Diversity of Pseudomonas spp. isolated from rice rhizosphere populations grown along a salinity gradient

Microbial Ecology

Volumn 43, Issue 2, 2002, Pages 280-289

  Rangarajan, S ^a   Saleena, L M ^a   Nair, Sudha ^a  

^a M S SWAMINATHAN RESEARCH FOUNDATION   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; ENVIRONMENTAL GRADIENT; RHIZOSPHERE; RICE; SALINITY; SPECIES DIVERSITY;

INDIA;

ALCALIGENES; BACTERIA (MICROORGANISMS); ORYZA SATIVA; PSEUDOMONAS; PSEUDOMONAS ALCALIGENES; PSEUDOMONAS FLUORESCENS GROUP; PSEUDOMONAS PSEUDOALCALIGENES;

SODIUM CHLORIDE;

ADAPTATION; AGRICULTURE; ANTIBIOTIC RESISTANCE; ARTICLE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHENOTYPE; PLANT ROOT; POLYMERASE CHAIN REACTION; POPULATION DYNAMICS; PSEUDOMONAS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RICE;

ADAPTATION, PHYSIOLOGICAL; AGRICULTURE; DRUG RESISTANCE, MICROBIAL; ORYZA SATIVA; PHENOTYPE; PLANT ROOTS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POPULATION DYNAMICS; PSEUDOMONAS; SODIUM CHLORIDE;

EID: 0036491386     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-002-2004-1     Document Type: Article

References (31)

