Erratum to Characterization and screening of plant probiotic traits of bacteria isolated from rice seeds cultivated in Argentina (The Journal of Microbiology, (2011), 49, 6 (902-912), 10.1007/s12275-011-1073-6);Characterization and screening of plant probiotic traits of bacteria isolated from rice seeds cultivated in Argentina

Journal of Microbiology

Volumn 49, Issue 6, 2011, Pages 902-912

  Ruiza, Dante ^a   Agaras, Betina ^b   de Werrab, Patrice ^c   Wall, Luis G ^b   Valverde, Claudio ^b  

^a Nitrasoil Argentina SA   (Argentina)

^b UNIVERSIDAD NACIONAL DE QUILMES   (Argentina)

^c BERN UNIVERSITY OF APPLIED SCIENCES   (Switzerland)

Author keywords

diversity; Pantoea; plant probiotic bacteria; rice; root colonization; seed

Indexed keywords

BACTERIA (MICROORGANISMS); CURVULARIA; PANTOEA;

EID: 84555194878     PISSN: 12258873     EISSN: 19763794     Source Type: Journal    
DOI: 10.1007/s12275-012-0634-7     Document Type: Erratum

References (57)

1. Asis, C. A., Jr. and K. Adachi. 2004. Isolation of endophytic diazotroph Pantoea agglomerans and nondiazotroph Enterobacter asburiae from sweetpotato stem in Japan. Lett. Appl. Microbiol. 38, 19-23.
2. Bacilio-Jiménez, M., S. Aguilar-Flores, M. V. del Valle, A. Pérez, A. Zepeda, and E. Zenteno. 2001. Endophytic bacteria in rice seeds inhibit early colonization of roots by Azospirillum brasilense. Soil Biol. Biochem. 33, 167-172.
3. Bashan, Y. 1998. Inoculants of plant-growth promoting bacteria for use in agriculture. Biotechnol. Adv. 16, 729-770.
4. Bashan, Y. and G. Holguin. 1998. Proposal for the division of plant growth promoting rhizobacteria into two classifications: Biocontrol-PGPB (plant growth-promoting bacteria) and PGPB. Soil Biol. Biochem. 30, 1225-1228.
5. Berg, G. 2009. Plant-microbe interactions promoting plant growth and health: Perspectives for controlled use of microorganisms in agriculture. Appl. Microbiol. Biotechnol. 84, 11-18.
6. Bonaterra, A., M. Mari, L. Casalini, and E. Montesinos. 2003. Biological control of Monilinia laxa and Rhizopus stolonifer in postharvest of stone fruit by Pantoea agglomerans EPS125 and putative mechanisms of antagonism. Int. J. Food Microbiol. 84, 93-104.
7. Brandl, M. T. and S. E. Lindow. 1996. Cloning and characterization of a locus encoding an indolepyruvate decarboxylase involved in indole-3-acetic acid synthesis in Erwinia herbicola. Appl. Environ. Microbiol. 62, 4121-4128.
8. Brown, M. E. 1974. Seed and root bacterization. Annu. Rev. Phytopathol. 12, 181-197.
9. Cha, C., P. Gao, Y. C. Chen, P. D. Shaw, and S. K. Farrand. 1998. Production of acyl-homoserine lactone quorum-sensing signals by Gram-negative plant-associated bacteria. Mol. Plant Microbe Interact. 11, 1119-1129.
10. Chi, F., S. H. Shen, H. P. Cheng, Y. X. Jing, Y. G. Yanni, and F. B. Dazzo. 2005. Ascending migration of endophytic rhizobia, from roots to leaves, inside rice plants and assessment of benefits to rice growth physiology. Appl. Environ. Microbiol. 71, 7271-7278.
11. Cole, J. R., Q. Wang, E. Cardenas, J. Fish, B. Chai, R. J. Farris, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, T. Marsh, G. M. Garrity, and J. M. Tiedje. 2009. The ribosomal database project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37, 141-145.
12. Cottyn, B., J. debode, E. Regalado, T. W. Mew, and J. Swings. 2009. Phenotypic and genetic diversity of rice seed-associated bacteria and their role in pathogenicity and biological control. J. Appl. Microbiol. 107, 885-897.
13. Cottyn, B., E. Regalado, B. Lanoot, M. De Cleene, T. W. Mew, and J. Swings. 2001. Bacterial populations associated with rice seed in the tropical environment. Phytopathol. 91, 282-292.
14. Dastager, S. G., C. K. Deepa, S. C. Puneet, C. S. Nautiyal, and A. Pandey. 2009. Isolation and characterization of plant growth-promoting strain Pantoea NII-186 from Western Ghat forest soil, India. Lett. Appl. Microbiol. 49, 20-25.
15. Elbeltagy, A., K. Nishioka, T. Sato, H. Suzuki, B. Ye, T. Hamada, T. Isawa, H. Mitsui, and K. Minamisawa. 2001. Endophytic colonization and in planta nitrogen fixation by a Herbaspirillum sp. isolated from wild rice species. Appl. Environ. Microbiol. 67, 5285-5293.
