메뉴 건너뛰기




Volumn 809, Issue , 2012, Pages 135-148

In vivo ChIP for the analysis of microdissected tissue samples

Author keywords

Brain; ChIP; Chromatin; Immunoprecipitation; Microdissection

Indexed keywords

ANIMAL; ARTICLE; BRAIN; CHROMATIN IMMUNOPRECIPITATION; MALE; METABOLISM; METHODOLOGY; MICRODISSECTION; MOUSE;

EID: 84555178829     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-376-9_9     Document Type: Article
Times cited : (14)

References (26)
  • 1
    • 0043171067 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation: A tool for studying histone acetylation and transcription factor binding
    • DOI 10.1016/S1046-2023(03)00089-6
    • Spencer VA, Sun JM, Li L, Davie JR. (2003). Chromatin immunoprecipitation: a tool for studying histone acetylation and transcription factor binding. Methods 31, 67-75. (Pubitemid 36945172)
    • (2003) Methods , vol.31 , Issue.1 , pp. 67-75
    • Spencer, V.A.1    Sun, J.-M.2    Li, L.3    Davie, J.R.4
  • 2
    • 68949188612 scopus 로고    scopus 로고
    • ChIP-on- Chip Analysis methods for Affymetrix Tiling Arrays
    • Yoder SJ, Enkemann SA. (2009). ChIP-on- Chip Analysis methods for Affymetrix Tiling Arrays. Methods Mol Biol 523, 367-381.
    • (2009) Methods Mol Biol , vol.523 , pp. 367-381
    • Yoder, S.J.1    Enkemann, S.A.2
  • 3
    • 75549091976 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation for identifying transcription factor targets in keratinocytes
    • Ortt K, Sinha S. (2010). Chromatin immunoprecipitation for identifying transcription factor targets in keratinocytes. Methods Mol Biol 585, 159-170.
    • (2010) Methods Mol Biol , vol.585 , pp. 159-170
    • Ortt, K.1    Sinha, S.2
  • 4
    • 70349312354 scopus 로고    scopus 로고
    • ChIP-seq: Advantages and challenges of a maturing technology
    • Park PJ. (2009). ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet 10, 669-680.
    • (2009) Nat Rev Genet , vol.10 , pp. 669-680
    • Park, P.J.1
  • 5
    • 14944342993 scopus 로고    scopus 로고
    • Isotropic fractionator: A simple, rapid method for the quantification of total cell and neuron numbers in the brain
    • DOI 10.1523/JNEUROSCI.4526-04.2005
    • Herculano-Houzel S, Lent R. (2005). Isotropic fractionator: a simple, rapid method for the quantifi cation of total cell and neuron numbers in the brain. J Neurosci 25, 2518-2521. (Pubitemid 40365162)
    • (2005) Journal of Neuroscience , vol.25 , Issue.10 , pp. 2518-2521
    • Herculano-Houzel, S.1    Lent, R.2
  • 6
    • 0023948705 scopus 로고
    • Mapping protein-DNA in vivo with formaldehyde: Evidence that histone 4 is retained on a highly transcribed gene
    • Solomon MJ, Larsen PL, Varshavsky A. (1988). Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene. Cell 53, 937-947.
    • (1988) Cell , vol.53 , pp. 937-947
    • Solomon, M.J.1    Larsen, P.L.2    Varshavsky, A.3
  • 7
    • 73949102040 scopus 로고    scopus 로고
    • The state-of-the-art of chromatin immunoprecipitation
    • Collas P. (2009). The state-of-the-art of chromatin immunoprecipitation. Methods Mol Biol 567, 1-25.
    • (2009) Methods Mol Biol , vol.567 , pp. 1-25
    • Collas, P.1
  • 8
    • 33847661809 scopus 로고    scopus 로고
    • Protocol for the fast chromatin immunoprecipitation (ChIP) method
    • Nelson JD, Denisenko O, Bomsztyk K. (2006). Protocol for the fast chromatin immunoprecipitation (ChIP) method. Nat Protoc 1, 179-185.
    • (2006) Nat Protoc , vol.1 , pp. 179-185
    • Nelson, J.D.1    Denisenko, O.2    Bomsztyk, K.3
