메뉴 건너뛰기




Volumn 93, Issue 6, 2011, Pages 387-395

Functional genome annotation of Drosophila seminal fluid proteins using transcriptional genetic networks

Author keywords

[No Author keywords available]

Indexed keywords

PLASMA PROTEIN; SEMINAL FLUID PROTEIN; TRANSCRIPTOME; UNCLASSIFIED DRUG;

EID: 84555163658     PISSN: 00166723     EISSN: 14695073     Source Type: Journal    
DOI: 10.1017/S0016672311000346     Document Type: Article
Times cited : (26)

References (48)
  • 2
    • 0033828623 scopus 로고    scopus 로고
    • Guilt by association: Contextual information in genome analysis
    • Aravind, L. (2000). Guilt by association: contextual information in genome analysis. Genome Research 10, 1074-1077.
    • (2000) Genome Research , vol.10 , pp. 1074-1077
    • Aravind, L.1
  • 5
    • 0029842347 scopus 로고    scopus 로고
    • In vivo requirement for the paired domain and homeodomain of the paired segmentation gene product
    • Bertuccioli, C., Fasano, L., Jun, S., Wang, S., Sheng, G. & Desplan, C. (1996). In vivo requirement for the paired domain and homeodomain of the paired segmentation gene product. Development 122, 2673-2685. (Pubitemid 26326500)
    • (1996) Development , vol.122 , Issue.9 , pp. 2673-2685
    • Bertuccioli, C.1    Fasano, L.2    Jun, S.3    Wang, S.4    Sheng, G.5    Desplan, C.6
  • 6
    • 77249158974 scopus 로고    scopus 로고
    • Assessing functional annotation transfers with inter-species conserved coexpression: Application to plasmodium falciparum
    • Brehelin, L., Florent, I., Gascuel, O. & Marechal, E. (2010). Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum. BMC Genomics 11, 35.
    • (2010) BMC Genomics , vol.11 , pp. 35
    • Brehelin, L.1    Florent, I.2    Gascuel, O.3    Marechal, E.4
  • 7
    • 33645860490 scopus 로고    scopus 로고
    • Allocrine modulation of feeding behavior by the sex peptide of drosophila
    • Carvalho, G. B., Kapahi, P., Anderson, D. J. & Benzer, S. (2006). Allocrine modulation of feeding behavior by the sex peptide of Drosophila. Current Biology 16, 692-696.
    • (2006) Current Biology , vol.16 , pp. 692-696
    • Carvalho, G.B.1    Kapahi, P.2    Anderson, D.J.3    Benzer, S.4
  • 9
    • 34249804498 scopus 로고    scopus 로고
    • Using FlyAtlas to identify better Drosophila melanogaster models of human disease
    • DOI 10.1038/ng2049, PII NG2049
    • Chintapalli, V. R., Wang, J. & Dow, J. A. (2007). Using FlyAtlas to identify better Drosophila melanogaster models of human disease. Nature Genetics 39, 715-720. (Pubitemid 46848596)
    • (2007) Nature Genetics , vol.39 , Issue.6 , pp. 715-720
    • Chintapalli, V.R.1    Wang, J.2    Dow, J.A.T.3
  • 13
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • DOI 10.1038/nprot.2007.131, PII NPROT.2007.131
    • Emanuelsson, O., Brunak, S., von Heijne, G. & Nielsen, H. (2007). Locating proteins in the cell using TargetP, SignalP and related tools. Nature Protocols 2, 953-971. (Pubitemid 46745592)
    • (2007) Nature Protocols , vol.2 , Issue.4 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    Von Heijne, G.3    Nielsen, H.4
  • 14
    • 66049143064 scopus 로고    scopus 로고
    • Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in drosophila
    • Findlay, G. D., MacCoss, M. J. & Swanson, W. J. (2009). Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila. Genome Research 19, 886-896.
    • (2009) Genome Research , vol.19 , pp. 886-896
    • Findlay, G.D.1    MacCoss, M.J.2    Swanson, W.J.3
  • 16
    • 66049159816 scopus 로고    scopus 로고
    • Genetic architecture of quantitative traits in mice, flies, and humans
    • Flint, J. & Mackay, T. F. C. (2009). Genetic architecture of quantitative traits in mice, flies, and humans. Genome Research 19, 723-733.
    • (2009) Genome Research , vol.19 , pp. 723-733
    • Flint, J.1    MacKay, T.F.C.2
