-
1
-
-
0000724617
-
Structure and function of nucleic acids as cell constituents
-
Chargaff E. Structure and function of nucleic acids as cell constituents. Federation proceedings 1951, 10:654-659.
-
(1951)
Federation proceedings
, vol.10
, pp. 654-659
-
-
Chargaff, E.1
-
2
-
-
0032860238
-
Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms
-
10.1016/S0378-1119(99)00297-8, 10570985
-
Frank AC, Lobry JR. Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms. Gene 1999, 238:65-77. 10.1016/S0378-1119(99)00297-8, 10570985.
-
(1999)
Gene
, vol.238
, pp. 65-77
-
-
Frank, A.C.1
Lobry, J.R.2
-
3
-
-
77958574984
-
New views on strand asymmetry in insect mitochondrial genomes
-
10.1371/journal.pone.0012708, 2939890, 20856815
-
Wei S-J, Shi M, Chen X-X, Sharkey MJ, van Achterberg C, Ye G-Y, He J-H. New views on strand asymmetry in insect mitochondrial genomes. PLoS ONE 2010, 5(9):e12708. 10.1371/journal.pone.0012708, 2939890, 20856815.
-
(2010)
PLoS ONE
, vol.5
, Issue.9
-
-
Wei, S.-J.1
Shi, M.2
Chen, X.-X.3
Sharkey, M.J.4
van Achterberg, C.5
Ye, G.-Y.6
He, J.-H.7
-
4
-
-
77957337127
-
Epigenetically -inherited centromere and neocentromere DNA replicates earliest in S-phase
-
10.1371/journal.pgen.1001068, 2924309, 20808889
-
Koren A, Tsai H-J, Tirosh I, Burrack LS, Barkai N, Berman J. Epigenetically -inherited centromere and neocentromere DNA replicates earliest in S-phase. PLoS Genetics 2010, 6(8):e1001068. 10.1371/journal.pgen.1001068, 2924309, 20808889.
-
(2010)
PLoS Genetics
, vol.6
, Issue.8
-
-
Koren, A.1
Tsai, H.-J.2
Tirosh, I.3
Burrack, L.S.4
Barkai, N.5
Berman, J.6
-
5
-
-
22244455429
-
Replication-associated strand asymmetries in mammalian genomes: towards detection of replication origins
-
10.1073/pnas.0500577102, 1174978, 15985556
-
Touchon M, Nicolay S, Audit B, Brodie of Brodie E-B, d'Aubenton-Carafa Y, Arneodo A, Thermes C. Replication-associated strand asymmetries in mammalian genomes: towards detection of replication origins. PNAS 2005, 102(28):9836-9841. 10.1073/pnas.0500577102, 1174978, 15985556.
-
(2005)
PNAS
, vol.102
, Issue.28
, pp. 9836-9841
-
-
Touchon, M.1
Nicolay, S.2
Audit, B.3
Brodie of Brodie, E.-B.4
d'Aubenton-Carafa, Y.5
Arneodo, A.6
Thermes, C.7
-
6
-
-
4644246096
-
Transcription-coupled and splicing-coupled strand assymentries in eukaryotic genomes
-
10.1093/nar/gkh823, 521644, 15388799
-
Touchon M, Arneodo A, d'Aubenton-Carafa Y, Theremes C. Transcription-coupled and splicing-coupled strand assymentries in eukaryotic genomes. Nucleic acids research 2004, 32(17):4969-4978. 10.1093/nar/gkh823, 521644, 15388799.
-
(2004)
Nucleic acids research
, vol.32
, Issue.17
, pp. 4969-4978
-
-
Touchon, M.1
Arneodo, A.2
d'Aubenton-Carafa, Y.3
Theremes, C.4
-
7
-
-
9144242657
-
Comprehensive analysis of base composition around the transcription start site in metazoa
-
10.1186/1471-2164-5-34, 436054, 15171795
-
Aerts S, Thijs G, Dabrowski M, Moreau Y, De Moore B. Comprehensive analysis of base composition around the transcription start site in metazoa. BMC Genomics 2004, 5:34. 10.1186/1471-2164-5-34, 436054, 15171795.