  • 9
    • 73949144720 scopus 로고    scopus 로고
    • The fast chromatin immunoprecipitation method
    • Nelson J, Denisenko O, Bomsztyk K. (2009). The fast chromatin immunoprecipitation method. Methods Mol Biol 567, 45-57.
    • (2009) Methods Mol Biol , vol.567 , pp. 45-57
    • Nelson, J.1    Denisenko, O.2    Bomsztyk, K.3
  • 10
    • 33846563852 scopus 로고    scopus 로고
    • Faster and easier chromatin immunoprecipitation assay with high sensitivity
    • DOI 10.1002/pmic.200600283
    • Kohzaki H, Murakami Y. (2007). Faster and easier chromatin immunoprecipitation assay with high sensitivity. Proteomics 7, 10-14. (Pubitemid 46173711)
    • (2007) Proteomics , vol.7 , Issue.1 , pp. 10-14
    • Kohzaki, H.1    Murakami, Y.2
  • 11
    • 73949102040 scopus 로고    scopus 로고
    • The state-of-the-art of chromatin immunoprecipitation
    • Collas P. (2009). The state-of-the-art of chromatin immunoprecipitation. Methods Mol Biol 567, 1-25.
    • (2009) Methods Mol Biol , vol.567 , pp. 1-25
    • Collas, P.1
  • 12
    • 39649102432 scopus 로고    scopus 로고
    • Regulation of antiatherogenic apolipoprotein M gene expression by the orphan nuclear receptor LRH-1
    • Venteclef N, Haroniti A, Tousaint JJ, Talianidis I, Delerive P. (2008). Regulation of Antiatherogenic Apolipoprotein M Gene Expression by the Orphan Nuclear Receptor LRH-1. J Bio Chem 283, 3694-3701.
    • (2008) J Bio Chem , vol.283 , pp. 3694-3701
    • Venteclef, N.1    Haroniti, A.2    Tousaint, J.J.3    Talianidis, I.4    Delerive, P.5
  • 13
    • 39449114225 scopus 로고    scopus 로고
    • Microplatebased chromatin immunoprecipitation method, Matrix ChIP: A platform to study signaling of complex genomic events
    • Flanagin S, Nelson JD, Castner DG, Denisenko O, Bomsztyk K. (2008). Microplatebased chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events. Nucleic Acids Res 36, 17.
    • (2008) Nucleic Acids Res , vol.36 , pp. 17
    • Flanagin, S.1    Nelson, J.D.2    Castner, D.G.3    Denisenko, O.4    Bomsztyk, K.5
  • 14
    • 33745549658 scopus 로고    scopus 로고
    • Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations
    • DOI 10.1038/ng1820, PII N1820
    • O'Neill LP, VerMilyea MD, Turner BM. (2006). Epigenitic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations. Nat Genet 38, 835-841. (Pubitemid 43980607)
    • (2006) Nature Genetics , vol.38 , Issue.7 , pp. 835-841
    • O'Neill, L.P.1    VerMilyea, M.D.2    Turner, B.M.3
  • 15
    • 0029827129 scopus 로고    scopus 로고
    • Immunopre cipitation of chromatin
    • O'Neill LP, Turner BM. (1996). Immunopre cipitation of chromatin. Methods Enzymol 274, 189-197.
    • (1996) Methods Enzymol , vol.274 , pp. 189-197
    • O'Neill, L.P.1    Turner, B.M.2
  • 16
    • 44449096525 scopus 로고    scopus 로고
    • A fast carrier chromatin immunoprecipitation method appliciable to microdisected tissue samples
    • Hao H, Liu H, Gonye G, Schwaber JS. (2008). A fast carrier chromatin immunoprecipitation method appliciable to microdisected tissue samples. J Neurosci Methods 172, 38-42.
    • (2008) J Neurosci Methods , vol.172 , pp. 38-42
    • Hao, H.1    Liu, H.2    Gonye, G.3    Schwaber, J.S.4
  • 17
    • 34147171123 scopus 로고    scopus 로고
    • 2ChIP, a quick and quantitative chromatin immunoprecipitation assay, unravels epigenetic dynamics of developmentally regulated genes in human carcinoma cells
    • DOI 10.1634/stemcells.2006-0430