16. Elvira-Recuenco, M. and J. W. van Vuurde. 2000. Natural incidence of endophytic bacteria in pea cultivars under field conditions. Can. J. Microbiol. 46, 1036-1041.
17. Fahråeus, G. 1957. The infection of clover root hairs by nodule bacteria studied by a simple glass slide technique. J. Gen. Microbiol. 16, 374-381.
18. Feng, Y., D. Shen, X. Dong, and W. Song. 2003. In vitro symplasmata formation in the rice diazotrophic endophyte Pantoea agglomerans YS19. Plant Soil 255, 435-444.
19. Gould, W. D., C. Hagedorn, T. R. Bardinelli, and R. M. Zablotowicz. 1985. New selective media for enumeration and recovery of fluorescent pseudomonads from various habitats. Appl. Environ. Microbiol. 49, 28-32.
20. Gyaneshwar, P., E. K. James, N. Mathan, P. M. Reddy, B. Reinhold- Hurek, and J. K. Ladha. 2001. Endophytic colonization of rice by a diazotrophic strain of Serratia marcescens. J. Bacteriol. 183, 2634-2645.
21. Haas, D. and C. Keel. 2003. Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease. Annu. Rev. Phytopathol. 41, 117-153.
22. Hardoim, P. R., F. D. Andreote, B. Reinhold-Hurek, A. Sessitsch, L. S. van Overbeek, and J. D. van Elsas. 2011. Rice root-associated bacteria: insights into community structures across 10 cultivars. FEMS Microbiol. Ecol. 77, 154-164.
23. Hurek, T., B. Reinhold-Hurek, M. van Montagu, and E. Kellenberger. 1994. Root colonization and systemic spreading of Azoarcus sp. strain BH72 in grasses. J. Bacteriol. 176, 1913-1923.
24. Jackson, D. W., K. Suzuki, L. Oakford, J. W. Simecka, M. E. Hart, and T. Romeo. 2002. Biofilm formation and dispersal under the influence of the global regulator CsrA of Escherichia coli. J. Bacteriol. 184, 290-301.
25. James, E. K., P. Gyaneshwar, N. Mathan, W. L. Barraquio, P. M. Reddy, P. P. Iannetta, F. L. Olivares, and J. K. Ladha. 2002. Infection and colonization of rice seedlings by the plant growth-promoting bacterium Herbaspirillum seropedicae Z67. Mol. Plant Microbe Interact. 15, 894-906.
26. Koch, B., L. Jensen, and O. Nybroe. 2001. A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria at a neutral chromosomal site. J. Microbiol. Methods 45, 187-195.
27. Kuklinsky-Sobral, J., W. L. Araujo, R. Mendes, I. O. Geraldi, A. A. Pizzirani-Kleiner, and J. L. Azevedo. 2004. Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotion. Environ. Microbiol. 6, 1244-1251.
28. Li, B., G. Xie, R. Chen, W. Huangfu, and B. Liu. 2006. Effects of cropping system and cultivation pattern on bacterial populations and anti-Fusarium wilt bacteria in melon soils. Chin. J. Appl. Ecol. 17, 1937-1940.
29. Loiret, F. G., E. Ortega, D. Kleiner, P. Ortega-Rodes, R. Rodes, and Z. Dong. 2004. A putative new endophytic nitrogen-fixing bacterium Pantoea sp. from sugarcane. J. Appl. Microbiol. 97, 504-511.
30. Lugtenberg, B. and F. Kamilova. 2009. Plant-growth-promoting rhizobacteria. Annu. Rev. Microbiol. 63, 541-546.
31. Mano, H., F. Tanaka, A. Watanabe, H. Kaga, S. Okunishi, and H. Morisaki. 2006. Culturable surface and endophytic bacterial flora of the maturing seeds of rice plants (Oryza sativa) cultivated in a paddy field. Microbes Environ. 21, 86-100.
32. McClean, K. H., M. K. Winson, L. Fish, A. Taylor, S. R. Chhabra, M. Camara, M. Daykin, and et al. 1997. Quorum sensing and Chromobacterium violaceum: Exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology 143, 3703-3711.
33. Mew, T. W. and J. K. Misra. 1994. A manual of rice seed health testing. International Rice Research Institute, Los Baños, Philippines.
34. Mondal, K. K., P. Dureja, and J. P. Verma. 2001. Management of Xanthomonas camprestris pv. malvacearum-induced blight of cotton through phenolics of cotton rhizobacterium. Curr. Microbiol. 43, 336-339.
35. Mundt, C. C., H. U. Ahmed, M. R. Finckh, L. P. Nieva, and R. F. Alfonso. 1999. Primary disease gradients of bacterial blight of rice. Phytopathol. 89, 64-67.
36. Nelson, E. B. 2004. Microbial dynamics and interactions in the spermosphere. Annu. Rev. Phytopathol. 42, 271-309.