  • 17
    • 77249138258 scopus 로고    scopus 로고
    • A review of current large-scale mouse knockout efforts
    • Guan, C., Ye, C., Yang, X. & Gao, J. (2010). A review of current large-scale mouse knockout efforts. Genesis 48, 73-85.
    • (2010) Genesis , vol.48 , pp. 73-85
    • Guan, C.1    Ye, C.2    Yang, X.3    Gao, J.4
  • 18
    • 0033951444 scopus 로고    scopus 로고
    • The Drosophila seminal fluid protein Acp26Aa stimulates release of oocytes by the ovary
    • Heifetz, Y., Lung, O., Frongillo, E. A. Jr & Wolfner, M. F. (2000). The Drosophila seminal fluid protein Acp26Aa stimulates release of oocytes by the ovary. Current Biology 10, 99-102. (Pubitemid 30079195)
    • (2000) Current Biology , vol.10 , Issue.2 , pp. 99-102
    • Heifetz, Y.1    Lung, O.2    Frongillo Jr., E.A.3    Wolfner, M.F.4
  • 19
    • 65349092773 scopus 로고    scopus 로고
    • Functional genomics and structural biology in the definition of gene function
    • Hrmova, M. & Fincher, G. B. (2009). Functional genomics and structural biology in the definition of gene function. Methods in Molecular Biology 513, 199-227.
    • (2009) Methods in Molecular Biology , vol.513 , pp. 199-227
    • Hrmova, M.1    Fincher, G.B.2
  • 20
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D. W., Sherman, B. T. & Lempicki, R. A. (2009). Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protocols 4, 44-57.
    • (2009) Nature Protocols , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 21
    • 73949158209 scopus 로고    scopus 로고
    • Drosophila male sex peptide inhibits siesta sleep and promotes locomotor activity in the post-mated female
    • Isaac, R. E., Li, C., Leedale, A. E. & Shirras, A. D. (2010). Drosophila male sex peptide inhibits siesta sleep and promotes locomotor activity in the post-mated female. Proceedings of the Biological Sciences 277, 65-70.
    • (2010) Proceedings of the Biological Sciences , vol.277 , pp. 65-70
    • Isaac, R.E.1    Li, C.2    Leedale, A.E.3    Shirras, A.D.4
  • 22
    • 0038725897 scopus 로고    scopus 로고
    • Genome-wide RNAi screening in Caenorhabditis elegans
    • DOI 10.1016/S1046-2023(03)00050-1
    • Kamath, R. S. & Ahringer, J. (2003). Genome-wide RNAi screening in Caenorhabditis elegans. Methods 30, 313-321. (Pubitemid 36793968)
    • (2003) Methods , vol.30 , Issue.4 , pp. 313-321
    • Kamath, R.S.1    Ahringer, J.2
  • 23
    • 0022587625 scopus 로고
    • Activation of the first component of human complement, C1, by monoclonal antibodies directed against different domains of subcomponent C1q
    • Kilchherr, E., Schumaker, V. N., Phillips, M. L. & Curtiss, L. K. (1986). Activation of the first component of human complement, C1, by monoclonal antibodies directed against different domains of subcomponent C1q. Journal of Immunology 137, 255-262. (Pubitemid 16100297)
    • (1986) Journal of Immunology , vol.137 , Issue.1 , pp. 255-262
    • Kilchherr, E.1    Schumaker, V.N.2    Phillips, M.L.3    Curtiss, L.K.4
  • 24
    • 77952245258 scopus 로고    scopus 로고
    • Biological cluster evaluation for gene function prediction
    • (Epublication ahead of print)
    • Klie, S., Nikoloski, Z. & Selbig, J. (2010). Biological cluster evaluation for gene function prediction. Journal of Computational Biology (Epublication ahead of print).
    • (2010) Journal of Computational Biology
    • Klie, S.1    Nikoloski, Z.2    Selbig, J.3
  • 25
    • 41449085571 scopus 로고    scopus 로고
    • Eigengene networks for studying the relationships between co-expression modules
    • Langfelder, P. & Horvath, S. (2007). Eigengene networks for studying the relationships between co-expression modules. BMC Systems Biology 1, 54.
    • (2007) BMC Systems Biology , vol.1 , pp. 54
    • Langfelder, P.1    Horvath, S.2
  • 27
    • 38549168494 scopus 로고    scopus 로고
    • Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
    • Luo, F., Yang, Y., Zhong, J., Gao, H., Khan, L., Thompson, D. K. & Zhou, J. (2007). Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory. BMC Bio-informatics 8, 299.
    • (2007) BMC Bio-informatics , vol.8 , pp. 299
    • Luo, F.1    Yang, Y.2    Zhong, J.3    Gao, H.4    Khan, L.5    Thompson, D.K.6    Zhou, J.7
  • 28
    • 67651108806 scopus 로고    scopus 로고
    • The genetics of quantitative traits: Challenges and prospects
    • Mackay, T. F. C., Stone, E. A. & Ayroles, J. F. (2009). The genetics of quantitative traits: challenges and prospects. Nature Reviews Genetics 10, 565-677.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 565-677
    • MacKay, T.F.C.1    Stone, E.A.2    Ayroles, J.F.3
  • 29
    • 49249095893 scopus 로고    scopus 로고
    • Functional annotation and identification of candidate disease genes by computational analysis of normal tissue gene expression data
    • Miozzi, L., Piro, R. M., Rosa, F., Ala, U., Silengo, L., Di Cunto, F. & Provero, P. (2008). Functional annotation and identification of candidate disease genes by computational analysis of normal tissue gene expression data. Public Library of Science One 6, e2439.
    • (2008) Public Library of Science One , vol.6
    • Miozzi, L.1    Piro, R.M.2    Rosa, F.3    Ala, U.4    Silengo, L.5    Di Cunto, F.6    Provero, P.7
  • 30
    • 0032888801 scopus 로고    scopus 로고
    • Wise, winsome, or weird? Mechanisms of sperm storage in female animals
    • Neubaum, D. M. & Wolfner, M. F. (1999). Wise, winsome, or weird? Mechanisms of sperm storage in female animals. Current Topics in Developmental Biology 41, 67-97.
    • (1999) Current Topics in Developmental Biology , vol.41 , pp. 67-97
    • Neubaum, D.M.1    Wolfner, M.F.2
  • 32
    • 0019133661 scopus 로고
    • Mutations affecting segment number and polarity in Drosophila
    • DOI 10.1038/287795a0
    • Nusslein-Volhard, C. & Wieschaus, E. (1980). Mutations affecting segment number and polarity in Drosophila. Nature 287, 795-801. (Pubitemid 11214475)
    • (1980) Nature , vol.287 , Issue.5785 , pp. 795-801
    • Nusslein-Volhard, C.1    Wieschaus, E.2
  • 33
    • 34548573170 scopus 로고    scopus 로고
    • Why are there still over 1000 uncharacterized yeast genes?
    • DOI 10.1534/genetics.107.074468
    • Pena-Castillo, L. & Hughes, T. R. (2007). Why are there still over 1000 uncharacterized yeast genes? Genetics 176, 7-14. (Pubitemid 350021004)
    • (2007) Genetics , vol.176 , Issue.1 , pp. 7-14
    • Pena-Castillo, L.1    Hughes, T.R.2
  • 34
    • 34548458186 scopus 로고    scopus 로고
    • Seminal influences: Drosophila Acps and the molecular interplay between males and females during reproduction
    • DOI 10.1093/icb/icm046
    • Ravi Ram, K. & Wolfner, M. F. (2007). Seminal influences: Drosophila ACPs and the molecular interplay between males and females during reproduction. Integrative and Comparative Biology 47, 427-445. (Pubitemid 47353159)
    • (2007) Integrative and Comparative Biology , vol.47 , Issue.3 , pp. 427-445
    • Ram, K.R.1    Wolfner, M.F.2
  • 35
    • 70349323630 scopus 로고    scopus 로고
    • A network of interactions among seminal proteins underlies the long-term postmating response in drosophila
    • Ravi Ram, K. & Wolfner, M. F. (2009). A network of interactions among seminal proteins underlies the long-term postmating response in Drosophila. Proceedings of the National Academy of Sciences USA 106, 15384-15389.
    • (2009) Proceedings of the National Academy of Sciences USA , vol.106 , pp. 15384-15389
    • Ravi Ram, K.1    Wolfner, M.F.2
  • 36
    • 71949083098 scopus 로고    scopus 로고
    • Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes
    • Reverter, A., Ingham, A. & Dalrymple, B. P. (2008). Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes. BioData Mining 1, 8.