    • Dahl JA, Collas P. (2007). Q2ChIP, a quick and quantitative chromatin immunoprecipitation assay unravels epigenetic dynamics of developmentally regulated genes in human carcinoma cells. Stem Cells 25, 1037-1046. (Pubitemid 46572602)
    • (2007) Stem Cells , vol.25 , Issue.4 , pp. 1037-1046
    • Dahl, J.A.1    Collas, P.2
  • 18
    • 44949138461 scopus 로고    scopus 로고
    • A rapid micro chromatin immunoprecipitation assay (ChIP)
    • DOI 10.1038/nprot.2008.68, PII NPROT.2008.68
    • Dahl JA, Collas P. (2008). A rapid micro chromatin immunoprecipitation assay (microChIP). Nat protocol 3, 1032-1045. (Pubitemid 351818692)
    • (2008) Nature Protocols , vol.3 , Issue.6 , pp. 1032-1045
    • Dahl, J.A.1    Collas, P.2
  • 20
    • 0015697938 scopus 로고
    • Isolated removal of hypothalamic or other brain nuclei of the rat
    • Palkovits M. (1972). Isolated removal of hypothalamic or other brain nuclei of the rat. Brain Research 59, 449-450.
    • (1972) Brain Research , vol.59 , pp. 449-450
    • Palkovits, M.1
  • 21
    • 1642337153 scopus 로고    scopus 로고
    • Use of bifunctional cross-linking reagents in mapping genomic distribution of chromatin remodeling complexes
    • DOI 10.1016/j.ymeth.2003.10.022, PII S1046202303002974
    • Fujita N, Wade PA. (2004). Use of bifunctional cross-linking reagents in mapping genomic distribution of chromatin remodeling complexes. Methods 33, 81-85. (Pubitemid 38369094)
    • (2004) Methods , vol.33 , Issue.1 , pp. 81-85
    • Fujita, N.1    Wade, P.A.2
  • 22
    • 34047198759 scopus 로고    scopus 로고
    • In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation
    • DOI 10.2144/000112297
    • Zeng PY, Vakoc CR, Chen ZC, Blobel GA, Berger SL. (2006) In vivo dual cross-linking for identifi cation of indirect DNA-associated proteins by chromatin immunoprecipitation. Biotechniques ; 41, 694-698. (Pubitemid 46534851)
    • (2006) BioTechniques , vol.41 , Issue.6 , pp. 694-698
    • Zeng, P.-Y.1    Vakoc, C.R.2    Chen, Z.-C.3    Blobel, G.A.4    Berger, S.L.5
  • 24
    • 2642544592 scopus 로고    scopus 로고
    • Estrogen receptor-α directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
    • DOI 10.1016/S0092-8674(03)00934-6
    • Métivier R, Penot G, Hübner MR, Reid G, Brand H, Kos M, Gannon F. (2003). Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell 115, 751-763. (Pubitemid 38030303)
    • (2003) Cell , vol.115 , Issue.6 , pp. 751-763
    • Metivier, R.1    Penot, G.2    Hubner, M.R.3    Reid, G.4    Brand, H.5    Kos, M.6    Gannon, F.7
  • 25
    • 0027192267 scopus 로고
    • Transcriptional silencing in yeast is associated with reduced nucleosome acetylation
    • M. Braunstein, A.B. Rose, S.G. Holmes, C.D. Allis and J.R. Broach. (1993). Transcriptional silencing in yeast is associated with reduced nucleosome acetylation. Genes Dev 7, 592-604. (Pubitemid 23125260)
    • (1993) Genes and Development , vol.7 , Issue.4 , pp. 592-604
    • Braunstein, M.1    Rose, A.B.2    Holmes, S.G.3    Allis, C.D.4    Broach, J.R.5
  • 26
    • 0035094767 scopus 로고    scopus 로고
    • A mouse Mecp2-null mutation causes neurological symptoms that mimic rett syndrome
    • DOI 10.1038/85899
    • Guy J, Hendrich B, Holmes M, Martin JE, Bird A. (2001). A mouse Mecp2-null mutation causes neurological symptoms that mimic Rett syndrome. Nat Genet 27, 322-326. (Pubitemid 32201856)
    • (2001) Nature Genetics , vol.27 , Issue.3 , pp. 322-326
    • Guy, J.1    Hendrich, B.2    Holmes, M.3    Martin, J.E.4    Bird, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.