., Spak J., Jelkmann W. Multiplex RT-PCR detection of four aphid-borne strawberry viruses in Fragaria spp. in combination with a plant mRNA specific internal control. J. Virol. Methods 2003, 111:85-93.
43. Tzanetakis I.E., Halgren A., Mosier N., Martin R.R. Identification and characterization of Raspberry mottle virus, a novel member of the Closteroviridae. Virus Res. 2007, 127:26-33.
44. Tzanetakis I.E., Postman J.D., Martin R.R. Identification, detection and transmission of a new vitivirus from Mentha. Arch. Virol 2007, 152:2027-2033.
45. Valasevich N., Kukharchyk N., Kvarnheden A. Molecular characterization of Raspberry bushy dwarf virus isolates from Sweden and Belarus. Arch. Virol. 2011, 156:369-374.
46. Vance V.B. Replication of potato virus X RNA is altered in coinfections with potato virus Y. Virology 1991, 182:486-494.
47. Vance V.B. Synergism: plant viruses. Encyclopedia of Virology 1999, 1694-1699. Academic Press, San Diego, CA. 2nd ed. A. Granoff, R.G. Webster (Eds.).
48. VirŠček M., Mavrič I., GorŠek J., Nyerges K., Lázár J., Tökés á. Comparison of Raspberry bushy dwarf virus isolates from Hungary and Slovenia. Proceedings of the 21st International Conference on Virus and Other Graft Transmissible Diseases of Fruit Crops 2010, 206-209.
49. Voinnet O., Pinto Y.M., Baulcombe D.C. Suppression of gene silencing: a general strategy used by diverse DNA and RNA viruses of plants. Proc. Natl. Acad. Sci. U.S.A. 1999, 96:14147-14152.
50. Wintermantel W.M., Cortez A.A., Anchieta A.G., Gulati-Sakhuja A., Hladky L.L. Co-infection by two criniviruses alters accumulation of each virus in a host-specific manner and influences efficiency of virus transmission. Phytopathology 2008, 98:1340-1345.