-
(2004)
BMC Genomics
, vol.5
, pp. 34
-
-
Aerts, S.1
Thijs, G.2
Dabrowski, M.3
Moreau, Y.4
De Moore, B.5
-
8
-
-
4944234699
-
Skew in GC content near the transcription start site in Arabidopsis thaliana
-
Tatarinova T, Brover V, Troukhan M, Alexandrov N. Skew in GC content near the transcription start site in Arabidopsis thaliana. Bioinformatics 2003, 19 S1:i313-i314.
-
(2003)
Bioinformatics
, vol.19
, Issue.S1
-
-
Tatarinova, T.1
Brover, V.2
Troukhan, M.3
Alexandrov, N.4
-
9
-
-
25444443669
-
GC-compositional strand bias around transcription start sites in plants and fungi
-
10.1186/1471-2164-6-26, 555766, 15733327
-
Fugimori S, Washiso T, Tomita M. GC-compositional strand bias around transcription start sites in plants and fungi. BMC Genomics 2005, 6:26. 10.1186/1471-2164-6-26, 555766, 15733327.
-
(2005)
BMC Genomics
, vol.6
, pp. 26
-
-
Fugimori, S.1
Washiso, T.2
Tomita, M.3
-
10
-
-
0037380022
-
Transcription-associated mutational asymmetry in mammalian evolution
-
10.1038/ng1103, 12612582
-
Green ED. Transcription-associated mutational asymmetry in mammalian evolution. Nature Genetics 2003, 33:514-517. 10.1038/ng1103, 12612582.
-
(2003)
Nature Genetics
, vol.33
, pp. 514-517
-
-
Green, E.D.1
-
11
-
-
33845289433
-
Similar compositional biases are caused by very different mutational effects
-
10.1101/gr.5525106, 1665637, 17068325
-
Rocha EPC, Touchon M, Feil EJ. Similar compositional biases are caused by very different mutational effects. Genome Research 2006, 16:1537-1547. 10.1101/gr.5525106, 1665637, 17068325.
-
(2006)
Genome Research
, vol.16
, pp. 1537-1547
-
-
Rocha, E.P.C.1
Touchon, M.2
Feil, E.J.3
-
12
-
-
48949094603
-
Transcription induces strand-specific mutations at the 5' ends of human genes
-
10.1101/gr.076570.108, 2493432, 18463301
-
Polak P, Ardnt PF. Transcription induces strand-specific mutations at the 5' ends of human genes. Genome Research 2008, 18:1216-1223. 10.1101/gr.076570.108, 2493432, 18463301.
-
(2008)
Genome Research
, vol.18
, pp. 1216-1223
-
-
Polak, P.1
Ardnt, P.F.2
-
13
-
-
57749208708
-
Transcription-induced mutational strand bias and its effect on substitution rates in human genes
-
Mugal CF, von Grunberg HH, Peifer M. Transcription-induced mutational strand bias and its effect on substitution rates in human genes. Molecular Biology and Evolution 2009, 26(1):131-142.
-
(2009)
Molecular Biology and Evolution
, vol.26
, Issue.1
, pp. 131-142
-
-
Mugal, C.F.1
von Grunberg, H.H.2
Peifer, M.3
-
14
-
-
78649985493
-
Intronic AT skew is a defendable proxy for germline transcription but does not predict crossing over or protein evolution rates in Drosophila melanogaster
-
10.1007/s00239-010-9395-2, 20938653
-
Weber CC, Hurst LD. Intronic AT skew is a defendable proxy for germline transcription but does not predict crossing over or protein evolution rates in Drosophila melanogaster. Journal of Molecular Evolution 2010, 71:415-426. 10.1007/s00239-010-9395-2, 20938653.