1. Alm EW, Oerther DB, Larsen N, Stahl DA, Raskin L (1996) Oligonucleotide probe database. Appl Environ Microbiol 62:3557-3559
2. Anjaiah V, Koedam N, Thompson NB, Loper JE, Hofte M, Tambong JT, Cornelis P (1998) Involvement of phenazines and anthranilate in the antagonism of Pseudomonas aeruginosa PNA1 and Tn5 derivatives towards Fusarium spp and Pythium spp. Mol Plant-Microbe Interact 11:847-854
3. Boeufgras JM, Balyer JM, Allard F, Diaz M (1987) A new computer program for routine interpretation of API system II conference on taxonomy and automatic identification of bacteria. Prague, June 29-July 3
4. Bolton H, Elliot LF, Papendick RI, Bezdicek DF (1985) Soil microbial biomass and selected soil enzyme activities: effect of fertilization and cropping practices. Soil Biol Biochem 17:297-302
5. Borneman J, Skroch PW, O'Sullivan KM, Palus JA, Rumjanek NG, Jansen JL, Nienhuis J, Triplett EW (1996) Molecular microbial diversity of an agricultural soil in Wisconsin. Appl Environ Microbiol 62:1935-1943
6. Brosius J, Dull TJ, Sleeter D, Noller HF (1981) Gene organisation and primary structure of a ribosomal DNA operon from Escherichia coli. J Mol Biol 148:107-127
7. De Leij FAA, Sutton MEM, Whipps JM, Fenlon JS, Lynch JM (1995) Impact of field release of genetically modified Pseudomonas fluorescens on indigenous microbial populations of wheat. Appl Environ Microbiol 61:3442-3453
8. Defago G, Haas D (1990) Pseudomonads as antagonists of soilborne plant pathogens: modes of action and genetic analysis. Soil Biochem 6:249-291
9. Di Cello F, Bevivino A, Chiarini L, Fani R, Paffetti D, Tabacchioni S, Dalmastri S (1997) Biodiversity of a Burk-holderia cepacia population isolated from the maize rhizosphere at different plant growth stages. Appl Environ Microbiol 63 11:4485-4493
10. Douka CE, Apostalakis CG, Skarloy VD (1978) Studies of Rhizobium meliloti isolated from salt-affected soil. Ann Appl Biol 88:457-460
11. Gardener BBM, Schroeder KM, Kalloger E, Raaijmakers JM, Thomashow LS, Weller DM (2000) Genotypic and phenotypic diversity of phlD-containing Pseudomonas strains isolated from the rhizosphere of wheat. Appl Environ Microbiol 66:1939-1946
12. Goyal S, Mishra MM, Dhankar SS, Kapoor KK, Batra R (1993) Microbial biomass turnover and enzyme activities following the application of farmyard manure to field soils with and without previous long term applications. Biol Fertil Soils 15:60-64
13. Graves LM, Swaminathan B (1993) Universal DNA isolation procedure. In: DH Persing, TF Smith, FC Tenover, and TJ White (eds) Diagnostic Molecular Microbiology: Principles and Applications. American Society of Microbiology, Washington DC, pp 617-621
14. Hoflich G, Tauschke M, Kuhn G, Rogasik J (2000) Influence of agricultural crops and fertilization on microbial activity and microorganisms in the rhizosphere. J Agronomy Crop Sci 184:49-54
15. Hua SST, Tsai V, Lichens GM, Noma AT (1982) Accumulation of amino acids in Rhizobium spp WR 10001 in response to sodium chloride salinity. Appl Environ Microbiol 44:135-140
16. Kloepper JW, Schroth MN, Miller TD (1980) Effects of rhizosphere colonization by plant growth promoting rhizobacteria on potato development and yield. Phytopathology 70:1078-1082
17. Laguerre G, Allard MR, Revoy F, Amarger N (1994) Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl Environ Microbiol 60:56-63
18. Laguerre G, Rigottier-Gios L, Lemanceau P (1994) Fluorescent Pseudomonas species categorized by using polymerase chain reaction (PCR)/restriction fragment length analysis of 16S rDNA. Mol Ecol 3:479-487
19. Lawlor K, Knight BP, Barbosa-Jefferson VL, Lane PW, Lilley AK, Paton GI, McGrath SP, O'Flaherty SM, Hirsh PR (2000) Comparison of methods to investigate microbial populations in soils under different agricultural management FEMS Microbiol Ecol 33:129-137, 2000
20. Maughan PJ, Maroof SMA, Bluss GR, Huestis GM (1996) Amplified fragment length polymorphism (AFLP) in soybean: species diversity inheritance and near-isogenic line analysis. Theor Appl Genet 93:392-401
21. Raaijmakers JM, Weler DM, Thomasriow LS (1997) Frequency of antibiotic producing Pseudomonas spp. in natural environments. Appl Environ Microbiol 63:881-887
22. Rangarajan S, Loganathan P, Saleena LM, Nair S (2001) Diversity of Pseudomonads isolated from three different plant rhizospheres. J Appl Microbiol 91:742-749
23. Rossum DV, Schuurmans FP, Gillis M, Muyotcha A, van Verseveld HW, Stouthamer AH, Boogerd FC (1995) Genetic and phenetic analysis of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L) roots. Appl Environ Microbiol 61:1599-1609
24. nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
25. Smith JJ, Offord LC, Holderness M, Saddler GS (1995) Genetic diversity of Burkholderia solanacearum (synonym Pseudomonas solanacearum) race 3 in Kenya. Appl Environ Microbiol 61:4263-4268
26. Sneath PHA, Sokal RR (1973) Numerical Taxonomy: The Principles and Practices of Numerical Classification. WH Freeman, San Francisco
27. Tripathi AK, Mishra BM, Tripathi P (1998) Salinity stress responses in the plant growth promoting rhizobacteria Azospirillum spp. J Biosci 23:463-471
28. Wayne LG, Brenner DJ, Colwell RR, Grimon PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackerbrandt E, Starr MP, Truper HG (1987) Report of the ad hoc committee on reconciliation of approaches of bacterial systematics. Int J Sys Bacteriol 37:463-464
29. Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697-703
30. Widmer F, Seidler RJ, Gillevet PM, Watrud LS, Giovanni GD (1998) A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples. Appl Environ Microbiol 64:2545-2553
31. Wise MG, Shimkets LJ, Vaun McArthur J (1995) Genetic structure of a lotic population of Burkholderia (Pseudomonas cepacid). Appl Environ Microbiol 61:1791-1798