    • (2008) BioData Mining , vol.1 , pp. 8
    • Reverter, A.1    Ingham, A.2    Dalrymple, B.P.3
  • 39
    • 67149122033 scopus 로고    scopus 로고
    • Modulated modularity clustering as an exploratory tool for functional genomic inference
    • Stone, E. A. & Ayroles, J. F. (2009). Modulated modularity clustering as an exploratory tool for functional genomic inference. Public Library of Science Genetics 5, e1000479.
    • (2009) Public Library of Science Genetics , vol.5
    • Stone, E.A.1    Ayroles, J.F.2
  • 41
    • 0032845428 scopus 로고    scopus 로고
    • Male seminal fluid proteins are essential for sperm storage in Drosophila melanogaster
    • Tram, U. & Wolfner, M. F. (1999). Male seminal fluid proteins are essential for sperm storage in Drosophila melanogaster. Genetics 153, 837-844. (Pubitemid 29482339)
    • (1999) Genetics , vol.153 , Issue.2 , pp. 837-844
    • Tram, U.1    Wolfner, M.F.2
  • 42
    • 66649122827 scopus 로고    scopus 로고
    • Unraveling transcriptional control in arabidopsis using cis-regulatory elements and coexpression networks
    • Vandepoele, K., Quimbaya, M., Casneuf, T., De Veylder, L. & Van de Peer, Y. (2009). Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiology 150, 535-546.
    • (2009) Plant Physiology , vol.150 , pp. 535-546
    • Vandepoele, K.1    Quimbaya, M.2    Casneuf, T.3    De Veylder, L.4    Van De Peer, Y.5
  • 43
    • 0033452362 scopus 로고    scopus 로고
    • Prediction of gene function by genome-scale expression analysis: Prostate cancer-associated genes
    • DOI 10.1101/gr.9.12.1198
    • Walker, M. G., Volkmuth, W., Sprinzak, E., Hodgson, D. & Klingler, T. (1999). Prediction of gene function by genome-scale expression analysis: prostate cancer-associated genes. Genome Research 9, 1198-1203. (Pubitemid 30042503)
    • (1999) Genome Research , vol.9 , Issue.12 , pp. 1198-1203
    • Walker, M.G.1    Volkmuth, W.2    Sprinzak, E.3    Hodgson, D.4    Klingler, T.5
  • 45
    • 67650323690 scopus 로고    scopus 로고
    • Battle and ballet: Molecular interactions between the sexes in drosophila
    • Wolfner, M. F. (2009). Battle and ballet: molecular interactions between the sexes in Drosophila. Journal of Heredity 100, 399-410.
    • (2009) Journal of Heredity , vol.100 , pp. 399-410
    • Wolfner, M.F.1
  • 46
    • 0029941393 scopus 로고    scopus 로고
    • The functional conservation of proteins in evolutionary alleles and the dominant role of enhancers in evolution
    • Xue, L. & Noll, M. (1996). The functional conservation of proteins in evolutionary alleles and the dominant role of enhancers in evolution. European Molecular Biology Organization Journal 15, 3722-3731. (Pubitemid 26239785)
    • (1996) EMBO Journal , vol.15 , Issue.14 , pp. 3722-3731
    • Xue, L.1    Noll, M.2
  • 47
    • 0034724341 scopus 로고    scopus 로고
    • Drosophila female sexual behavior induced by sterile males showing copulation complementation
    • DOI 10.1073/pnas.060018897
    • Xue, L. & Noll, M. (2000). Drosophila female sexual behavior induced by sterile males showing copulation complementation. Proceedings of the National Academy of Sciences USA 97, 3272-3275. (Pubitemid 30183291)
    • (2000) Proceedings of the National Academy of Sciences of the United States of America , vol.97 , Issue.7 , pp. 3272-3275
    • Xue, L.1    Noll, M.2
  • 48
    • 0036340357 scopus 로고    scopus 로고
    • Dual role of the Pax gene paired in accessory gland development of Drosophila
    • Xue, L. & Noll, M. (2002). Dual role of the Pax gene paired in accessory gland development of Drosophila. Development 129, 339-346. (Pubitemid 34863801)
    • (2002) Development , vol.129 , Issue.2 , pp. 339-346
    • Xue, L.1    Noll, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.