-
(2010)
Journal of Molecular Evolution
, vol.71
, pp. 415-426
-
-
Weber, C.C.1
Hurst, L.D.2
-
15
-
-
78649284973
-
Genomic signatures of germline expression
-
10.1101/gr.106666.110, 2963814, 20686123
-
McVicker G, Green P. Genomic signatures of germline expression. Genome Research 2010, 20:1503-1511. 10.1101/gr.106666.110, 2963814, 20686123.
-
(2010)
Genome Research
, vol.20
, pp. 1503-1511
-
-
McVicker, G.1
Green, P.2
-
16
-
-
0042887665
-
Dependence of mutational asymmetry on gene expression levels in the human genome
-
10.1086/378134, 1180696, 12881777
-
Majewski J. Dependence of mutational asymmetry on gene expression levels in the human genome. American Journal of Human Genetics 2003, 73:688-692. 10.1086/378134, 1180696, 12881777.
-
(2003)
American Journal of Human Genetics
, vol.73
, pp. 688-692
-
-
Majewski, J.1
-
17
-
-
77951715627
-
An evolutionarily conserved mechanism for controling the efficiency of protein translation
-
10.1016/j.cell.2010.03.031, 20403328
-
Tuller T, Carmi A, Vestsignian K, Navon S, Dorfan Y, Zaborske J, Pan T, Dahan O, Furman I, Pilpel Y. An evolutionarily conserved mechanism for controling the efficiency of protein translation. Cell 2010, 141:344-354. 10.1016/j.cell.2010.03.031, 20403328.
-
(2010)
Cell
, vol.141
, pp. 344-354
-
-
Tuller, T.1
Carmi, A.2
Vestsignian, K.3
Navon, S.4
Dorfan, Y.5
Zaborske, J.6
Pan, T.7
Dahan, O.8
Furman, I.9
Pilpel, Y.10
-
18
-
-
77951715627
-
A role for codon order in translation dynamics
-
10.1016/j.cell.2010.03.031, 20403328
-
Cannarozzi G, Schraudolph NN, Faty M, von Rohr P, Friberg MT, Roth AC, Gonnet P, Gonnet G, Barral Y. A role for codon order in translation dynamics. Cell 2010, 141:344-354. 10.1016/j.cell.2010.03.031, 20403328.
-
(2010)
Cell
, vol.141
, pp. 344-354
-
-
Cannarozzi, G.1
Schraudolph, N.N.2
Faty, M.3
von Rohr, P.4
Friberg, M.T.5
Roth, A.C.6
Gonnet, P.7
Gonnet, G.8
Barral, Y.9
-
19
-
-
16344371940
-
Evolutionary Diversification of DNA Methyl Transferases in Eukaryotic genomes
-
10.1093/molbev/msi098, 15689527
-
Ponger L, Li W-H. Evolutionary Diversification of DNA Methyl Transferases in Eukaryotic genomes. Molecular biology and Evolution 2005, 22(4):1119-1128. 10.1093/molbev/msi098, 15689527.
-
(2005)
Molecular biology and Evolution
, vol.22
, Issue.4
, pp. 1119-1128
-
-
Ponger, L.1
Li, W.-H.2
-
20
-
-
77952355762
-
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
-
10.1126/science.1186366, 20395474
-
Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation. Science 2010, 328:916-919. 10.1126/science.1186366, 20395474.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
21
-
-
79961081499
-
DNA Methylation regulates phenotype-dependent transcriptional activity in Candida alibicans
-
10.1073/pnas.1109631108, 3141964, 21730141
-
Mishra PK, Baum M, Carbon J. DNA Methylation regulates phenotype-dependent transcriptional activity in Candida alibicans. PNAS 2011, 108(29):11965-11970. 10.1073/pnas.1109631108, 3141964, 21730141.