37. Okon, Y., S. L. Albrecht, and R. H. Burris. 1977. Methods for growing Spirillum lipoferum and for counting it in pure culture and in association with plants. Appl. Environ. Microbiol. 33, 85-88.
38. Okunishi, S., K. Sako, H. Mano, A. Imamura, and H. Morisaki. 2005. Bacterial flora of endophytes in the maturing seed of cultivated rice (Oryza sativa). Microbes Environ. 20, 168-177.
39. Ongena, M., F. Daayf, P. Jacques, P. Thonart, N. Benhamou, T. C. Paulitz, P. Cornelis, N. Koedam, and R. R. Belanger. 1999. Protection of cucumber against Pythium root rot by fluorescent pseudomonads: Predominant role of induced resistance over siderophores and antibiosis. Plant Pathol. 48, 66-76.
40. Ovadis, M., X. Liu, S. Gavriel, Z. Ismailov, I. Chet, and L. Chernin. 2004. The global regulator genes from biocontrol strain Serratia plymuthica IC1270: Cloning, sequencing, and functional studies. J. Bacteriol. 186, 4986-4993.
41. Pawlowski, K. and T. Bisseling. 1996. Rhizobial and actinorhizal symbioses: What are the shared features? Plant Cell 8, 1899-1913.
42. Picard, C., F. Di Cello, M. Ventura, R. Fani, and A. Guckert. 2000. Frequency and biodiversity of 2, 4-diacetylphloroglucinol-producing bacteria isolated from the maize rhizosphere at different stages of plant growth. Appl. Environ. Microbiol. 66, 948-955.
43. Pozzolo, O. R. and H. J. Ferrari. 2008. Arroz. Eficiencia de cosecha y postcosecha. Ediciones INTA, Argentina.
44. Rangarajan, S., L. M. Saleena, and S. Nair. 2002. Diversity of Pseudomonas spp. isolated from rice rhizosphere populations grown along a salinity gradient. Microb. Ecol. 43, 280-289.
45. Rezzonico, F., T. H. Smits, E. Montesinos, J. E. Frey, and B. Duffy. 2009. Genotypic comparison of Pantoea agglomerans plant and clinical strains. BMC Microbiol. 9, 204.
46. Robertson, B. K. and M. Alexander. 1994. Mode of dispersal of the stem-nodulating bacterium, Azorhizobium. Soil Biol. Biochem. 26, 1535-1540.
47. Rosenblueth, M. and E. Martinez-Romero. 2006. Bacterial endophytes and their interactions with hosts. Mol. Plant Microbe Interact. 19, 827-837.
48. Sarwar, M. and R. J. Kremer. 1995. Determination of bacterially derived auxins using a microplate method. Lett. Appl. Microbiol. 20, 282-285.
49. Singh, R. K., R. P. Mishra, H. K. Jaiswal, V. Kumar, S. P. Pandey, S. B. Rao, and K. Annapurna. 2006. Isolation and identification of natural endophytic rhizobia from rice (Oryza sativa L.) through rDNA PCR-RFLP and sequence analysis. Curr. Microbiol. 52, 345-349.
50. Steenhoudt, O. and J. Vanderleyden. 2000. Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: Genetic, biochemical and ecological aspects. FEMS Microbiol. Rev. 24, 487-506.
51. Sun, L., F. Qiu, X. Zhang, X. Dai, X. Dong, and W. Song. 2008. Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis. Microb. Ecol. 55, 415-424.
52. Tripathi, A. K., S. C. Verma, and E. Z. Ron. 2002. Molecular characterization of a salt-tolerant bacterial community in the rice rhizosphere. Res. Microbiol. 153, 579-584.
53. Tsavkelova, E. A., T. A. Cherdyntseva, and A. I. Netrusov. 2005. Auxin production by bacteria associated with orchid roots. Mikrobiologiia 74, 55-62.
54. Verma, S. C., A. Singh, S. P. Chowdhury, and A. K. Tripathi. 2004. Endophytic colonization ability of two deep-water rice endophytes, Pantoea sp. and Ochrobactrum sp. using green fluorescent protein reporter. Biotechnol. Lett. 26, 425-429.
55. von der Weid, I., E. Paiva, A. Nobrega, J. D. van Elsas, and L. Seldin. 2000. Diversity of Paenibacillus polymyxa strains isolated from the rhizosphere of maize planted in cerrado soil. Res. Microbiol. 151, 369-381.
56. Wright, S. A., C. H. Zumoff, L. Schneider, and S. V. Beer. 2001. Pantoea agglomerans strain EH318 produces two antibiotics that inhibit Erwinia amylovora in vitro. Appl. Environ. Microbiol. 67, 284-292.
57. Xi, C., M. Lambrecht, J. Vanderleyden, and J. Michiels. 1999. Bi-functional gfp- and gusA-containing mini-Tn5 transposon derivatives for combined gene expression and bacterial localization studies. J. Microbiol. Methods 35, 85-92.