-
(2011)
PNAS
, vol.108
, Issue.29
, pp. 11965-11970
-
-
Mishra, P.K.1
Baum, M.2
Carbon, J.3
-
22
-
-
0346752108
-
Nucleotide frequency variation across human genes
-
10.1101/gr.1317703, 403801, 14613976
-
Louie E, Ott J, Majewski J. Nucleotide frequency variation across human genes. Genome Research 2003, 13:2594-2601. 10.1101/gr.1317703, 403801, 14613976.
-
(2003)
Genome Research
, vol.13
, pp. 2594-2601
-
-
Louie, E.1
Ott, J.2
Majewski, J.3
-
23
-
-
77953642094
-
The evolution of transcription-associated biases in vertebrates
-
10.1186/1471-2148-10-187, 2927911, 20565875
-
Polak P, Querfurth R, Arndt PF. The evolution of transcription-associated biases in vertebrates. BMC Evolutionary Biology 2010, 10:187. 10.1186/1471-2148-10-187, 2927911, 20565875.
-
(2010)
BMC Evolutionary Biology
, vol.10
, pp. 187
-
-
Polak, P.1
Querfurth, R.2
Arndt, P.F.3
-
24
-
-
0347627539
-
Transcription-coupled TA and GC stand asymmetries in the human genome
-
10.1016/S0014-5793(03)01306-1, 14675777
-
Touchon M, Nicolay S, Arneodo A, d'Aubenton-Carafa Y, Thermes C. Transcription-coupled TA and GC stand asymmetries in the human genome. FEBS Letters 2003, 555:579-582. 10.1016/S0014-5793(03)01306-1, 14675777.
-
(2003)
FEBS Letters
, vol.555
, pp. 579-582
-
-
Touchon, M.1
Nicolay, S.2
Arneodo, A.3
d'Aubenton-Carafa, Y.4
Thermes, C.5
-
26
-
-
80053451095
-
Atypical AT Skew in Firmicute Genomes Results from Selection and Not from Mutation
-
10.1371/journal.pgen.1002283, 3174206, 21935355
-
Charneski CA, Honti F, Bryant JM, Hurst LD, Feil EJ. Atypical AT Skew in Firmicute Genomes Results from Selection and Not from Mutation. PLoS Genetics 2011, 7(9):e1002283. 10.1371/journal.pgen.1002283, 3174206, 21935355.
-
(2011)
PLoS Genetics
, vol.7
, Issue.9
-
-
Charneski, C.A.1
Honti, F.2
Bryant, J.M.3
Hurst, L.D.4
Feil, E.J.5
-
27
-
-
74449085934
-
A small-cell lung cancer genome with complex signatures of tobacco exposure
-
10.1038/nature08629, 2880489, 20016488
-
Pleasance ED, Stephens PJ, O'Meara S, McBride DJ, Meynert A, Jones D, Lin M-L, Beare D, King Wai L, Greenman CD, et al. A small-cell lung cancer genome with complex signatures of tobacco exposure. Nature 2010, 463:184-192. 10.1038/nature08629, 2880489, 20016488.
-
(2010)
Nature
, vol.463
, pp. 184-192
-
-
Pleasance, E.D.1
Stephens, P.J.2
O'Meara, S.3
McBride, D.J.4
Meynert, A.5
Jones, D.6
Lin, M.-L.7
Beare, D.8
King Wai, L.9
Greenman, C.D.10
-
28
-
-
74449093973
-
A comprehensive catalogue of somatic mutations from a human cancer genome
-
10.1038/nature08658, 3145108, 20016485
-
Pleasance ED, Cheetham RK, Stephens PJ, McBride DJ, Humphray SJ, Greenman CD, Varela I, Lin M-L, Ordonez GR, Bignell GR, et al. A comprehensive catalogue of somatic mutations from a human cancer genome. Nature 2010, 463:191-197. 10.1038/nature08658, 3145108, 20016485.
-
(2010)
Nature
, vol.463
, pp. 191-197
-
-
Pleasance, E.D.1
Cheetham, R.K.2
Stephens, P.J.3
McBride, D.J.4
Humphray, S.J.5
Greenman, C.D.6
Varela, I.7
Lin, M.-L.8
Ordonez, G.R.9
Bignell, G.R.10
-
29
-
-
67651095903
-
Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes
-
10.1016/j.molcel.2009.06.009, 2791892, 19647516
-
Saeki H, Svejstrup JQ. Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes. Molecular Cell 2009, 35(2):191-205. 10.1016/j.molcel.2009.06.009, 2791892, 19647516.
-
(2009)
Molecular Cell
, vol.35
, Issue.2
, pp. 191-205
-
-
Saeki, H.1
Svejstrup, J.Q.2
-
30
-
-
0028143584
-
Physiological concentrations of purines and pyramidines
-
10.1007/BF00928361, 7877593
-
Traut TW. Physiological concentrations of purines and pyramidines. Molecular and Cellular Biochemistry 1994, 140:1-22. 10.1007/BF00928361, 7877593.
-
(1994)
Molecular and Cellular Biochemistry
, vol.140
, pp. 1-22
-
-
Traut, T.W.1
-
31
-
-
0014952472
-
Nucleotide pool levels in growing, inhibited, and transformed chick fibroblast cells
-
10.1021/bi00806a029, 4313738
-
Colby C, Edlin G. Nucleotide pool levels in growing, inhibited, and transformed chick fibroblast cells. Biochemistry 1970, 9:917-920. 10.1021/bi00806a029, 4313738.
-
(1970)
Biochemistry
, vol.9
, pp. 917-920
-
-
Colby, C.1
Edlin, G.2
-
32
-
-
0000149010
-
Nucleotide pools in leaf and root tissues of tobacco plants: Influence of leaf senescence
-
Meyer R, Wagner KG. Nucleotide pools in leaf and root tissues of tobacco plants: Influence of leaf senescence. Physiologia Plantarum 1986, 67(4):666-672.
-
(1986)
Physiologia Plantarum
, vol.67
, Issue.4
, pp. 666-672
-
-
Meyer, R.1
Wagner, K.G.2
-
33
-
-
0016429831
-
Nucleotide pools and regulation of ribonucleic acid synthesis in yeast
-
245992, 1089641
-
Kudrna R, Eldin G. Nucleotide pools and regulation of ribonucleic acid synthesis in yeast. Journal of Bacteriology 1975, 121(2):740-742. 245992, 1089641.
-
(1975)
Journal of Bacteriology
, vol.121
, Issue.2
, pp. 740-742
-
-
Kudrna, R.1
Eldin, G.2
-
34
-
-
47049121713
-
GC skew in protein-coding genes between the leading and lagging strands in bacterial genomes: New substitution models incorporating strand bias
-
10.1016/j.jtbi.2008.04.004, 18486155
-
Marin A, Xia X. GC skew in protein-coding genes between the leading and lagging strands in bacterial genomes: New substitution models incorporating strand bias. Journal of Theoretical Biology 2008, 253(3):508-513. 10.1016/j.jtbi.2008.04.004, 18486155.
-
(2008)
Journal of Theoretical Biology
, vol.253
, Issue.3
, pp. 508-513
-
-
Marin, A.1
Xia, X.2
-
35
-
-
78649240033
-
Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
-
10.1101/gr.109553.110, 2945194, 20810668
-
Bruno VM, Wang Z, Marjani S, Euskirchen GM, Martin J, Sherlock G, Snyder M. Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq. Genome Research 2010, 20:1451-1458. 10.1101/gr.109553.110, 2945194, 20810668.
-
(2010)
Genome Research
, vol.20
, pp. 1451-1458
-
-
Bruno, V.M.1
Wang, Z.2
Marjani, S.3
Euskirchen, G.M.4
Martin, J.5
Sherlock, G.6
Snyder, M.7
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